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1.
ACS Sens ; 7(7): 1837-1846, 2022 07 22.
Article En | MEDLINE | ID: mdl-35713201

Melanoma is a malignant cancer with a high risk of metastasis and continued increase in death rates over the past decades, and its prognosis is highly related to the disease's stage, while early detection and treatment of melanoma are significant to the improvement of its therapy outcome. Different from the traditional methods for disease diagnosis, enzyme-activated fluorescent probes were developed rapidly due to their high sensitivity and temporal-spatial ratio and have been widely applied in tumor detection, surgical navigation, and cancer-related research. Fibroblast activation protein-α (FAPα), a serine-type cell surface protease that plays important roles in cell invasion and extracellular matrix degradation, is widely involved in tumor progression such as malignant melanoma, so developing a FAPα activity-based molecular tool would be of great potential for the early diagnosis and therapy of melanoma. However, few fluorescent probes targeting FAPα have been applied in melanoma-related studies, and thus, the construction of FAPα activity-based fluorescent probes for melanoma detection is in urgent need. By incorporating the selective recognition unit with a red-emission fluorophore, cresyl violet, we herein report an ultrasensitive (limit of detection = 5.3 ng/mL) fluorogenic probe for FAPα activity sensing, named CV-FAP; the acquired probe showed a significantly higher binding affinity (15.7-fold) and overall catalytic efficiency (2.6-fold) when compared with those of the best reported FAPα probes. The good performance of CV-FAP made it possible to discriminate malignant melanoma cells and tumor-bearing mice from normal cells and mice with high contrast. More importantly, CV-FAP showed significant antitumor activity toward melanoma in cultured cells and tumor-bearing nude mice (over 95% inhibited tumor growth) with good safety, which made it an ideal theranostic agent for melanoma.


Gelatinases , Melanoma , Animals , Cell Line, Tumor , Endopeptidases , Fluorescent Dyes , Gelatinases/chemistry , Melanoma/diagnostic imaging , Melanoma/metabolism , Membrane Proteins , Mice , Mice, Nude , Serine Endopeptidases/chemistry
2.
Mar Drugs ; 20(1)2022 Jan 03.
Article En | MEDLINE | ID: mdl-35049903

Although the S8 family in the MEROPS database contains many peptidases, only a few S8 peptidases have been applied in the preparation of bioactive oligopeptides. Bovine bone collagen is a good source for preparing collagen oligopeptides, but has been so far rarely applied in collagen peptide preparation. Here, we characterized a novel S8 gelatinase, Aa2_1884, from marine bacterium Flocculibacter collagenilyticus SM1988T, and evaluated its potential application in the preparation of collagen oligopeptides from bovine bone collagen. Aa2_1884 is a multimodular S8 peptidase with a distinct domain architecture from other reported peptidases. The recombinant Aa2_1884 over-expressed in Escherichia coli showed high activity toward gelatin and denatured collagens, but no activity toward natural collagens, indicating that Aa2_1884 is a gelatinase. To evaluate the potential of Aa2_1884 in the preparation of collagen oligopeptides from bovine bone collagen, three enzymatic hydrolysis parameters, hydrolysis temperature, hydrolysis time and enzyme-substrate ratio (E/S), were optimized by single factor experiments, and the optimal hydrolysis conditions were determined to be reaction at 60 ℃ for 3 h with an E/S of 400 U/g. Under these conditions, the hydrolysis efficiency of bovine bone collagen by Aa2_1884 reached 95.3%. The resultant hydrolysate contained 97.8% peptides, in which peptides with a molecular weight lower than 1000 Da and 500 Da accounted for 55.1% and 39.5%, respectively, indicating that the hydrolysate was rich in oligopeptides. These results indicate that Aa2_1884 likely has a promising potential application in the preparation of collagen oligopeptide-rich hydrolysate from bovine bone collagen, which may provide a feasible way for the high-value utilization of bovine bone collagen.


Collagen/chemistry , Gelatinases/pharmacology , Oligopeptides/chemistry , Proteobacteria , Animals , Aquatic Organisms , Gelatinases/chemistry , Hydrolysis , Structure-Activity Relationship
3.
Food Chem ; 355: 129586, 2021 Sep 01.
Article En | MEDLINE | ID: mdl-33773458

In order to invent a porcine gelatine detection device using microbial resources, bacterial enzymes with a preference towards porcine gelatine and their candidate genes were evaluated. Five (n = 5) bacterial strains isolated from hot spring water and wet clay, Malaysia were screened for their gelatinase activity. The gelatinase enzyme was extracted and purified using ammonium sulphate precipitation prior to performing gelatinase assay on porcine, bovine and fish gelatine medium substrates. The G2 strain or Enterobacter aerogenes (Strain EA1) was selected for whole genome sequenced after showing a consistent trend of preference towards porcine gelatine. The gelatinase candidate gene gelEA1_9 was cloned and expressed. Based on one-way analysis of variance (ANOVA) with POST-HOC Duncan test (α = 0.05), the final product of gelEA1_9 was identified as a novel gelatinase. This gelatinase presented no significant difference in activity towards porcine gelatine. Hence, the present study demonstrated an enzyme-substrate interaction for porcine gelatine identification.


Bacterial Proteins/metabolism , Gelatin/metabolism , Gelatinases/metabolism , Amino Acid Sequence , Animals , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Cattle , Enterobacter aerogenes/enzymology , Enterobacter aerogenes/genetics , Fishes/metabolism , Gelatinases/chemistry , Gelatinases/genetics , Gene Expression , RNA, Ribosomal, 16S/genetics , RNA, Ribosomal, 16S/metabolism , Recombinant Proteins/biosynthesis , Recombinant Proteins/isolation & purification , Sequence Alignment , Substrate Specificity , Swine
4.
Cancer Metastasis Rev ; 39(3): 783-803, 2020 09.
Article En | MEDLINE | ID: mdl-32601975

Fibroblast activation protein-α (FAP) is a type-II transmembrane serine protease expressed almost exclusively to pathological conditions including fibrosis, arthritis, and cancer. Across most cancer types, elevated FAP is associated with worse clinical outcomes. Despite the clear association between FAP and disease severity, the biological reasons underlying these clinical observations remain unclear. Here we review basic FAP biology and FAP's role in non-oncologic and oncologic disease. We further explore how FAP may worsen clinical outcomes via its effects on extracellular matrix remodeling, intracellular signaling regulation, angiogenesis, epithelial-to-mesenchymal transition, and immunosuppression. Lastly, we discuss the potential to exploit FAP biology to improve clinical outcomes.


Gelatinases/metabolism , Membrane Proteins/metabolism , Neoplasms/metabolism , Serine Endopeptidases/metabolism , Animals , Endopeptidases , Gelatinases/chemistry , Gelatinases/genetics , Humans , Membrane Proteins/chemistry , Membrane Proteins/genetics , Models, Molecular , Neoplasms/genetics , Neoplasms/pathology , Serine Endopeptidases/chemistry , Serine Endopeptidases/genetics , Structure-Activity Relationship
5.
Adv Biosyst ; 4(8): e2000084, 2020 08.
Article En | MEDLINE | ID: mdl-32597036

Extracellular matrix (ECM) remodeling is emerging as a modulator of neural maturation and axon extension. Most studies have used rodent cells to develop matrices capable of manipulating extracellular matrix remodeling for regenerative applications. However, clinically relevant human induced pluripotent stem cell derived neural stem cells (hNSC) do not always behave in a similar manner as rodent cells. In this study, hNSC response to a hyaluronic acid matrix with laminin derived IKVAV and LRE peptide signaling that has previously shown to promote ECM remodeling and neurite extension by mouse embryonic stem cells is examined. The addition of enzymatically degradable cross linker GPQGIWGQ to the IKVAV and LRE containing hyaluronic acid matrix is necessary to promote neurite extension, hyaluronic acid degradation, and gelatinase expression over hyaluronic acid matrices containing GPQGIWGQ, IKVAV and LRE, or no peptides. Changes in peptide content alters a number of matrix properties that can contribute to the cellular response, but increases in mesh size are not observed with cross linker cleavage in this study. Overall, these data imply a complex interaction between IKVAV, LRE, and GPQGIWGQ to modulate hNSC behavior.


Extracellular Matrix/chemistry , Induced Pluripotent Stem Cells/drug effects , Neural Stem Cells/drug effects , Oligopeptides/pharmacology , Signal Transduction , Amino Acid Sequence , Cell Differentiation/drug effects , Cell Proliferation/drug effects , Extracellular Matrix/metabolism , Gelatinases/chemistry , Gelatinases/metabolism , Humans , Hyaluronic Acid/chemistry , Hyaluronic Acid/metabolism , Induced Pluripotent Stem Cells/cytology , Induced Pluripotent Stem Cells/metabolism , Laminin/pharmacology , Neural Stem Cells/cytology , Neural Stem Cells/metabolism
6.
Biochim Biophys Acta Proteins Proteom ; 1868(7): 140409, 2020 07.
Article En | MEDLINE | ID: mdl-32171757

Fibroblast activation protein (FAP) is a non-classical serine protease expressed predominantly in conditions accompanied by tissue remodeling, particularly cancer. Due to its plasma membrane localization, FAP represents a promising molecular target for tumor imaging and treatment. The unique enzymatic activity of FAP facilitates development of diagnostic and therapeutic tools based on molecular recognition of FAP by substrates and small-molecule inhibitors, in addition to conventional antibody-based strategies. In this review, we provide background on the pathophysiological role of FAP and discuss its potential for diagnostic and therapeutic applications. Furthermore, we present a detailed analysis of the structural patterns crucial for substrate and inhibitor recognition by the FAP active site and determinants of selectivity over the related proteases dipeptidyl peptidase IV and prolyl endopeptidase. We also review published data on targeting of the tumor microenvironment with FAP antibodies, FAP-targeted prodrugs, activity-based probes and small-molecule inhibitors. We describe use of a recently developed, selective FAP inhibitor with low-nanomolar potency in inhibitor-based targeting strategies including synthetic antibody mimetics based on hydrophilic polymers and inhibitor conjugates for PET imaging. In conclusion, recent advances in understanding of the molecular structure and function of FAP have significantly contributed to the development of several tools with potential for translation into clinical practice.


Fibroblasts/metabolism , Gelatinases/metabolism , Membrane Proteins/metabolism , Serine Endopeptidases/metabolism , Catalytic Domain , Dipeptidyl Peptidase 4/metabolism , Endopeptidases , Gelatinases/chemistry , Gelatinases/drug effects , Humans , Membrane Proteins/chemistry , Membrane Proteins/drug effects , Molecular Structure , Neoplasms/diagnosis , Neoplasms/metabolism , Neoplasms/therapy , Prodrugs , Prolyl Oligopeptidases , Serine Endopeptidases/chemistry , Serine Endopeptidases/drug effects , Substrate Specificity , Tumor Microenvironment
7.
Angew Chem Int Ed Engl ; 58(43): 15287-15294, 2019 10 21.
Article En | MEDLINE | ID: mdl-31402550

Tumor complexity makes the development of highly sensitive tumor imaging probes an arduous task. Here, we construct a peptide-based near-infrared probe that is responsive to fibroblast activation protein-α (FAP-α), and specifically forms nanofibers on the surface of cancer-associated fibroblasts (CAFs) in situ. The assembly/aggregation-induced retention (AIR) effect results in enhanced accumulation and retention of the probe around the tumor, resulting in a 5.5-fold signal enhancement in the tumor 48 h after administration compared to that of a control molecule that does not aggregate. The probe provides a prolonged detectable window of 48 h for tumor diagnosis. The selective assembly of the probe results in a signal intensity over four- and fivefold higher in tumor than in the liver and kidney, respectively. With enhanced tumor imaging capability, this probe can visualize small tumors around 2 mm in diameter.


Gelatinases/metabolism , Membrane Proteins/metabolism , Nanofibers/chemistry , Peptides/metabolism , Serine Endopeptidases/metabolism , Spectroscopy, Near-Infrared/methods , Amino Acid Sequence , Animals , Cancer-Associated Fibroblasts/cytology , Cancer-Associated Fibroblasts/metabolism , Cell Line, Tumor , Coculture Techniques , Endopeptidases , Fluorescent Dyes/chemistry , Gelatinases/chemistry , Humans , Membrane Proteins/chemistry , Mice , Mice, Nude , Microscopy, Electron, Scanning , Neoplasms/diagnostic imaging , Peptides/chemical synthesis , Peptides/chemistry , Serine Endopeptidases/chemistry , Tissue Distribution , Transplantation, Heterologous
8.
J Basic Microbiol ; 59(8): 846-852, 2019 Aug.
Article En | MEDLINE | ID: mdl-31215677

In the present study, 20 psychrotolerant yeast species isolated from the soils of King George Island in the sub-Antarctic region were evaluated for the production of extracellular gelatinase, an enzyme with high potential for applications in diverse areas, such as food and medicine. The production of extracellular gelatinase was confirmed in the yeasts Metschnikowia sp., Leucosporidium fragarium, and Mrakia sp., the last one being the yeast in which the highest gelatinase activity was detected. The enzyme was purified from cultures of Mrakia sp., and the effect of different physical-chemical factors on its activity was determined. The gelatinase produced by Mrakia sp. would correspond to a protein of relative molecular weight (rMW) 37,000, which displayed the highest activity at 36°C, pH 7.0, 10 mM CaCl 2 , and 5 mM ZnSO 4 .


Basidiomycota/enzymology , Fungal Proteins/metabolism , Gelatinases/metabolism , Antarctic Regions , Basidiomycota/metabolism , Calcium Chloride , Fungal Proteins/chemistry , Fungal Proteins/isolation & purification , Gelatinases/chemistry , Gelatinases/isolation & purification , Hydrogen-Ion Concentration , Metschnikowia/enzymology , Metschnikowia/metabolism , Molecular Weight , Temperature , Zinc Sulfate
9.
J Nucl Med ; 60(10): 1421-1429, 2019 10.
Article En | MEDLINE | ID: mdl-30850501

Cancer-associated fibroblasts constitute a vital subpopulation of the tumor stroma and are present in more than 90% of epithelial carcinomas. The overexpression of the serine protease fibroblast activation protein (FAP) allows a selective targeting of a variety of tumors by inhibitor-based radiopharmaceuticals (FAPIs). Of these compounds, FAPI-04 has been recently introduced as a theranostic radiotracer and demonstrated high uptake into different FAP-positive tumors in cancer patients. To enable the delivery of higher doses, thereby improving the outcome of a therapeutic application, several FAPI variants were designed to further increase tumor uptake and retention of these tracers. Methods: Novel quinoline-based radiotracers were synthesized by organic chemistry and evaluated in radioligand binding assays using FAP-expressing HT-1080 cells. Depending on their in vitro performance, small-animal PET imaging and biodistribution studies were performed on HT-1080-FAP tumor-bearing mice. The most promising compounds were used for clinical PET imaging in 8 cancer patients. Results: Compared with FAPI-04, 11 of 15 FAPI derivatives showed improved FAP binding in vitro. Of these, 7 compounds demonstrated increased tumor uptake in tumor-bearing mice. Moreover, tumor-to-normal-organ ratios were improved for most of the compounds, resulting in images with higher contrast. Notably two of the radiotracers, FAPI-21 and -46, displayed substantially improved ratios of tumor to blood, liver, muscle, and intestinal uptake. A first diagnostic application in cancer patients revealed high intratumoral uptake of both radiotracers already 10 min after administration but a higher uptake in oral mucosa, salivary glands, and thyroid for FAPI-21. Conclusion: Chemical modification of the FAPI framework enabled enhanced FAP binding and improved pharmacokinetics in most of the derivatives, resulting in high-contrast images. Moreover, higher doses of radioactivity can be delivered while minimizing damage to healthy tissue, which may improve therapeutic outcome.


Gelatinases/chemistry , Membrane Proteins/chemistry , Neoplasms/diagnostic imaging , Neoplasms/therapy , Quinolines/pharmacokinetics , Radiopharmaceuticals/pharmacokinetics , Serine Endopeptidases/chemistry , Animals , Cell Line , Cell Line, Tumor , Chelating Agents/pharmacology , Endopeptidases , Humans , Image Processing, Computer-Assisted , Mice , Mice, Inbred BALB C , Mice, Nude , Neoplasm Transplantation , Positron-Emission Tomography , Protein Binding , Quinolines/chemistry , Solvents , Treatment Outcome
10.
Fish Shellfish Immunol ; 86: 213-222, 2019 Mar.
Article En | MEDLINE | ID: mdl-30453047

Matrix metalloproteinases (MMPs) are a family of endopeptidases collectively able to degrade the components of the extracellular matrix (ECM), with important roles in many biological processes, such as embryogenesis, normal tissue remodelling, angiogenesis and wound healing. New views on the function of MMPs reveal that they regulate inflammatory response and therefore might represent an early step in the evolution of the immune system. MMPs can affect the activity of cytokines involved in inflammation including TGF-ß and TNF-α. MMPs are widely distributed in all kingdoms of life and have likely evolved from a single-domain protein which underwent successive rounds of duplications. In this study, we focused on the Ciona robusta (formerly known as Ciona intestinalis) MMP gelatinase homologue. Gene organization, phylogenetic analysis and 3D modeling supported the closest correlation of C. robusta gelatinase with the human MMP-9. Real-time PCR analysis and zymographic assay showed a prompt expression induced by LPS inoculation and an upregulation of enzymatic activity. Furthermore, we showed that before of the well-known increase of TGF-ß and TNF-α levels, a MMP-9like boost occurred, suggesting a possible involvement of MMP-9like in regulating inflammatory response in C. robusta.


Ciona intestinalis/enzymology , Inflammation/enzymology , Matrix Metalloproteinases/genetics , Animals , Ciona intestinalis/genetics , Gelatinases/chemistry , Gelatinases/genetics , Inflammation/chemically induced , Lipopolysaccharides/toxicity , Matrix Metalloproteinases/chemistry , Models, Molecular , Phylogeny , Transforming Growth Factor beta/metabolism , Tumor Necrosis Factor-alpha/metabolism
11.
ACS Chem Biol ; 13(12): 3333-3342, 2018 12 21.
Article En | MEDLINE | ID: mdl-30489064

Identifying protein targets of bioactive small molecules often requires complex, lengthy development of affinity probes. We present a method for stochastic modification of small molecules of interest with a photoactivatable phenyldiazirine linker. The resulting isomeric mixture is conjugated to a hydrophilic copolymer decorated with biotin and a fluorophore. We validated this approach using known inhibitors of several medicinally relevant enzymes. At least a portion of the stochastic derivatives retained their binding to the target, enabling target visualization, isolation, and identification. Moreover, the mix of stochastic probes could be separated into fractions and tested for binding affinity. The structure of the active probe could be determined and the probe resynthesized to improve binding efficiency. Our approach can thus enable rapid target isolation, identification, and visualization, while providing information required for subsequent synthesis of an optimized probe.


Affinity Labels/chemistry , Aspartic Acid Endopeptidases/chemistry , Diazomethane/analogs & derivatives , Gelatinases/chemistry , Glutamate Carboxypeptidase II/chemistry , Membrane Proteins/chemistry , Proteomics/methods , Serine Endopeptidases/chemistry , Affinity Labels/chemical synthesis , Affinity Labels/radiation effects , Aspartic Acid Endopeptidases/antagonists & inhibitors , Biotin/chemistry , Cell Line, Tumor , Diazomethane/chemical synthesis , Diazomethane/radiation effects , Endopeptidases , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/radiation effects , Fluoresceins/chemistry , Fluorescent Dyes/chemistry , Gelatinases/antagonists & inhibitors , Glutamate Carboxypeptidase II/antagonists & inhibitors , Humans , Mass Spectrometry/methods , Membrane Proteins/antagonists & inhibitors , Microscopy, Confocal/methods , Polymethacrylic Acids/chemistry , Ultraviolet Rays
12.
ACS Sens ; 3(9): 1846-1854, 2018 09 28.
Article En | MEDLINE | ID: mdl-30188115

Traditional photoluminescence resonance energy transfer (PRET)-based sensors are widely applied, but still suffer from the severe background interference from in situ excitation. The afterglow nature of the persistent luminescence nanoparticles (PLNPs) allows optosensing after the stoppage of in situ illumination, and thus subtly overcomes that interference. We proposed a simple strategy for functionalizing PLNPs for bioanalytical applications and the new afterglow resonance energy transfer (ARET)-based assay for quantitative determination and imaging of fibroblast activation protein-alpha (FAPα) in live cells using Au-decorated Cr3+0.004:ZnGa2O4 as donor and Cy5.5-KGPNQC-SH as acceptor. The ARET between the donor and acceptor quenches the afterglow of the donor, and the cleavage of peptide KGPNQC by FAPα inhibits the ARET and restores the afterglow of the donor. The ARET-based assay of FAPα, with the linear range of 0.1-2.0 mg·L-1 (1.2-22.9 nM), LOD of 11 µg·L-1 (115 pM), and RSD of 3.9% (for 0.5 mg·L-1 FAPα, n = 5), displays higher sensitivity, lower limit of detection (LOD), and better anti-interference capability than the corresponding PRET-based assay. Besides, the ARET-based sensors are lighted up by the FAPα-positive U87MG and MDA-MB-435 cells, but kept in the dark when incubated in the FAPα-negative AD293 cells. The proposed ARET-based sensor can detect FAPα of U87MG and MDA-MB-435 living cells in human serum with the spiked recoveries of 95.6-103%. Our data demonstrated a simple and effective strategy for bridging PLNPs to bioanalytical applications, and an attractive ARET assay of FAPα.


Enzyme Assays/methods , Gelatinases/blood , Luminescent Measurements/methods , Membrane Proteins/blood , Serine Endopeptidases/blood , Carbocyanines/chemistry , Cell Line, Tumor , Endopeptidases , Energy Transfer , Fluorescent Dyes/chemistry , Gelatinases/chemistry , Humans , Limit of Detection , Membrane Proteins/chemistry , Metal Nanoparticles/chemistry , Metals, Heavy/chemistry , Oligopeptides/chemistry , Serine Endopeptidases/chemistry
13.
ChemMedChem ; 13(13): 1343-1352, 2018 07 06.
Article En | MEDLINE | ID: mdl-29893479

Targeting matrix metalloproteinases (MMPs) is a pursued strategy for treating several pathological conditions, such as multiple sclerosis and cancer. Herein, a series of novel tetrahydro-ß-carboline derivatives with outstanding inhibitory activity toward MMPs are present. In particular, compounds 9 f, 9 g, 9 h and 9 i show sub-nanomolar IC50 values. Interestingly, compounds 9 g and 9 i also provide remarkable selectivity toward gelatinases; IC50 =0.15 nm for both toward MMP-2 and IC50 =0.63 and 0.58 nm, respectively, toward MMP-9. Molecular docking simulations, performed by employing quantum mechanics based partial charges, shed light on the rationale behind binding involving specific interactions with key residues of S1' and S3' domains. Taken together, these studies indicate that tetrahydro-ß-carboline represents a promising scaffold for the design of novel inhibitors able to target MMPs and selectively bias gelatinases, over the desirable range of the pharmacokinetics spectrum.


Carbolines/chemistry , Gelatinases/antagonists & inhibitors , Matrix Metalloproteinase Inhibitors/chemistry , Carbolines/chemical synthesis , Carbolines/pharmacokinetics , Drug Design , Enzyme Assays , Gelatinases/chemistry , Humans , Matrix Metalloproteinase 2/chemistry , Matrix Metalloproteinase 9/chemistry , Matrix Metalloproteinase Inhibitors/chemical synthesis , Matrix Metalloproteinase Inhibitors/pharmacokinetics , Molecular Docking Simulation , Stereoisomerism
14.
Acta Histochem ; 120(2): 136-141, 2018 Feb.
Article En | MEDLINE | ID: mdl-29373132

Matrix metalloproteinases (MMPs) such as gelatinases are differentially expressed in human tissues. These enzymes cleave specific substrates involved in cell signaling, tissue development and remodeling and tissue breakdown. Recent evidences show that gelatinases are crucial for normal dentin development and their activity is maintained throughout the entire tooth function in the oral cavity. Due to the lack of information about the exact location and activity of gelatinases in mature human dentin, the present study was designed to examine gelatinolytic levels in sound dentin. In situ zymography using confocal microscopy was performed on both mineralized and demineralized dentin samples. Sites presenting gelatinase activity were identified throughout the entire biological tissue pursuing different gelatinolytic levels for distinct areas: predentin and dentinal tubule regions presented higher gelatinolytic activity compared to intertubular dentin. Dentin regions with higher gelatinolytic activity immunohistochemically were partially correlated with MMP-2 expression. The maintenance of gelatinolytic activity in mature dentin may have biological implications related to biomineralization of predentin and tubular/peritubular dentinal regions, as well as regulation of defensive mechanisms of the dentin-pulp complex.


Dentin/enzymology , Gelatinases , Adolescent , Gelatinases/chemistry , Gelatinases/metabolism , Humans , Immunohistochemistry , Microscopy, Confocal , Young Adult
15.
J Mol Microbiol Biotechnol ; 27(6): 319-331, 2017.
Article En | MEDLINE | ID: mdl-29197868

A protein showing endoglucanase-peptidase activity was prepared from a newly isolated bacterium (ST15c10). We identified ST15c10 as Brevibacillus agri based on electron-microscopic images and its 16S-rDNA sequence (GenBank accession No. HM446043), which exhibits 98.9% sequence identity to B. agri (KZ17)/B. formosus (DSM-9885T)/B. brevis. The enzyme was purified to homogeneity and gave a single peak during high-performance liquid chromatography on a Seralose 6B-150 gel-matrix/C-18 column. MALDI-TOF mass-spectrometry and bioinformatics studies revealed significant similarity to M42-aminopeptidases/endoglucanases of the CelM family. These enzymes are found in all Brevibacillus strains for which the genome sequence is known. ST15c10 grows optimally on carboxymethyl cellulose (CMC)-gelatin (40°C/pH 8-9), and also shows strong growth/carboxymethyl cellulase (CMCase) activity in submerged bagasse fermentation. The purified enzyme also functions as endoglucanase with solid bagasse/rice straw. Its CMCase activity (optimal at pH 5.6 and 60°C/Km = 35.5 µM/Vmax = 1,024U) was visualized by zymography on a CMC-polyacrylamide gel, which provided a strong band of approximately 70 kDa. The purified enzyme also showed strong peptidase (gelatinase) activity (pH 7.2/40°C during zymography on 6-12% gelatin/1% gelatin-PAGE (at approx. 70 kDa). The CMCase activity is inhibited by the metal ions Mn/Cu/Fe/Co (50%), Hg/KMnO4 (100%), and by glucose or lactose (50-75%; all at 1 mM). The observed dose/time-dependent inhibition by Hg ions could be prevented with 2-mercaptoethanol. A comparison of the B. agri endoglucanase-aminopeptidase (ELK43520; 350 aa) with other members of the M42-family revealed the conservation of active-site residues Cys256/Cys260, which were previously identified as metal-binding sites. Regulation of the endoglucanase activity probably occurs via metal binding-triggered changes in the redox state of the enzyme. Studies on this type of enzyme are of high importance for basic scientific and industrial research.


Brevibacillus/enzymology , Cellulase/isolation & purification , Cellulase/metabolism , Gelatinases/isolation & purification , Gelatinases/metabolism , Amino Acid Sequence , Aminopeptidases , Base Sequence , Brevibacillus/genetics , Brevibacillus/isolation & purification , Brevibacillus/physiology , Carboxymethylcellulose Sodium/metabolism , Cellulase/chemistry , Cellulose/metabolism , DNA, Ribosomal/genetics , Enzyme Stability , Fermentation , Gelatinases/chemistry , Hydrogen-Ion Concentration , Metals , Models, Molecular , Molecular Weight , Oryza , Protein Conformation , Substrate Specificity , Temperature
16.
J Med Chem ; 60(20): 8385-8393, 2017 10 26.
Article En | MEDLINE | ID: mdl-28953383

Proteases are directly involved in cancer pathogenesis. Expression of fibroblast activation protein (FAP) is upregulated in stromal fibroblasts in more than 90% of epithelial cancers and is associated with tumor progression. FAP expression is minimal or absent in most normal adult tissues, suggesting its promise as a target for the diagnosis or treatment of various cancers. Here, we report preparation of a polymer conjugate (an iBody) containing a FAP-specific inhibitor as the targeting ligand. The iBody inhibits both human and mouse FAP with low nanomolar inhibition constants but does not inhibit close FAP homologues dipeptidyl peptidase IV, dipeptidyl peptidase 9, and prolyl oligopeptidase. We demonstrate the applicability of this iBody for the isolation of FAP from cell lysates and blood serum as well as for its detection by ELISA, Western blot, flow cytometry, and confocal microscopy. Our results show the iBody is a useful tool for FAP targeting in vitro and potentially also for specific anticancer drug delivery.


Gelatinases/antagonists & inhibitors , Membrane Proteins/antagonists & inhibitors , Polymers/chemistry , Animals , Blotting, Western , Cell Line, Tumor , Endopeptidases , Enzyme-Linked Immunosorbent Assay , Flow Cytometry , Gelatinases/chemistry , Humans , Membrane Proteins/chemistry , Mice , Microscopy, Confocal , Serine Endopeptidases/chemistry , Spectrometry, Mass, Electrospray Ionization
17.
Pathog Dis ; 75(7)2017 09 29.
Article En | MEDLINE | ID: mdl-28830077

HYL-20 (GILSSLWKKLKKIIAK-NH2) is an analogue of a natural antimicrobial peptide (AMP) previously isolated from the venom of wild bee. We examined its antimicrobial activity against three strains of Enterococcus faecalis while focusing on its susceptibility to proteolytic degradation by two known proteases-gelatinase (GelE) and serine protease (SprE)-which are secreted by these bacterial strains. We found that HYL-20 was primarily deamidated at its C-terminal which made the peptide susceptible to consecutive intramolecular cleavage by GelE. Further study utilising 1,10-phenanthroline, a specific GelE inhibitor and analogous peptide with D-Lys at its C-terminus (HYL-20k) revealed that the C-terminal deamidation of HYL-20 is attributed to not yet unidentified protease which also cleaves internal peptide bonds of AMPs. In contrast to published data, participation of SprE in the protective mechanism of E. faecalis against AMPs was not proved. The resistance of HYL-20k to C-terminal deamidation and subsequent intramolecular cleavage has resulted in increased antimicrobial activity against E. faecalis grown in planktonic and biofilm form when compared to HYL-20.


Anti-Bacterial Agents/pharmacology , Antimicrobial Cationic Peptides/pharmacology , Bacterial Proteins/metabolism , Enterococcus faecalis/drug effects , Gelatinases/metabolism , Serine Endopeptidases/metabolism , Amino Acid Sequence , Amino Acid Substitution , Animals , Anti-Bacterial Agents/chemical synthesis , Anti-Bacterial Agents/metabolism , Antimicrobial Cationic Peptides/chemical synthesis , Antimicrobial Cationic Peptides/metabolism , Bacterial Proteins/antagonists & inhibitors , Bacterial Proteins/chemistry , Bees/chemistry , Bees/physiology , Biofilms/drug effects , Biofilms/growth & development , Enterococcus faecalis/enzymology , Enterococcus faecalis/growth & development , Enterococcus faecalis/ultrastructure , Enzyme Inhibitors/pharmacology , Gelatinases/antagonists & inhibitors , Gelatinases/chemistry , Microbial Sensitivity Tests , Phenanthrolines/pharmacology , Plankton/drug effects , Plankton/enzymology , Plankton/growth & development , Plankton/ultrastructure , Proteolysis , Serine Endopeptidases/chemistry , Structure-Activity Relationship
18.
Biochem Pharmacol ; 138: 81-95, 2017 08 15.
Article En | MEDLINE | ID: mdl-28506758

Preeclampsia is a complication of pregnancy manifested as hypertension-in-pregnancy (HTN-Preg) and often intrauterine growth restriction (IUGR). Placental ischemia could be an initiating event, but the molecular mechanisms are unclear. To test the hypothesis that dimerization of matrix metalloproteinases (MMPs) plays a role in HTN-Preg and IUGR, the levels/activity of MMP-9, tissue inhibitor of metalloproteinase (TIMP-1), and their dimerization forms were measured in the placenta, uterus, and uterine artery of normal pregnant (Preg) rats and a rat model of reduced uteroplacental perfusion pressure (RUPP). Consistent with our previous report, blood pressure (BP) was higher, pup weight was lower, and gelatin zymography showed different gelatinolytic activity for pro-MMP-9, MMP-9, pro-MMP-2 and MMP-2 in RUPP vs Preg rats. Careful examination of the zymograms showed additional bands at 200 and 135kDa. Western blots with MMP-9 antibody suggested that the 200kDa band was a MMP-9 homodimer. Western blots with TIMP-1 antibody as well as reverse zymography suggested that the 135kDa band was a MMP-9/TIMP-1 complex. The protein levels and gelatinase activity of MMP-9 homodimer were decreased while MMP-9/TIMP-1 complex was increased in placenta, uterus and uterine artery of RUPP vs Preg rats. The epidermal growth factor (EGF) receptor blocker erlotinib and protein kinase C (PKC) inhibitor bisindolylmaleimide decreased MMP-9 homodimer and increased MMP-9/TIMP-1 complex in placenta, uterus and uterine artery of Preg rats. EGF and the PKC activator phorbol-12,13-dibutyrate (PDBu) reversed the decreases in MMP-9 homodimer and the increases in MMP-9/TIMP-1 complex in tissues of RUPP rats. Thus, the increased BP and decreased pup weight in placental ischemia model of HTN-Preg are associated with a decrease in MMP-9 homodimer and an increase in MMP-9/TIMP-1 complex in placenta, uterus, and uterine artery, which together would cause a net decrease in MMP-9 activity and reduce uteroplacental and vascular remodeling in the setting of HTN-Preg and IUGR. Enhancing EGFR/PKC signaling may reverse the MMP-9 unfavorable dimerization patterns and thereby promote uteroplacental and vascular remodeling in preeclampsia.


Disease Models, Animal , Hypertension, Pregnancy-Induced/metabolism , Matrix Metalloproteinase 9/metabolism , Placenta/metabolism , Tissue Inhibitor of Metalloproteinase-1/metabolism , Uterine Artery/metabolism , Uterus/metabolism , Animals , Dimerization , Enzyme Activators/pharmacology , Enzyme Precursors/chemistry , Enzyme Precursors/metabolism , Female , Fetal Growth Retardation/etiology , Gelatinases/chemistry , Gelatinases/metabolism , Hypertension, Pregnancy-Induced/physiopathology , Matrix Metalloproteinase 2/chemistry , Matrix Metalloproteinase 2/metabolism , Matrix Metalloproteinase 9/chemistry , Placenta/blood supply , Placenta/drug effects , Pre-Eclampsia/etiology , Pregnancy , Protein Kinase Inhibitors/pharmacology , Protein Multimerization/drug effects , Rats, Sprague-Dawley , Tissue Culture Techniques , Tissue Inhibitor of Metalloproteinase-1/chemistry , Uterine Artery/drug effects , Uterus/blood supply , Uterus/drug effects , Vascular Remodeling
19.
Biomaterials ; 116: 57-68, 2017 02.
Article En | MEDLINE | ID: mdl-27914267

Poor tumor-targeted and cytoplasmic delivery is a bottleneck for protein toxin-based cancer therapy. Ideally, a protein toxin drug should remain stealthy in circulation for prolonged half-life and reduced side toxicity, but turn activated at tumor. PEGylation is a solution to achieve the first goal, but creates a hurdle for the second because PEG rejects interaction between the drugs and tumor cells therein. Such PEG dilemma is an unsolved problem in protein delivery. Herein proposed is a concept of turning PEG dilemma into prodrug-like feature. A site-selectively PEGylated, gelatinase-triggered cell-penetrating trichosanthin protein delivery system is developed with three specific aims. The first is to develop an intein-based ligation method for achieving site-specific modification of protein toxins. The second is to develop a prodrug feature that renders protein toxins remaining stealthy in blood for reduced side toxicity and improved EPR effect. The third is to develop a gelatinase activatable cell-penetration strategy for enhanced tumor targeting and cytoplasmic delivery. Of note, site-specific modification is a big challenge in protein drug research, especially for such a complicated, multifunctional protein delivery system. We successfully develop a protocol for constructing a macromolecular prodrug system with intein-mediated ligation synthesis. With an on-column process of purification and intein-mediated cleavage, the site-specific PEGylation then can be readily achieved by conjugation with the activated C-terminus, thus constructing a PEG-capped, cell-penetrating trichosanthin system with a gelatinase-cleavable linker that enables tumor-specific activation of cytoplasmic delivery. It provides a promising method to address the PEG dilemma for enhanced protein drug delivery, and importantly, a facile protocol for site-specific modification of such a class of protein drugs for improving their druggability and industrial translation.


Drug Delivery Systems/methods , Gelatinases/chemistry , Inteins , Neoplasms, Experimental/chemistry , Neoplasms, Experimental/drug therapy , Polyethylene Glycols/chemistry , Trichosanthin/administration & dosage , Animals , Antineoplastic Agents, Phytogenic/administration & dosage , Cell Line, Tumor , Mice , Neoplasms, Experimental/pathology , Prodrugs/administration & dosage , Prodrugs/chemistry , Treatment Outcome
20.
Mol Cell Biochem ; 427(1-2): 111-122, 2017 Mar.
Article En | MEDLINE | ID: mdl-28013477

Matrix metalloproteinases (MMPs) play a crucial role in developing different types of lung diseases, e.g., pulmonary arterial hypertension (PAH). Green tea polyphenolic catechins such as EGCG and ECG have been shown to ameliorate various types of diseases including PAH. Our present study revealed that among the four green tea catechins (EGCG, ECG, EC, and EGC), EGCG and ECG inhibit pro-/active MMP-2 activities in pulmonary artery smooth muscle cell (PASMC) culture supernatant. Based on the above, we investigated the interactions of pro-/active MMP-2 with the green tea catechins by computational methods. In silico analysis revealed a strong interaction of pro-/active MMP-2 with EGCG/ECG, and galloyl group has been observed to be responsible for this interaction. The in silico analysis corroborated our experimental observation that EGCG and ECG are active in preventing both the proMMP-2 and MMP-2 activities. Importantly, these two catechins appeared to be better inhibitors for proMMP-2 in comparison to MMP-2 as revealed by gelatin zymogram and also by molecular docking studies. In many type of cells, activation of proMMP-2 occurs via an increase in the level of MT1-MMP (MMP-14). We, therefore, determined the interactions of MT1-MMP with the green tea catechins by molecular docking analysis. The study revealed a strong interaction of MT1-MMP with EGCG/ECG, and galloyl group has been observed to be responsible for the interaction.


Catechin , Enzyme Precursors , Gelatinases , Matrix Metalloproteinase 2 , Molecular Docking Simulation , Protease Inhibitors , Tea/chemistry , Animals , Catechin/chemistry , Catechin/pharmacology , Cattle , Enzyme Precursors/antagonists & inhibitors , Enzyme Precursors/chemistry , Enzyme Precursors/metabolism , Gelatinases/antagonists & inhibitors , Gelatinases/chemistry , Gelatinases/metabolism , Humans , Matrix Metalloproteinase 2/chemistry , Matrix Metalloproteinase 2/metabolism , Muscle, Smooth, Vascular/enzymology , Myocytes, Smooth Muscle/enzymology , Protease Inhibitors/chemistry , Protease Inhibitors/pharmacology
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