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1.
Microbiol Spectr ; 10(3): e0032122, 2022 06 29.
Artículo en Inglés | MEDLINE | ID: mdl-35658602

RESUMEN

The hemin acquisition system of Stenotrophomonas maltophilia was elucidated in this study. To identify the TonB-dependent outer membrane receptor for hemin in S. maltophilia, the hemin acquisition systems of Pseudomonas aeruginosa were referenced. PhuR, HasA, and HxuA are three known TonB-dependent outer membrane receptors involved in hemin acquisition by P. aeruginosa. Thus, HemA (Smlt0795) and Smlt2937, the orthologs of PhuR and HasA/HxuA in S. maltophilia, were first considered. KJΔEnt, a stenobactin-null strain, was used as the parental strain for the hemin utilization assay. Deletion of hemA, but not Smlt2937, of KJΔEnt impaired hemin acquisition under iron-depleted conditions, indicating that HemA is the TonB-dependent receptor for hemin uptake. The hemA gene is a member of the hemP-hemA-smlt0796-smlt0797 operon, whose expression was upregulated in a fur mutant and under iron-depleted conditions. The contribution of the hemP-hemA-smlt0796-smlt0797 operon to hemin acquisition was investigated by in-frame deletion mutant construction and hemin utilization assays. Inactivation of hemP, smlt0796, and smlt0797 of KJΔEnt insignificantly affected hemin acquisition under iron-depleted conditions. However, hemP deletion in a fur mutant increased hemin acquisition under iron-depleted conditions. Collectively, we revealed that (i) HemA likely functions as the outer membrane receptor for hemin uptake; (ii) HemP, a predicted transcriptional factor, apparently functions as a repressor of the expression of the hemA transcript; and (iii) in a fur mutant, HemP has a negative impact on hemin acquisition under iron-depleted conditions. IMPORTANCE Stenotrophomonas maltophilia is an emerging multidrug-resistant opportunistic pathogen, increasing the difficulty of treatment of this infection. Iron is a critical element for bacterial viability. Heme is the most abundant iron source in the human host; thus, heme is the major iron source for a pathogen in the infection niche. Blocking iron acquisition from heme can be an alternative strategy to control S. maltophilia infection. Although several hemin acquisition systems have been reported in various pathogens, very little is known about the hemin acquisition systems of S. maltophilia. By in-frame deletion mutant construction and hemin utilization assays, we demonstrated that HemA (Smlt0795) is the TonB-dependent outer membrane receptor for hemin uptake and that HemP (Smlt0794), a predicted transcriptional factor, had a negative impact on hemin acquisition in a fur mutant. The negative regulatory role of HemP in hemin acquisition is first reported.


Asunto(s)
Cannabis , Stenotrophomonas maltophilia , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Cannabis/genética , Cannabis/metabolismo , Proteínas Portadoras/metabolismo , Regulación Bacteriana de la Expresión Génica , Hemo/metabolismo , Hemina/genética , Hemina/metabolismo , Humanos , Hierro/metabolismo , Operón , Stenotrophomonas maltophilia/genética
2.
J Mol Biol ; 432(13): 3869-3880, 2020 06 12.
Artículo en Inglés | MEDLINE | ID: mdl-32339530

RESUMEN

Pseudomonas aeruginosa is a priority pathogen for the development of new antibiotics, particularly because multi-drug-resistant strains of this bacterium cause serious nosocomial infections and are the leading cause of death in cystic fibrosis patients. Pyocins, bacteriocins of P. aeruginosa, are potent and diverse protein antibiotics that are deployed during bacterial competition. Pyocins are produced by more than 90% of P. aeruginosa strains and may have utility as last resort antibiotics against this bacterium. In this study, we explore the antimicrobial activity of a newly discovered pyocin called pyocin G (PyoG). We demonstrate that PyoG has broad killing activity against a collection of clinical P. aeruginosa isolates and is active in a Galleria mellonella infection model. We go on to identify cell envelope proteins that are necessary for the import of PyoG and its killing activity. PyoG recognizes bacterial cells by binding to Hur, an outer-membrane TonB-dependent transporter. Both pyocin and Hur interact with TonB1, which in complex with ExbB-ExbD links the proton motive force generated across the inner membrane with energy-dependent pyocin translocation across the outer membrane. Inner-membrane translocation of PyoG is dependent on the conserved inner-membrane AAA+ ATPase/protease, FtsH. We also report a functional exploration of the PyoG receptor. We demonstrate that Hur can bind to hemin in vitro and that this interaction is blocked by PyoG, confirming the role of Hur in hemin acquisition.


Asunto(s)
Hemina/genética , Infecciones por Pseudomonas/microbiología , Pseudomonas aeruginosa/genética , Piocinas/farmacología , ATPasas Asociadas con Actividades Celulares Diversas/genética , Antibacterianos/farmacología , Proteínas Bacterianas/genética , Bacteriocinas/química , Bacteriocinas/farmacología , Resistencia a Múltiples Medicamentos/efectos de los fármacos , Humanos , Proteínas de la Membrana/genética , Unión Proteica/efectos de los fármacos , Infecciones por Pseudomonas/tratamiento farmacológico , Infecciones por Pseudomonas/genética , Pseudomonas aeruginosa/patogenicidad , Piocinas/química
3.
Biosens Bioelectron ; 131: 113-118, 2019 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-30826645

RESUMEN

Herein, a label-free and double recognition-amplification (LDRA) strategy for carcinoembryonic antigen (CEA) detection was developed, based on a new designed dual-function messenger probe (DMP) coalescing with DNA tetrahedron probes (DTPs) and hybridization chain reaction (HCR). The DMP possess dual-function to replace CEA for specific interface hybridization and initiate hybridization chain reaction. The interfacial hybridization event was quantitatively converted to an electrochemical signal by using hemin/G-quadruplex (h-Gx) formed after the hybridization chain reaction. Self-assembled DNA tetrahedron probes, which were readily decorated on an electrode surface as a scaffold with rigid support and ordered orientation, enabled the highly efficient strands hybridization and greatly increased target accessibility as well as significantly decreased noise. The proposed assay integrated dual recognition processes and HCR signal amplification processes, achieving the identification of low concentration of CEA as detection limit of 18.2 fg mL-1 (S/N = 3) and wider linearity range of 0.0001 ng mL-1-50 ng mL-1. A new electrochemical sensing method was proposed for CEA detection and used in real clinical samples. The obtained results were good consistency with those of clinical diagnosis.


Asunto(s)
Técnicas Biosensibles , Antígeno Carcinoembrionario/aislamiento & purificación , Técnicas Electroquímicas , Técnicas de Amplificación de Ácido Nucleico , Aptámeros de Nucleótidos , Antígeno Carcinoembrionario/química , ADN Catalítico/química , ADN Catalítico/genética , Electrodos , G-Cuádruplex , Hemina/química , Hemina/genética , Humanos , Límite de Detección , Hibridación de Ácido Nucleico
4.
Biochemistry ; 58(4): 189-198, 2019 01 29.
Artículo en Inglés | MEDLINE | ID: mdl-30481000

RESUMEN

Single-stranded microRNAs (miRNAs) regulate gene expression by triggering mRNA degradation and/or inhibiting mRNA translation. miRNAs play important roles in various critical cellular processes and are associated with numerous human diseases, including cancer and neurodegenerative diseases. miRNA sequences are embedded in the primary miRNA transcripts (pri-miRNAs) that are initially processed by the Microprocessor complex in the nucleus. Microprocessor can orient itself on pri-miRNAs in two ways: one orientation results in subsequent miRNA production, and the other leads to cleavage of the miRNA sequence. Therefore, orienting Microprocessor on pri-miRNAs is a fundamental mechanism for determining the accuracy and efficiency of pri-miRNA processing and, in turn, miRNA production. Multiple mechanisms controlling Microprocessor orientation on pri-miRNAs, involving both cis-acting RNA elements and trans-acting factors, have recently been revealed. In this review, we discuss these exciting mechanisms and consider potential unknown mechanisms that might regulate Microprocessor orientation on pri-miRNAs.


Asunto(s)
MicroARNs/química , MicroARNs/metabolismo , Complejos Multiproteicos/metabolismo , Precursores del ARN/metabolismo , Animales , Proteínas de Drosophila/genética , Proteínas de Drosophila/metabolismo , Hemina/genética , Hemina/metabolismo , Humanos , MicroARNs/genética , Complejos Multiproteicos/genética , Motivos de Nucleótidos , Procesamiento Proteico-Postraduccional , Precursores del ARN/química , Precursores del ARN/genética , Proteínas de Unión al ARN/genética , Proteínas de Unión al ARN/metabolismo , Ribonucleasa III/genética , Ribonucleasa III/metabolismo , Factores de Empalme Serina-Arginina/genética , Factores de Empalme Serina-Arginina/metabolismo
5.
Artículo en Inglés | MEDLINE | ID: mdl-29520342

RESUMEN

Despite the mammalian host actively sequestering iron to limit pathogenicity, heme (or hemin when oxidized) and hemoproteins serve as important sources of iron for many bloodborne pathogens. The HmuRSTUV hemin uptake system allows Yersinia species to uptake and utilize hemin and hemoproteins as iron sources. HmuR is a TonB-dependent outer membrane receptor for hemin and hemoproteins. HmuTUV comprise a inner membrane ABC transporter that transports hemin and hemoproteins from the periplasmic space into the bacterial cytoplasm, where it is degraded by HmuS. Here we show that hmuSTUV but not hmuR are expressed under iron replete conditions, whereas hmuR as well as hmuSTUV are expressed under iron limiting conditions, suggesting complex transcriptional control. Indeed, expression of hmuSTUV in the presence of inorganic iron, but not in the presence of hemin, requires the global regulator IscR acting from a promoter in the intergenic region between hmuR and hmuS. This effect of IscR appears to be direct by binding a site mapped by DNaseI footprinting. In contrast, expression of hmuR under iron limiting conditions requires derepression of the ferric uptake regulator Fur acting from the hmuR promoter, as Fur binding upstream of hmuR was demonstrated biochemically. Differential expression by both Fur and IscR would facilitate maximal hemin uptake and utilization when iron and heme availability is low while maintaining the capacity for periplasmic removal and cytosolic detoxification of heme under a wider variety of conditions. We also demonstrate that a Y. pseudotuberculosis ΔiscR mutant has a survival defect when incubated in whole blood, in which iron is sequestered by heme-containing proteins. Surprisingly, this phenotype was independent of the Hmu system, the type III secretion system, complement, and the ability of Yersinia to replicate intracellularly. These results suggest that IscR regulates multiple virulence factors important for Yersinia survival and growth in mammalian tissues and reveal a surprising complexity of heme uptake expression and function under differing conditions of iron.


Asunto(s)
Hemo/metabolismo , Hemina/genética , Hierro/metabolismo , Infecciones por Yersinia pseudotuberculosis/metabolismo , Infecciones por Yersinia pseudotuberculosis/microbiología , Yersinia pseudotuberculosis/fisiología , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Secuencia de Bases , Sitios de Unión , Regulación Bacteriana de la Expresión Génica , Orden Génico , Sitios Genéticos , Mutación , Regiones Promotoras Genéticas , Unión Proteica , Transcripción Genética , Infecciones por Yersinia pseudotuberculosis/sangre
6.
Biosens Bioelectron ; 99: 209-215, 2018 Jan 15.
Artículo en Inglés | MEDLINE | ID: mdl-28759871

RESUMEN

In the quest of greater sensitivity and specificity of diagnostic systems, one continually searches for alternative DNA hybridization methods, enabling greater versatility and where possible field-enabled detection of target analytes. We present, herein, a hybrid molecular self-assembled scaffolded DNA origami entity, intimately immobilized via capture probes linked to aminopropyltriethoxysilane, onto a glass optical fiber end-face transducer, thus producing a novel biosensor. Immobilized DNA nanorobots with a switchable flap can then be actuated by a specific target DNA present in a sample, by exposing a hemin/G-quadruplex DNAzyme, which then catalyzes the generation of chemiluminescence, once the specific fiber probes are immersed in a luminol-based solution. Integrating organic nanorobots to inorganic fiber optics creates a hybrid system that we demonstrate as a proof-of-principle can be utilized in specific DNA sequence detection. This system has potential applications in a wide range of fields, including point-of-care diagnostics or cellular in vivo biosensing when using ultrathin fiber optic probes for research purposes.


Asunto(s)
Secuencia de Bases/genética , Técnicas Biosensibles , ADN/aislamiento & purificación , ADN/genética , ADN Catalítico/química , ADN Catalítico/genética , G-Cuádruplex , Hemina/química , Hemina/genética , Límite de Detección , Mediciones Luminiscentes , Luminol , Hibridación de Ácido Nucleico , Sistemas de Atención de Punto , Propilaminas/química , Silanos/química
7.
J Infect Chemother ; 23(12): 852-855, 2017 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-28673558

RESUMEN

A hemin-requiring Pseudomonas aeruginosa small-colony variant (SCV) was isolated from the blood of an octogenarian male-patient with double pneumonitis. The isolate was capable of growing on both sheep blood and chocolate agars but not on MacConkey agars without blood ingredient. Furthermore, the isolate revealed to grow only around the X-factor impregnated discs when examined using the X and V disc strips. However, not only RapID-NH system but also the VITEK2 system failed to identify the isolate. The isolate was finally identified as P. aeruginosa by the sequence of the 16S rRNA genes and the MALDI-TOF MS analysis. Interestingly, the isolate represented positive reaction for δ-aminolaevulinic acid (ALA)-test despite the requirement of hemin. Detailed analysis indicated that the isolate produced protoporphyrin IX from ALA. Therefore, the reason for the hemin dependence was deduced the dysfunction of hemH-encoded ferrochelatase behaving at the end of biosynthetic pathway of heme. However, the genetic analysis of hemH gene demonstrated no variations of both the DNA and the amino-acid sequences. To the best of our knowledge, this is the first clinical isolation of a hemin-dependent P. aeruginosa SCV from blood.


Asunto(s)
Neumonía Bacteriana/sangre , Infecciones por Pseudomonas/sangre , Pseudomonas aeruginosa/aislamiento & purificación , Anciano de 80 o más Años , Secuencia de Aminoácidos , Ácido Aminolevulínico/química , Secuencia de Bases , Medios de Cultivo , Hemina/genética , Humanos , Masculino , Protoporfirinas/química , Pseudomonas aeruginosa/genética , ARN Ribosómico 16S/genética , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
8.
Sci Rep ; 6: 37159, 2016 11 15.
Artículo en Inglés | MEDLINE | ID: mdl-27845444

RESUMEN

Riemerella anatipestifer is a duck pathogen that has caused serious economic losses to the duck industry worldwide. Despite this, there are few reported studies of the physiological and pathogenic mechanisms of Riemerella anatipestifer infection. In previous study, we have shown that TonB1 and TonB2 were involved in hemin uptake. TonB family protein (TbfA) was not investigated, since knockout of this gene was not successful at that time. Here, we used a plasmid based gene over-expression and knockdown to investigate its function. First, we constructed three Escherichia-Riemerella anatipestifer shuttle vectors containing three different native Riemerella anatipestifer promoters. The shuttle plasmids were introduced into Riemerella anatipestifer ATCC11845 by conjugation at an efficiency of 5 × 10-5 antibiotic-resistant transconjugants per recipient cell. Based on the high-expression shuttle vector pLMF03, a method for gene knockdown was established. Knockdown of TbfA in Riemerella anatipestifer ATCC11845 decreased the organism's growth ability in TSB medium but did not affect its hemin utilization. In contrast, over-expression of TbfA in Riemerella anatipestifer ATCC11845ΔtonB1ΔtonB2. Significantly promoted the organism's growth in TSB medium but significantly inhibited its hemin utilization. Collectively, these findings suggest that TbfA is not involved in hemin utilization by Riemerella anatipestifer.


Asunto(s)
Proteínas Bacterianas , Proteínas Portadoras , Hemina/metabolismo , Riemerella , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Proteínas Portadoras/genética , Proteínas Portadoras/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Técnicas de Silenciamiento del Gen , Hemina/genética , Plásmidos/genética , Riemerella/genética , Riemerella/metabolismo
9.
Redox Biol ; 8: 333-40, 2016 08.
Artículo en Inglés | MEDLINE | ID: mdl-26966892

RESUMEN

Radioadaptive response (RAR) is an important phenomenon induced by low dose radiation. However, the molecular mechanism of RAR is obscure. In this study, we focused on the possible role of heme oxygenase 1 (HO-1) in RAR. Consistent with previous studies, priming dose of X-ray radiation (1-10cGy) induced significant RAR in normal human skin fibroblasts (AG 1522 cells). Transcription and translation of HO-1 was up-regulated more than two fold by a priming dose of radiation (5cGy). Zinc protoporphyrin Ⅸ, a specific competitive inhibitor of HO-1, efficiently inhibited RAR whereas hemin, an inducer of HO-1, could mimic priming dose of X-rays to induce RAR. Knocking down of HO-1 by transfection of HO-1 siRNA significantly attenuated RAR. Furthermore, the expression of HO-1 gene was modulated by the nuclear factor (erythroid-derived 2)-like 2 (Nrf2), which translocated from cytoplasm to nucleus after priming dose radiation and enhance the antioxidant level of cells.


Asunto(s)
Antioxidantes/metabolismo , Fibroblastos/metabolismo , Hemo-Oxigenasa 1/genética , Factor 2 Relacionado con NF-E2/genética , Línea Celular , Nucléolo Celular/metabolismo , Nucléolo Celular/efectos de la radiación , Citoplasma/efectos de la radiación , Relación Dosis-Respuesta en la Radiación , Fibroblastos/efectos de la radiación , Regulación de la Expresión Génica/efectos de la radiación , Hemo-Oxigenasa 1/antagonistas & inhibidores , Hemina/genética , Hemina/metabolismo , Humanos , Factor 2 Relacionado con NF-E2/metabolismo , Protoporfirinas/genética , Protoporfirinas/metabolismo , ARN Interferente Pequeño/genética , Rayos X
10.
J Alzheimers Dis ; 51(1): 107-21, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-26836195

RESUMEN

Hemin is known to induce endocytosis of prion-protein (PrP(C)) from the neuronal plasma membrane, potentially limiting propagation of the disease causing PrP-scrapie (PrP(Sc)) isoform. Hemin is therefore an attractive disease-modifying option for sporadic Creutzfeldt-Jakob disease (sCJD), a human prion disorder with no effective treatment. The hemin-PrP(C) interaction is also of interest in cerebral-hemorrhage (CH), a condition where potentially toxic hemin molecules come in contact with neuronal PrP(C). Interestingly, PrP(C) is upregulated in penumbric neurons surrounding CH and is known to confer neuroprotection in a dose-dependent manner. The underlying mechanism, however, is not clear. Here, we report that hemin binds PrP(C) on diverse cell lines, resulting in its aggregation or degradation in a cell-type specific manner. Surprisingly, the hemin-PrP(C) interaction upregulates Hb synthesis in hematopoietic cells, a response reversed by deleting the hemin-binding octa-peptide repeat region of PrP(C). A similar response is noted in brain organotypic cultures where exposure to hemin induces significantly more α-globin in wild-type (PrP(+/+)) relative to PrP-knock-out (PrP(-/-)) samples. Furthermore, red blood cells and brain tissue from PrP(-/-) mice show significantly less α-globin relative to PrP(+/+) controls, indicating a positive effect of PrP(C) on Hb synthesis under physiological conditions as well. Surprisingly, levels of α-globin are significantly higher in sCJD brain tissue relative to controls, suggesting compensatory upregulation of Hb synthesis by surviving neurons or misregulation in diseased brains. These observations reveal a unique function of PrP(C) that is likely to impact the therapeutic management of CH and sCJD.


Asunto(s)
Síndrome de Creutzfeldt-Jakob/metabolismo , Síndrome de Creutzfeldt-Jakob/patología , Hemina/metabolismo , Hemoglobinas/metabolismo , Proteínas Priónicas/metabolismo , Regulación hacia Arriba/fisiología , Animales , Encéfalo/citología , Línea Celular Tumoral , Endocitosis/efectos de los fármacos , Ferritinas/metabolismo , Proteínas Fluorescentes Verdes/genética , Proteínas Fluorescentes Verdes/metabolismo , Hemina/genética , Hemina/farmacología , Humanos , Técnicas In Vitro , Leucemia Eritroblástica Aguda/patología , Ratones , Ratones Transgénicos , Neuroblastoma/patología , Neuroglía/metabolismo , Neuronas/metabolismo , Técnicas de Cultivo de Órganos , Proteínas Priónicas/genética , Transfección
11.
Biosens Bioelectron ; 70: 54-60, 2015 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-25794958

RESUMEN

A highly sensitive electrochemiluminescence (ECL) strategy was developed for the protein kinase A (PKA) activity and inhibition assay based on double-quenching of graphene quantum dots (GQDs) ECL by G-quadruplex-hemin DNAzyme and gold nanoparticles (AuNPs). In this strategy, the GQDs were modified onto the indium-tin oxide (ITO) electrode and further assembled with substrate peptide of target protein kinase through covalent coupling, which can exhibit high and stable ECL signal. The AuNPs, functionalized with the phosphorylated DNA and G-quadruplex-hemin DNAzyme via Au-S chemistry, were selected as quenching probes. In the presence of PKA, the peptide on the electrode was phosphorylated and the AuNPs functionalized with the phosphorylated DNA and G-quadruplex-hemin DNAzyme were subsequently integrated onto the phosphorylated peptide by Zr(4+). Owing to the reduction of coreactant H2O2 resulting from G-quadruplex-hemin DNAzyme catalytic reaction and the ECL energy transfer (ECL-RET) between AuNPs and GQDs, the ECL intensity of GQDs was significantly decreased. By taking advantage of the double-quenching effect, this assay can detect PKA with a linear range of 0.05 to 5 U mL(-1) and a detection limit of 0.04 U mL(-1). In addition, the PKA inhibition assay and interferences experiments of CK2 and T4 PNK have been studied respectively. This assay was also successfully applied to PKA assay in serum samples and cell lysates, indicating that the developed method have the potential applications in protein kinase-related biochemical fundamental research and clinical diagnosis.


Asunto(s)
G-Cuádruplex , Grafito/química , Mediciones Luminiscentes/instrumentación , Nanopartículas del Metal/química , Proteínas Quinasas/sangre , Puntos Cuánticos , Conductometría/instrumentación , ADN Catalítico/química , ADN Catalítico/genética , Activación Enzimática , Diseño de Equipo , Análisis de Falla de Equipo , Oro/química , Hemina/química , Hemina/genética , Humanos , Proteínas Quinasas/química , Proteínas Quinasas/genética , Reproducibilidad de los Resultados , Sensibilidad y Especificidad , Espectrometría de Fluorescencia/instrumentación
12.
Sensors (Basel) ; 15(2): 2629-43, 2015 Jan 26.
Artículo en Inglés | MEDLINE | ID: mdl-25629701

RESUMEN

In this study, we describe a novel universal and highly sensitive strategy for the electrochemiluminescent (ECL) detection of sequence specific DNA at the aM level based on Nt.BbvCI (a nicking endonuclease)-assisted target recycling amplification (TRA), rolling circle amplification (RCA) and hemin/G-quadruplex. The target DNAs can hybridize with self-assembled capture probes and assistant probes to form "Y" junction structures on the electrode surface, thus triggering the execution of a TRA reaction with the aid of Nt.BbvCI. Then, the RCA reaction and the addition of hemin result in the production of numerous hemin/G-quadruplex, which consume the dissolved oxygen in the detection buffer and result in a significant ECL quenching effect toward the O2/S2O8(2-) system. The proposed strategy combines the amplification ability of TRA, RCA and the inherent high sensitivity of the ECL technique, thus enabling low aM (3.8 aM) detection for sequence-specific DNA and a wide linear range from 10.0 aM to 1.0 pM. At the same time, this novel strategy shows high selectivity against single-base mismatch sequences, which makes our novel universal and highly sensitive method a powerful addition to specific DNA sequence detection.


Asunto(s)
Técnicas Biosensibles , ADN/aislamiento & purificación , Endonucleasas/genética , ADN/química , Replicación del ADN/genética , Técnicas Electroquímicas , Endonucleasas/química , G-Cuádruplex , Hemina/química , Hemina/genética
13.
Biosens Bioelectron ; 64: 572-8, 2015 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-25310491

RESUMEN

In this work, a new binding-induced and label-free colorimetric method for protein detection has been developed on the basis of an autonomous assembly of hemin/G-quadruplex DNAzyme amplification strategy. The system consists of two proximity probes carrying two aptamer sequences as recognition elements for target, and two hairpin structures include three-fourths and one-fourth of the G-quadruplex sequences in inactive configuration as functional elements. In the presence of target protein, two proximity probes bind to the protein simultaneously, forming a stable DNA-protein complex. Then the complex triggers an autonomous cross-opening of the two functional hairpin structures, leading to the formation of numerous hemin/G-quadruplex DNAzymes. The resulting DNAzymes catalyze the oxidation of colorless 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS(2-)) to the green-colored ABTS(•-) with the presence of H2O2, thus providing the amplified colorimetric detection of target. Using human α-thrombin as the protein target, this binding-induced DNAzyme amplification colorimetric method affords high sensitivity with a detection limit of 1.9 pM. Furthermore, this method might be further extended to sensitive detection of other proteins by simply replacing recognition elements of proximity probes.


Asunto(s)
Técnicas Biosensibles/instrumentación , Colorimetría/instrumentación , G-Cuádruplex , Hemina/genética , Técnicas de Amplificación de Ácido Nucleico/instrumentación , Mapeo de Interacción de Proteínas/instrumentación , Trombina/análisis , Sitios de Unión , Diseño de Equipo , Análisis de Falla de Equipo , Hemina/química , Unión Proteica , Coloración y Etiquetado , Trombina/química , Trombina/genética
14.
Biosens Bioelectron ; 63: 552-557, 2015 Jan 15.
Artículo en Inglés | MEDLINE | ID: mdl-25150781

RESUMEN

Platelet-derived growth factor-BB (PDGF-BB) is often overexpressed in human malignant tumors as an indicator for tumor angiogenesis. Here by the photoinduced electron transfer (PET) between DNA-Ag fluorescent nanoclusters (NCs) and G-quadruplex/hemin complexes, we present a sensitive label-free fluorescent sensor for PDGF-BB. In the presence of PDGF-BB, the specific conjugation with its aptamer induced the conformational change of the duplex-like DNA sequence, releasing the G-quadruplex sequence part. Then in the presence of hemin and K(+), the horseradish peroxidase mimicking DNAzyme (HRP-DNAzyme) was formed. With the electron transfer between the DNA-Ag NCs to the hemin Fe (III) center of HRP-DNAzyme, the PET occurred with a decrease in the fluorescence intensity of the DNA-Ag NCs. The detection performance such as selectivity, linear dynamic range, sensitivity, and the quenching capability of HRP-DNAzyme were estimated. The detection range for PDGF-BB is from 5×10(-13) to 1×10(-8) M and the detection limit is 1×10(-13) M. The experimental results confirmed that the novel fluorescent aptasensor possessed a good sensitivity and high selectivity for PDGF-BB. In addition, the developed probe is nontoxic, label-free only involving one-step hybridization without sophisticated fabrication process. Furthermore, based on this quenching mode occurred by PDGF-BB and hemin, using PDGF-BB and hemin as inputs and the fluorescence signal as an output, a logic gate has been fabricated.


Asunto(s)
Aptámeros de Nucleótidos/química , Técnicas Biosensibles/instrumentación , ADN Catalítico/química , Hemina/química , Proteínas Proto-Oncogénicas c-sis/análisis , Espectrometría de Fluorescencia/instrumentación , Aptámeros de Nucleótidos/genética , Becaplermina , Transporte de Electrón/efectos de la radiación , Diseño de Equipo , Análisis de Falla de Equipo , G-Cuádruplex , Hemina/genética , Luz , Nanopartículas del Metal/química , Proteínas Proto-Oncogénicas c-sis/química , Proteínas Proto-Oncogénicas c-sis/genética , Procesamiento de Señales Asistido por Computador/instrumentación , Plata/química , Coloración y Etiquetado
15.
Biosens Bioelectron ; 60: 118-23, 2014 Oct 15.
Artículo en Inglés | MEDLINE | ID: mdl-24787126

RESUMEN

In this work, an ultrasensitive electrochemical immunosensor for detecting the Pebrine disease related spore wall protein of Nosema bombycis (SWP N.b) was fabricated based on the amplification of hemin/G-quadruplex functionalized Pt@Pd nanowires (Pt@PdNWs). The synthesized Pt@PdNWs possessed large surface area, which could effectively improve the immobilization amount of hemin/G-quadruplex DNAzyme concatamers produced via hybridization chain reaction (HCR). In the presence of SWP N.b, the hemin/G-quadruplex labeled Pt@PdNWs bioconjugations was captured on electrode surface and thus obtained electrochemical signal. After the addition of NADH into the electrolytic cell, hemin/G-quadruplex firstly acted as an NADH oxidase to locally produce H2O2 in the presence of dissolved O2. Then, the generated H2O2 would be quickly reduced via hemin/G-quadruplex as a horseradish peroxidase mimicking (HRP-mimicking) DNAzyme, which finally promoted the self-redox reaction of hemin/G-quadruplex and a greatly enhanced electrochemical signal was obtained. Furthermore, Pt@PdNWs with excellent electrocatalytic performance could also amplify electrochemical signal. With these amplification factors, the electrochemical immunosensor exhibited a wide linear range from 0.001 ng mL(-1) to 100 ng mL(-1) with a detection limit (LOD) of 0.24 pg mL(-1), providing a new promise for the diagnosis of Pebrine disease.


Asunto(s)
Conductometría/instrumentación , ADN Catalítico/genética , Proteínas Fúngicas/análisis , G-Cuádruplex , Hemina/genética , Inmunoensayo/instrumentación , Nosema/metabolismo , Técnicas Biosensibles/instrumentación , ADN Concatenado/genética , Diseño de Equipo , Análisis de Falla de Equipo , Proteínas Fúngicas/genética , Nanocables/química , Nanocables/ultraestructura , Nosema/genética , Nosema/aislamiento & purificación , Técnicas de Amplificación de Ácido Nucleico/instrumentación , Análisis de Secuencia por Matrices de Oligonucleótidos/instrumentación , Paladio/química , Platino (Metal)/química , Reproducibilidad de los Resultados , Sensibilidad y Especificidad , Esporas Fúngicas/genética , Esporas Fúngicas/aislamiento & purificación , Esporas Fúngicas/metabolismo
16.
Mol Biol Rep ; 41(6): 4109-21, 2014 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-24562628

RESUMEN

Heme oxygenase1 (HO1) is involved in protecting plants from environmental stimuli. In this study, a sunflower (Helianthus annuus L.) HO1 gene (HaHO1) was cloned and sequenced. It was confirmed that HaHO1 encodes a precursor protein of 32.93 kDa with an N-terminal plastid transit peptide which was validated by subcellular localization. The amino acid sequence of HaHO1 shared high homology with other plant HO1s. The predicted three-dimensional structure showed a high degree of structural conservation as compared to the known HO1 crystal structures. Phylogenetic analysis revealed that HaHO1 clearly grouped with the plant HO1-like sequences. Moreover, the purified recombinant mature HaHO1 expressed in Escherichia coli exhibits HO activity. Thus, it was concluded that HaHO1 encodes a functional HO1 in sunflower. Additionally, HaHO1 gene was ubiquitously expressed in all tested tissues, and induced differentially during different growth stages after germination, and could be differentially induced by several stresses and hemin treatment. For example, a pretreatment with a low concentration of NaCl (25 mM) could lead to the induction of HaHO1 gene expression and thereafter a salinity acclamatory response. Above cytoprotective effect could be impaired by the potent HO1 inhibitor zinc protoporphyrin IX (ZnPPIX), which was further rescued by the addition of 50% carbon monoxide aqueous solution (in particular) or bilirubin, two catalytic by-products of HO1, respectively. Similarly, a HO1 inducer, hemin, could mimic the salinity acclamatory response. Together, these findings strongly suggested that the up-regulation of HaHO1 might be required for the observed salinity acclimation in sunflower plants.


Asunto(s)
Helianthus/enzimología , Hemo-Oxigenasa 1/química , Hemo-Oxigenasa 1/genética , Filogenia , Aclimatación , Clonación Molecular , Cristalografía por Rayos X , Regulación de la Expresión Génica de las Plantas , Hemo-Oxigenasa 1/biosíntesis , Hemina/química , Hemina/genética , Raíces de Plantas/química , Raíces de Plantas/metabolismo , Salinidad , Cloruro de Sodio/metabolismo
17.
Biosens Bioelectron ; 55: 266-71, 2014 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-24393655

RESUMEN

Based on nicking endonuclease (NEase)-assisted target recycling and rolling circle amplification (RCA) for in situ generation of numerous G-quadruplex/hemin complexes, we developed a new, dual amplified and ultrasensitive electrochemical biosensor for mutant human p53 gene. The target mutant DNA hybridizes with the loop portion of a dithiol-modified hairpin probe (HP) self-assembled on a gold sensing electrode and forms nicking site for the NEase, which cleaves the HP and releases the target DNA. The released target DNA again hybridizes with the intact HP and initiates the DNA recycling process with the assistance of the NEase, leading to the cleavage of a large number of the HPs and the generation of numerous primers for RCA. With rationally designed, G-quadruplex complementary sequence-encoded RCA circular template, subsequent RCA results in the formation of long DNA sequences with massive tandem-repeat G-quadruplex sequences, which further associate with hemin and generate significantly amplified current response for highly sensitive DNA detection down to 0.25 fM. The developed method also exhibits high specificity for the target DNA against single-base mismatched sequence. With the ultrahigh sensitivity feature induced by the dual signal amplification, the proposed method can thus offer new opportunities for the detection of trace amounts of DNA.


Asunto(s)
Conductometría/instrumentación , Análisis Mutacional de ADN/instrumentación , ADN/genética , Marcación de Gen/instrumentación , Genes p53/genética , Marcadores Genéticos/genética , Técnicas de Amplificación de Ácido Nucleico/instrumentación , Secuencia de Bases , Técnicas Biosensibles/instrumentación , ADN/análisis , Diseño de Equipo , Análisis de Falla de Equipo , Hemina/genética , Humanos , Datos de Secuencia Molecular , Reproducibilidad de los Resultados , Sensibilidad y Especificidad
18.
J Biol Chem ; 289(3): 1441-56, 2014 Jan 17.
Artículo en Inglés | MEDLINE | ID: mdl-24280214

RESUMEN

Blood-feeding parasites have developed biochemical mechanisms to control heme intake and detoxification. Here we show that a major antigen secreted by Fasciola hepatica, previously reported as MF6p, of unknown function (gb|CCA61804.1), and as FhHDM-1, considered to be a helminth defense molecule belonging to the family of cathelicidin-like proteins (gb|ADZ24001.1), is in fact a heme-binding protein. The heme-binding nature of the MF6p/FhHDM-1 protein was revealed in two independent experiments: (i) immunopurification of the secreted protein·heme complexes with mAb MF6 and subsequent analysis by C8 reversed-phase HPLC and MS/MS spectrometry and (ii) analysis of the binding ability of the synthetic protein to hemin in vitro. By immunohistochemistry analysis, we have observed that MF6p/FhHDM-1 is produced by parenchymal cells and transported to other tissues (e.g. vitellaria and testis). Interestingly, MF6p/FhHDM-1 is absent both in the intestinal cells and in the lumen of cecum, but it can be released through the tegumental surface to the external medium, where it binds to free heme molecules regurgitated by the parasite after hemoglobin digestion. Proteins that are close analogs of the Fasciola MF6p/FhHDM-1 are present in other trematodes, including Clonorchis, Opistorchis, Paragonimus, Schistosoma, and Dicrocoelium. Using UV-visible spectroscopy and immunoprecipitation techniques, we observed that synthetic MF6p/FhHDM-1 binds to hemin with 1:1 stoichiometry and an apparent Kd of 1.14 × 10(-6) M(-1). We also demonstrated that formation of synthetic MF6p/FhHDM-1·hemin complexes inhibited hemin degradation by hydrogen peroxide and hemin peroxidase-like activity in vitro. Our results suggest that MF6p/FhHDM-1 may be involved in heme homeostasis in trematodes.


Asunto(s)
Antígenos Helmínticos/metabolismo , Proteínas Portadoras/metabolismo , Fasciola hepatica/metabolismo , Proteínas del Helminto/metabolismo , Hemoproteínas/metabolismo , Secuencia de Aminoácidos , Animales , Anticuerpos Antihelmínticos/química , Anticuerpos Antihelmínticos/inmunología , Anticuerpos Monoclonales de Origen Murino/química , Anticuerpos Monoclonales de Origen Murino/inmunología , Antígenos Helmínticos/genética , Antígenos Helmínticos/inmunología , Proteínas Portadoras/genética , Proteínas Portadoras/inmunología , Bovinos , Fasciola hepatica/genética , Fasciola hepatica/inmunología , Proteínas del Helminto/genética , Proteínas del Helminto/inmunología , Proteínas de Unión al Hemo , Hemoproteínas/genética , Hemoproteínas/inmunología , Hemina/química , Hemina/genética , Hemina/metabolismo , Hemoglobinas/genética , Hemoglobinas/inmunología , Hemoglobinas/metabolismo , Datos de Secuencia Molecular
19.
PLoS One ; 8(12): e83246, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24349474

RESUMEN

Leptospirosis is one of the most widespread zoonotic diseases in the world. It is caused by the pathogen Leptospira that results in multiple-organ failure, in particular of the kidney. Outer membrane lipoprotein is the suspected virulence factor of Leptospira. In Leptospira spp LipL41 is one major lipoprotein and is highly conserved. Previous study suggests that LipL41 bears hemin-binding ability and might play a possible role in iron regulation and storage. However, the characterization of hemin-binding ability of LipL41 is still unclear. Here the hemin-binding ability of LipL41 was examined, yielding a K d = 0.59 ± 0.14 µM. Two possible heme regulatory motifs (HRMs), C[P/S], were found in LipL41 at (140)Cys-Ser and (220)Cys-Pro. The mutation study indicates that Cys140 and Cys220 might be cooperatively involved in hemin binding. A supramolecular assembly of LipL41 was determined by transmission electron microscopy. The LipL41 oligomer consists of 36 molecules and folds as a double-layered particle. At the C-terminus of LipL41, there are two tetratricopeptide repeats (TPRs), which might be involved in the protein-protein interaction of the supramolecular assembly.


Asunto(s)
Proteínas Bacterianas/metabolismo , Proteínas Portadoras/metabolismo , Hemoproteínas/metabolismo , Hemina/metabolismo , Leptospira/metabolismo , Lipoproteínas/metabolismo , Multimerización de Proteína/fisiología , Proteínas Bacterianas/genética , Proteínas Portadoras/genética , Proteínas de Unión al Hemo , Hemoproteínas/genética , Hemina/genética , Leptospira/genética , Lipoproteínas/genética
20.
Antimicrob Agents Chemother ; 56(12): 6166-74, 2012 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-22985883

RESUMEN

In a previous study (L. G. Garcia et al., Antimicrob. Agents Chemother. 56:3700-3711, 2012), we evaluated the intracellular fate of menD and hemB mutants (corresponding to menadione- and hemin-dependent small-colony variants, respectively) of the parental COL methicillin-resistant Staphylococcus aureus strain and the pharmacodynamic profile of the intracellular activity of a series of antibiotics in human THP-1 monocytes. We have now examined the phagocytosis and intracellular persistence of the same strains in THP-1 cells activated by phorbol 12-myristate 13-acetate (PMA) and measured the intracellular activity of gentamicin, moxifloxacin, and oritavancin in these cells. Postphagocytosis intracellular counts and intracellular survival were lower in PMA-activated cells, probably due to their higher killing capacities. Gentamicin and moxifloxacin showed a 5- to 7-fold higher potency (lower static concentrations) against the parental strain, its hemB mutant, and the genetically complemented strain in PMA-activated cells and against the menD strain in both activated and nonactivated cells. This effect was inhibited when cells were incubated with N-acetylcysteine (a scavenger of oxidant species). In parallel, we observed that the MICs of these drugs were markedly reduced if bacteria had been preexposed to H(2)O(2). In contrast, the intracellular potency of oritavancin was not different in activated and nonactivated cells and was not decreased by the addition of N-acetylcysteine, regardless of the phenotype of the strains. The oritavancin MIC was also unaffected by preincubation of the bacteria with H(2)O(2). Thus, activation of THP-1 cells by PMA may increase the intracellular potency of certain antibiotics (probably due to synergy with reactive oxygen species), but this effect cannot be generalized to all antibiotics.


Asunto(s)
Antibacterianos/farmacología , Activadores de Enzimas/farmacología , Hemina/genética , Mutación/fisiología , Proteína Quinasa C/metabolismo , Staphylococcus aureus/efectos de los fármacos , Acetato de Tetradecanoilforbol/farmacología , Vitamina K 3/metabolismo , Acetilcisteína/farmacología , Diferenciación Celular/efectos de los fármacos , Línea Celular , Farmacorresistencia Bacteriana , Gentamicinas/uso terapéutico , Humanos , Peróxido de Hidrógeno/farmacología , Pruebas de Sensibilidad Microbiana , Monocitos/microbiología , Mutación/genética , Fagocitosis/efectos de los fármacos , Staphylococcus aureus/genética
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