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1.
Biol Lett ; 20(8): 20240157, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-39140204

RESUMEN

Species delimitation using mitochondrial DNA (mtDNA) remains an important and accessible approach for discovering and delimiting species. However, delimiting species with a single locus (e.g. DNA barcoding) is biased towards overestimating species diversity. The highly diverse gecko genus Cyrtodactylus is one such group where delimitation using mtDNA remains the paradigm. In this study, we use genomic data to test putative species boundaries established using mtDNA within three recognized species of Cyrtodactylus on the island of Borneo. We predict that multi-locus genomic data will estimate fewer species than mtDNA, which could have important ramifications for the species diversity within the genus. We aim to (i) investigate the correspondence between species delimitations using mtDNA and genomic data, (ii) infer species trees for each target species, and (iii) quantify gene flow and identify migration patterns to assess population connectivity. We find that species diversity is overestimated and that species boundaries differ between mtDNA and nuclear data. This underscores the value of using genomic data to reassess mtDNA-based species delimitations for taxa lacking clear species boundaries. We expect the number of recognized species within Cyrtodactylus to continue increasing, but, when possible, genomic data should be included to inform more accurate species boundaries.


Asunto(s)
ADN Mitocondrial , Lagartos , Animales , Lagartos/genética , Lagartos/clasificación , ADN Mitocondrial/genética , Borneo , Filogenia , Flujo Génico , Especificidad de la Especie , Especiación Genética , Variación Genética
2.
Int J Mol Sci ; 25(15)2024 Aug 02.
Artículo en Inglés | MEDLINE | ID: mdl-39126033

RESUMEN

Anguimorpha, within the order Squamata, represents a group with distinct morphological and behavioral characteristics in different ecological niches among lizards. Within Anguimorpha, there is a group characterized by limb loss, occupying lower ecological niches, concentrated within the subfamily Anguinae. Lizards with limbs and those without exhibit distinct locomotor abilities when adapting to their habitats, which in turn necessitate varying degrees of energy expenditure. Mitochondria, known as the metabolic powerhouses of cells, play a crucial role in providing approximately 95% of an organism's energy. Functionally, mitogenomes (mitochondrial genomes) can serve as a valuable tool for investigating potential adaptive evolutionary selection behind limb loss in reptiles. Due to the variation of mitogenome structures among each species, as well as its simple genetic structure, maternal inheritance, and high evolutionary rate, the mitogenome is increasingly utilized to reconstruct phylogenetic relationships of squamate animals. In this study, we sequenced the mitogenomes of two species within Anguimorpha as well as the mitogenomes of two species in Gekkota and four species in Scincoidea. We compared these data with the mitogenome content and evolutionary history of related species. Within Anguimorpha, between the mitogenomes of limbless and limbed lizards, a branch-site model analysis supported the presence of 10 positively selected sites: Cytb protein (at sites 183 and 187), ND2 protein (at sites 90, 155, and 198), ND3 protein (at site 21), ND5 protein (at sites 12 and 267), and ND6 protein (at sites 72 and 119). These findings suggested that positive selection of mitogenome in limbless lizards may be associated with the energy requirements for their locomotion. Additionally, we acquired data from 205 mitogenomes from the NCBI database. Bayesian inference (BI) and Maximum Likelihood (ML) trees were constructed using the 13 mitochondrial protein-coding genes (PCGs) and two rRNAs (12S rRNA and 16S rRNA) from 213 mitogenomes. Our phylogenetic tree and the divergence time estimates for Squamata based on mitogenome data are consistent with results from previous studies. Gekkota was placed at the root of Squamata in both BI and ML trees. However, within the Toxicofera clade, due to long-branch attraction, Anguimorpha and (Pleurodonta + (Serpentes + Acrodonta)) were closely related groupings, which might indicate errors and also demonstrate that mitogenome-based phylogenetic trees may not effectively resolve long-branch attraction issues. Additionally, we reviewed the origin and diversification of Squamata throughout the Mesozoic era, suggesting that Squamata originated in the Late Triassic (206.05 Mya), with the diversification of various superfamilies occurring during the Cretaceous period. Future improvements in constructing squamate phylogenetic relationships using mitogenomes will rely on identifying snake and acrodont species with slower evolutionary rates, ensuring comprehensive taxonomic coverage of squamate diversity, and increasing the number of genes analyzed.


Asunto(s)
Genoma Mitocondrial , Lagartos , Filogenia , Selección Genética , Animales , Lagartos/genética , Lagartos/clasificación , Genoma Mitocondrial/genética , Evolución Molecular
3.
An Acad Bras Cienc ; 96(3): e20220650, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38922253

RESUMEN

The study aimed to characterize the digestive tract of Uranoscodon superciliosus and its associations to the diet and foraging behavior already described for the species. Five lizards were captured in forest areas near the city of Manaus, Amazonas, Brazil. Tongue, oesophagus, stomach, small and large intestines fragments were collected, fixed, and processed for light microscopy. Hyaline cartilage was present in the center of the tongue, and the papillae from the apex and glands from the radix showed positive reaction to Alcian blue. The oesophagus presented a folded mucosa, covered by an epithelium with mucous and goblet cells positive to PAS and Alcian blue. There was presence of gastric glands in the cardic and fundic stomach regions, plus all the regions reacted positively to PAS. Fold and villi variations in both small and large intestine were noted, as well as the number and arrangement of goblet cells. Mucous and goblet cells from the small intestine were positively stained in PAS, while only the goblet cells were Alcian blue positive. These findings indicate that the Amazonian Diving Lizard's digestive tract organs, mainly the tongue and stomach, present morphologies associated to ambush-type foraging and a specific diet largely based on small invertebrates.


Asunto(s)
Conducta Alimentaria , Tracto Gastrointestinal , Lagartos , Animales , Lagartos/anatomía & histología , Lagartos/clasificación , Conducta Alimentaria/fisiología , Tracto Gastrointestinal/anatomía & histología , Brasil , Dieta , Masculino
4.
An Acad Bras Cienc ; 96(3): e20230728, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38922256

RESUMEN

The ecology of movement is an expanding area, marked by the diversity of analytical methods and protocols, which enables this integrative reading. We investigated movement ecology aspects of Coleodactylus meridionalis in southern Bahia, northeastern Brazil, using fluorescent powder with mineral oil to track individuals. We monitored 69 individuals of C. meridionalis that walked an average distance of 148 cm in 2h. We identified this movement as foraging due to the orientation of the step sequence and microenvironments used. We find no significant differences between walking distance and weight. However, we found a decrease in activity over the follow-up period. Most of the lizard's movements were directed north, while south, east, and west were followed equally. The individuals stayed predominantly on the ground (leaf litter), but it was possible to observe the use of other surfaces, such as trunks and burrows on the ground. Therefore, we studied the movement in three dimensions (ground height, distance traveled, and orientation of steps). We observed the lizard's foraging, one of the most common and least investigated movements in small lizards like C. meridionalis. This involves not only the species' activity schedule but other intrinsic and extrinsic factors that shape the movement decisions of individuals.


Asunto(s)
Lagartos , Animales , Lagartos/fisiología , Lagartos/clasificación , Brasil , Bosques , Polvos , Masculino
5.
Mol Phylogenet Evol ; 197: 108091, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-38719080

RESUMEN

Cryptic diversity poses a great obstacle in our attempts to assess the current biodiversity crisis and may hamper conservation efforts. The gekkonid genus Mediodactylus, a well-known case of hidden species and genetic diversity, has been taxonomically reclassified several times during the last decade. Focusing on the Mediterranean populations, a recent study within the M. kotschyi species complex using classic mtDNA/nuDNA markers suggested the existence of five distinct species, some being endemic and some possibly threatened, yet their relationships have not been fully resolved. Here, we generated genome-wide SNPs (using ddRADseq) and applied molecular species delimitation approaches and population genomic analyses to further disentangle these relationships. Τhe most extensive nuclear dataset, so far, encompassing 2,360 loci and âˆ¼ 699,000 bp from across the genome of Mediodactylus gecko, enabled us to resolve previously obscure phylogenetic relationships among the five, recently elevated, Mediodactylus species and to support the hypothesis that the taxon includes several new, undescribed species. Population genomic analyses within each of the proposed species showed strong genetic structure and high levels of genetic differentiation among populations.


Asunto(s)
Lagartos , Filogenia , Filogeografía , Animales , Región Mediterránea , Lagartos/genética , Lagartos/clasificación , Polimorfismo de Nucleótido Simple , Variación Genética , Genética de Población , ADN Mitocondrial/genética , Análisis de Secuencia de ADN
6.
Mol Phylogenet Evol ; 197: 108090, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-38723791

RESUMEN

Co-distributed taxa can respond both similarly or differently to the same climatic and geological events, resulting in a range of phylogeographic patterns across the region. Using a nested approach on a taxonomically diverse yet morphologically conservative group of agamid lizards, we first aimed to evaluate more precisely the extent of phylogeographic structuring within the genus. Then, focusing on four lineages within the more widespread species, we assessed the impact of biogeographic barriers on phylogeographic structuring and demographic history of species, comparing to patterns previously observed in co-distributed taxa. These species occur in the Australian Monsoonal Tropics, a vast tropical savanna system with high richness and endemism associated with environmental heterogeneity and past climate fluctuations. The employment of genomic data helped to determine the relationships between specific taxa that were previously difficult to place. We found a local influence of biogeographic and climatic breaks on population dynamics, analogous to other species. We detected high levels of population structure in the West Kimberley and Arnhem Plateau, which are already known for high endemism. However, we also highlighted unique lineages in areas that have been overlooked until recently, in the South Kimberley and West Top End. Climatic and geographical features in the Arnhem Plateau act as a soft barrier between populations in the east and west regions of the Top End. These observations reflect patterns observed for other vertebrates across this rich biome, indicating how climatic variation, species' ecology, and landscape features interact to shape regional diversity and endemism.


Asunto(s)
Especiación Genética , Lagartos , Filogeografía , Animales , Lagartos/genética , Lagartos/clasificación , Australia , Filogenia , ADN Mitocondrial/genética
7.
Mol Phylogenet Evol ; 197: 108104, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-38750676

RESUMEN

Barking geckos (genus Ptenopus) are terrestrial, burrowing lizards endemic to southern Africa, currently with three recognised species. Two species are range-restricted (P. kochi and P. carpi) and display clear differences in substrate preference (soft sand vs. hard gravel). The third and most widespread species, P. garrulus, occurs on a variety of substrates of differing hardness, across potential geographic barriers, and over a steep climatic gradient. Variations in morphology and advertisement calls indicates that P. garrulus may be a species complex. Two subspecies of P. garrulus are currently recognised: P. g. maculatus and P. g. garrulus. To investigate species boundaries, we produced the first comprehensive phylogeny for the genus. We used a novel application of multiple regression on matrices models to assess multiple environmental drivers of diversification, as contrasted to isolation by distance. We show that P. kochi, P. carpi, and P. g. garrulus are valid species, but that P. g. maculatus is a paraphyletic complex of five previously unrecognised taxa. Specialisation onto different substrates was likely the main driver of divergence, with parapatric occurrence of two to four clades occurring at each of the three substrate transition zones identified a priori. The region encompasses diverse bioclimatic regions and potential geographic barriers, and these likely played a role in some divergence events.


Asunto(s)
Lagartos , Filogenia , Animales , Lagartos/genética , Lagartos/clasificación , ADN Mitocondrial/genética , Especiación Genética , Análisis de Secuencia de ADN , África Austral , Teorema de Bayes , Modelos Genéticos
8.
An Acad Bras Cienc ; 96(2): e20230240, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38747786

RESUMEN

There are few studies related to the biological and ecological aspects of the glass snake, a limbless lizard and with a wide geographic distribution. The aim of this study was to analyze the locomotion mode of specimens of Ophiodes cf. fragilis in different substrates and to investigate the morphological adaptations associated with this type of behavior. We observed that the analyzed specimens presented slide-push locomotion modes and lateral undulation in different substrates, using their hind limbs to aid locomotion in three of the four substrates analyzed. The bones of the hind limbs (proximal - femur - and distal - tibia and fibula) were present and highly reduced and the femur is connected to a thin pelvic girdle. Our data support that hind limbs observed in species of this genus are reduced rather than vestigial. The costocutaneous musculature was macroscopically absent. This is the first study of locomotor behavior and morphology associated with locomotion in Ophiodes, providing important information for studies on morphological evolution in the genus.


Asunto(s)
Adaptación Fisiológica , Lagartos , Locomoción , Animales , Lagartos/anatomía & histología , Lagartos/fisiología , Lagartos/clasificación , Locomoción/fisiología , Adaptación Fisiológica/fisiología , Miembro Posterior/anatomía & histología , Miembro Posterior/fisiología
9.
PeerJ ; 12: e17277, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38708352

RESUMEN

Background: Squamata (lizards, snakes, and amphisbaenians) is a Triassic lineage with an extensive and complex biogeographic history, yet no large-scale study has reconstructed the ancestral range of early squamate lineages. The fossil record indicates a broadly Pangaean distribution by the end- Cretaceous, though many lineages (e.g., Paramacellodidae, Mosasauria, Polyglyphanodontia) subsequently went extinct. Thus, the origin and occupancy of extant radiations is unclear and may have been localized within Pangaea to specific plates, with potential regionalization to distinct Laurasian and Gondwanan landmasses during the Mesozoic in some groups. Methods: We used recent tectonic models to code extant and fossil squamate distributions occurring on nine discrete plates for 9,755 species, with Jurassic and Cretaceous fossil constraints from three extinct lineages. We modeled ancestral ranges for crown Squamata from an extant-only molecular phylogeny using a suite of biogeographic models accommodating different evolutionary processes and fossil-based node constraints from known Jurassic and Cretaceous localities. We hypothesized that the best-fit models would not support a full Pangaean distribution (i.e., including all areas) for the origin of crown Squamata, but would instead show regionalization to specific areas within the fragmenting supercontinent, likely in the Northern Hemisphere where most early squamate fossils have been found. Results: Incorporating fossil data reconstructs a localized origin within Pangaea, with early regionalization of extant lineages to Eurasia and Laurasia, while Gondwanan regionalization did not occur until the middle Cretaceous for Alethinophidia, Scolecophidia, and some crown Gekkotan lineages. While the Mesozoic history of extant squamate biogeography can be summarized as a Eurasian origin with dispersal out of Laurasia into Gondwana, their Cenozoic history is complex with multiple events (including secondary and tertiary recolonizations) in several directions. As noted by previous authors, squamates have likely utilized over-land range expansion, land-bridge colonization, and trans-oceanic dispersal. Tropical Gondwana and Eurasia hold more ancient lineages than the Holarctic (Rhineuridae being a major exception), and some asymmetries in colonization (e.g., to North America from Eurasia during the Cenozoic through Beringia) deserve additional study. Future studies that incorporate fossil branches, rather than as node constraints, into the reconstruction can be used to explore this history further.


Asunto(s)
Fósiles , Animales , Filogenia , Evolución Biológica , Serpientes/anatomía & histología , Serpientes/clasificación , Serpientes/genética , Lagartos/anatomía & histología , Lagartos/genética , Lagartos/clasificación , Filogeografía , Europa (Continente) , Asia
10.
Mol Ecol ; 33(9): e17338, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38572696

RESUMEN

The maintenance of polymorphisms often depends on multiple selective forces, but less is known on the role of stochastic or historical processes in maintaining variation. The common wall lizard (Podarcis muralis) is a colour polymorphic species in which local colour morph frequencies are thought to be modulated by natural and sexual selection. Here, we used genome-wide single-nucleotide polymorphism data to investigate the relationships between morph composition and population biogeography at a regional scale, by comparing morph composition with patterns of genetic variation of 54 populations sampled across the Pyrenees. We found that genetic divergence was explained by geographic distance but not by environmental features. Differences in morph composition were associated with genetic and environmental differentiation, as well as differences in sex ratio. Thus, variation in colour morph frequencies could have arisen via historical events and/or differences in the permeability to gene flow, possibly shaped by the complex topography and environment. In agreement with this hypothesis, colour morph diversity was positively correlated with genetic diversity and rates of gene flow and inversely correlated with the likelihood of the occurrence of bottlenecks. Concurrently, we did not find conclusive evidence for selection in the two colour loci. As an illustration of these effects, we observed that populations with higher proportions of the rarer yellow and yellow-orange morphs had higher genetic diversity. Our results suggest that processes involving a decay in overall genetic diversity, such as reduced gene flow and/or bottleneck events have an important role in shaping population-specific morph composition via non-selective processes.


Asunto(s)
Flujo Génico , Genética de Población , Lagartos , Polimorfismo de Nucleótido Simple , Lagartos/genética , Lagartos/anatomía & histología , Lagartos/clasificación , Animales , Pigmentación/genética , Selección Genética , Variación Genética , Filogeografía , Masculino
11.
Evolution ; 78(5): 1018-1019, 2024 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-38465471

RESUMEN

Recent perspectives on speciation genomics emphasize the pivotal role of hybridization in driving rapid radiations. The Liolaemus lizard genus displays impressive species richness with around 290 species widely distributed across southern South America. Sánchez et al. conducted a comprehensive study on the 5-million-year-old Liolaemus kingii group, which includes 14 species. The research provides new key insights to enhance our understanding of this rapid radiation, including its diversification in space and time and the consequences of hybridization in its morphological evolution and taxonomy.


Asunto(s)
Especiación Genética , Hibridación Genética , Lagartos , Animales , Lagartos/genética , Lagartos/clasificación , América del Sur
12.
Science ; 383(6685): 918-923, 2024 Feb 23.
Artículo en Inglés | MEDLINE | ID: mdl-38386744

RESUMEN

Snakes and lizards (Squamata) represent a third of terrestrial vertebrates and exhibit spectacular innovations in locomotion, feeding, and sensory processing. However, the evolutionary drivers of this radiation remain poorly known. We infer potential causes and ultimate consequences of squamate macroevolution by combining individual-based natural history observations (>60,000 animals) with a comprehensive time-calibrated phylogeny that we anchored with genomic data (5400 loci) from 1018 species. Due to shifts in the dynamics of speciation and phenotypic evolution, snakes have transformed the trophic structure of animal communities through the recurrent origin and diversification of specialized predatory strategies. Squamate biodiversity reflects a legacy of singular events that occurred during the early history of snakes and reveals the impact of historical contingency on vertebrate biodiversity.


Asunto(s)
Evolución Biológica , Serpientes , Animales , Biodiversidad , Genómica , Lagartos/clasificación , Locomoción , Filogenia , Serpientes/clasificación , Serpientes/genética
13.
Syst Biol ; 73(2): 323-342, 2024 Jul 27.
Artículo en Inglés | MEDLINE | ID: mdl-38190300

RESUMEN

The opposing forces of gene flow and isolation are two major processes shaping genetic diversity. Understanding how these vary across space and time is necessary to identify the environmental features that promote diversification. The detection of considerable geographic structure in taxa from the arid Nearctic has prompted research into the drivers of isolation in the region. Several geographic features have been proposed as barriers to gene flow, including the Colorado River, Western Continental Divide (WCD), and a hypothetical Mid-Peninsular Seaway in Baja California. However, recent studies suggest that the role of barriers in genetic differentiation may have been overestimated when compared to other mechanisms of divergence. In this study, we infer historical and spatial patterns of connectivity and isolation in Desert Spiny Lizards (Sceloporus magister) and Baja Spiny Lizards (Sceloporus zosteromus), which together form a species complex composed of parapatric lineages with wide distributions in arid western North America. Our analyses incorporate mitochondrial sequences, genomic-scale data, and past and present climatic data to evaluate the nature and strength of barriers to gene flow in the region. Our approach relies on estimates of migration under the multispecies coalescent to understand the history of lineage divergence in the face of gene flow. Results show that the S. magister complex is geographically structured, but we also detect instances of gene flow. The WCD is a strong barrier to gene flow, while the Colorado River is more permeable. Analyses yield conflicting results for the catalyst of differentiation of peninsular lineages in S. zosteromus. Our study shows how large-scale genomic data for thoroughly sampled species can shed new light on biogeography. Furthermore, our approach highlights the need for the combined analysis of multiple sources of evidence to adequately characterize the drivers of divergence.


Asunto(s)
Flujo Génico , Lagartos , Animales , Lagartos/genética , Lagartos/clasificación , Clima Desértico , Filogenia , México , Genómica
14.
J Morphol ; 284(9): e21629, 2023 09.
Artículo en Inglés | MEDLINE | ID: mdl-37585222

RESUMEN

Few studies considered the anatomy of the nerve plexuses and musculature associated with them in ectothermic sauropsids. Based on differentiated Sudan Black B staining and conventional dissections, we describe the neuroanatomy of the brachial plexus, its main associated nerves, and muscles. For that, representatives of the genera Diplolaemus, Liolaemus, Phymaturus, and Tropidurus were selected. Based on this, potentially useful characters for phylogenetic analysis were described. Our results show that the brachial plexus can be formed by four, five, or six nerve branches. The brachial flexor trunk, circumflex, interosseous, median, radial, subscapulocoracoid, supracoracoid, and ulnar nerves were identified. Regarding the muscles innervated by the main nerves, the following muscles were identified: biceps brachii, deltoideus scapularis, latissimus dorsi, levator scapulae, pectoralis, serratus thoracis, trapezius, triceps longus caudalis, and triceps longus lateralis. Phylogenetic analyzes revealed 31 potential synapomorphies. There exists evidence that neuroanatomy studies in a phylogenetic context could provide useful information helping to elucidate the relationships between taxonomic groups.


Asunto(s)
Plexo Braquial , Lagartos , Filogenia , Plexo Braquial/anatomía & histología , Lagartos/anatomía & histología , Lagartos/clasificación , Músculos/inervación , América del Sur , Especificidad de la Especie , Animales
15.
J Therm Biol ; 114: 103579, 2023 May.
Artículo en Inglés | MEDLINE | ID: mdl-37344018

RESUMEN

Alternative phenotypes allow individuals to pursue different adaptive pathways in response to the same selective challenge. Colour polymorphic species with geographically varying morph frequencies may reflect multiple adaptations to spatial variables such as temperature and climate. We examined whether thermal biology differed between colour morphs of an Australian lizard, the delicate skink, Lampropholis delicata. The delicate skink has two colour pattern morphs, with frequencies varying across latitude and sex: plain (darker, more common at temperate latitudes, more common in males) or striped (lighter, more common at lower latitudes, more common in females). We tested heating and cooling rate, sprint speed, thermal preference, field body temperature and metabolic rate in both morphs and sexes to determine any link between colour and morph frequency distribution. Plain individuals heated more quickly, but other thermal traits showed little variation among morphs. Lampropholis delicata colour influences rates of heat exchange, but the relationship does not appear to be adaptive, suggesting that behavioural thermoregulation homogenises body temperature in the field. While we find no substantial evidence of thermal differences between the two colour morphs, morph-specific behaviour may buffer against differences in heat exchange. Latitudinal variation in species colour may be driven by selection pressures other than temperature.


Asunto(s)
Lagartos , Lagartos/anatomía & histología , Lagartos/clasificación , Lagartos/genética , Lagartos/fisiología , Animales , Pigmentación , Polimorfismo Genético , Masculino , Femenino , Calefacción , Pigmentación de la Piel , Fenómenos Fisiológicos de la Piel
16.
Zootaxa ; 5254(3): 398-412, 2023 Mar 13.
Artículo en Inglés | MEDLINE | ID: mdl-37044714

RESUMEN

We describe a new species of naked-toed gecko of the genus Cyrtopodion Fitzinger, 1843, from the Dahod and Panchmahal districts of Gujarat state, India. The new species is diagnosable by the following suite of characters: a medium-sized Cyrtopodion (adult, snout to vent length up to 50 mm); dorsal scalation on trunk granular, intermixed with enlarged, regularly arranged transverse rows of 15 trihedral tubercles; 6 transverse rows of tubercles on the second segment of the tail; midbody scale rows across belly 20-22; midventral scales 89-97; males with a continuous series of 29-33 precloacal-femoral pores. The new species, Cyrtopodion vindhya sp. nov. is the fifth endemic species of reptile described in the last 15 years from the state of Gujarat that highlights the rich and unique diversity of this understudied region.


Asunto(s)
Lagartos , Animales , Masculino , Distribución Animal , Estructuras Animales , Ecosistema , India , Lagartos/anatomía & histología , Lagartos/clasificación
17.
Science ; 377(6607): 773-777, 2022 08 12.
Artículo en Inglés | MEDLINE | ID: mdl-35951680

RESUMEN

Hybridization between diverging lineages is associated with the generation and loss of species diversity, introgression, adaptation, and changes in reproductive mode, but it is unknown when and why it results in these divergent outcomes. We estimate a comprehensive evolutionary network for the largest group of unisexual vertebrates and use it to understand the evolutionary outcomes of hybridization. Our results show that rates of introgression between species decrease with time since divergence and suggest that species must attain a threshold of evolutionary divergence before hybridization results in transitions to unisexuality. Rates of hybridization also predict genome-wide patterns of genetic diversity in whiptail lizards. These results distinguish among models for hybridization that have not previously been tested and suggest that the evolutionary outcomes can be predictable.


Asunto(s)
Evolución Biológica , Hibridación Genética , Lagartos , Animales , Variación Genética , Genoma , Lagartos/clasificación , Lagartos/genética
18.
Proc Natl Acad Sci U S A ; 119(29): e2121036119, 2022 07 19.
Artículo en Inglés | MEDLINE | ID: mdl-35858351

RESUMEN

Many processes of biological diversification can simultaneously affect multiple evolutionary lineages. Examples include multiple members of a gene family diverging when a region of a chromosome is duplicated, multiple viral strains diverging at a "super-spreading" event, and a geological event fragmenting whole communities of species. It is difficult to test for patterns of shared divergences predicted by such processes because all phylogenetic methods assume that lineages diverge independently. We introduce a Bayesian phylogenetic approach to relax the assumption of independent, bifurcating divergences by expanding the space of topologies to include trees with shared and multifurcating divergences. This allows us to jointly infer phylogenetic relationships, divergence times, and patterns of divergences predicted by processes of diversification that affect multiple evolutionary lineages simultaneously or lead to more than two descendant lineages. Using simulations, we find that the method accurately infers shared and multifurcating divergence events when they occur and performs as well as current phylogenetic methods when divergences are independent and bifurcating. We apply our approach to genomic data from two genera of geckos from across the Philippines to test if past changes to the islands' landscape caused bursts of speciation. Unlike previous analyses restricted to only pairs of gecko populations, we find evidence for patterns of shared divergences. By generalizing the space of phylogenetic trees in a way that is independent from the likelihood model, our approach opens many avenues for future research into processes of diversification across the life sciences.


Asunto(s)
Biodiversidad , Lagartos , Filogenia , Animales , Teorema de Bayes , Genoma , Lagartos/clasificación , Lagartos/genética
19.
Proc Natl Acad Sci U S A ; 119(4)2022 01 25.
Artículo en Inglés | MEDLINE | ID: mdl-35058358

RESUMEN

Rates of species formation vary widely across the tree of life and contribute to massive disparities in species richness among clades. This variation can emerge from differences in metapopulation-level processes that affect the rates at which lineages diverge, persist, and evolve reproductive barriers and ecological differentiation. For example, populations that evolve reproductive barriers quickly should form new species at faster rates than populations that acquire reproductive barriers more slowly. This expectation implicitly links microevolutionary processes (the evolution of populations) and macroevolutionary patterns (the profound disparity in speciation rate across taxa). Here, leveraging extensive field sampling from the Neotropical Cerrado biome in a biogeographically controlled natural experiment, we test the role of an important microevolutionary process-the propensity for population isolation-as a control on speciation rate in lizards and snakes. By quantifying population genomic structure across a set of codistributed taxa with extensive and phylogenetically independent variation in speciation rate, we show that broad-scale patterns of species formation are decoupled from demographic and genetic processes that promote the formation of population isolates. Population isolation is likely a critical stage of speciation for many taxa, but our results suggest that interspecific variability in the propensity for isolation has little influence on speciation rates. These results suggest that other stages of speciation-including the rate at which reproductive barriers evolve and the extent to which newly formed populations persist-are likely to play a larger role than population isolation in controlling speciation rate variation in squamates.


Asunto(s)
Evolución Biológica , Especiación Genética , Aislamiento Reproductivo , Reptiles/genética , Animales , Biodiversidad , Evolución Molecular , Genética de Población , Lagartos/clasificación , Lagartos/genética , Filogenia , Filogeografía , Reptiles/clasificación , Serpientes/clasificación , Serpientes/genética
20.
Zootaxa ; 5224(1): 1-68, 2022 Dec 28.
Artículo en Inglés | MEDLINE | ID: mdl-37044498

RESUMEN

Revealing biodiversity allows the accurate determination of the underlying causes of many biological processes such as speciation and hybridization. These processes contain many complex patterns, especially in areas with high species diversity. As two of the prominent zoogeographic areas, Anatolia and Caucasus are also home to the genus Darevskia, which has a complex morphological structure and parthenogenetic speciation. Darevskia valentini and D. rudis are two largely distributed taxa of this genus, both of which have a controversial taxonomic delimitation. Here we performed both a highly detailed morphological comparison and a molecular evaluation for the populations in both species groups. The most comprehensive taxonomic revision of this complex was carried out to determine the cases where the data obtained were compatible or not with each approach. As a result of the obtained outputs, it seems that D. spitzenbergerae stat. nov., D. mirabilis stat. nov. and D. obscura stat. nov. should be accepted as the species level, this later with subspecies D. o. bischoffi comb. nov. and D. o. macromaculata comb. nov.. Also, we propose two new taxa: D. josefschmidtleri sp. nov. and D. spitzenbergerae wernermayeri ssp. nov.. It has also been shown that "lantzicyreni" subspecies belong to D. rudis instead of D. valentini. The extensive revision has contributed to subsequent studies to more accurately understand the past histories of species in the genus Darevskia.


Asunto(s)
Lagartos , Animales , Lagartos/clasificación , Lagartos/genética , Filogenia , Asia Occidental , Distribución Animal
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