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1.
Environ Sci Pollut Res Int ; 26(16): 16097-16104, 2019 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-30968298

RESUMEN

The phyllosphere provides appropriate conditions for colonization by microorganisms, including diazotrophic bacteria. However, a poor understanding of the effects of the atmospheric environment on the phyllospheric diazotrophic communities persists. We detected the biodiversity, abundance, and activity of nitrogen-fixing bacteria in the phyllospheres of two evergreen shrubs, Nerium indicum Mill. and Osmanthus sp., sampled from urban areas with heavy traffic, a college campus, and a forest. Quantitative PCR analysis indicated that the copy numbers of nifH sequences were highest in the phyllospheres of both plants in heavy-traffic urban areas and correlated with the recorded nitrogenase activities of the phyllospheres. Similarly, the phyllosphere from heavy-traffic urban areas also possessed the highest biodiversity indices of diazotrophic communities from both the two plants. Pyrosequencing analysis revealed a diversity of nifH sequences in phyllosphere that were mostly uniquely found in the phyllosphere, and many of these were proteobacteria-like and cyanobacteria-like. Members of the Proteobacteria, mostly of which were not closely related to unknown organisms, were detected exclusively in the phyllosphere and represented substantial fractions of their associated diazotrophic communities. Our study provides initial insight into the shifts in the biodiversity and community structure of N2-fixing microorganisms in the phyllospheres of different atmospheric environments.


Asunto(s)
Nerium/microbiología , Bacterias Fijadoras de Nitrógeno/fisiología , Oleaceae/microbiología , Biodiversidad , Cianobacterias/genética , Ecosistema , Bosques , Oxidorreductasas/genética , Proteobacteria/genética , Reacción en Cadena en Tiempo Real de la Polimerasa , Urbanización
2.
Int J Syst Evol Microbiol ; 69(1): 285-290, 2019 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-30511915

RESUMEN

A Gram-stain-positive, aerobic, short-rod-shaped, non-spore-forming actinobacterial strain, designated M8JJ-5T, was isolated from a surface-sterilized bark of Neriumindicum Mill. collected from Guizhou, China, and investigated by a polyphasic approach to determine its taxonomic position. Strain M8JJ-5T grew optimally without NaCl at 28 °C and at pH 7.0-8.0. Substrate mycelia and aerial mycelia were not formed, and no diffusible pigments were observed on the media tested. Phylogenetic analysis based on the 16S rRNA gene sequence showed that strain M8JJ-5T was most closely related to the type strains of genus Amnibacterium, and shared highest 16S rRNA gene sequence similarity of 97.29 % to Amnibacterium kyonggiense KSL51201-037T. The DNA G+C content of strain M8JJ-5T was 68.6 mol%. The cell-wall peptidoglycan contained l-2,4-diaminobutyric acid and MK-12, MK-11 were the major menaquinones. The predominant polar lipids were diphosphatidylglycerol, phosphatidylglycerol, an unidentified glycolipid, an unidentified phospholipid and an unidentified lipid, while the major fatty acids were iso-C16 : 0, anteiso-C15 : 0 and anteiso-C17 : 0. On the basis of phylogenetic, chemotaxonomic and phenotypic data, strain M8JJ-5T can be characterized to represent a novel species of the genus Amnibacterium, for which the name Amnibacteriumflavum sp. nov. is proposed. The type strain is M8JJ-5T (=KCTC 49089T=CGMCC 1.16390T).


Asunto(s)
Actinomycetales/clasificación , Nerium/microbiología , Filogenia , Corteza de la Planta/microbiología , Actinomycetales/aislamiento & purificación , Técnicas de Tipificación Bacteriana , Composición de Base , Pared Celular/química , China , ADN Bacteriano/genética , Ácidos Grasos/química , Glucolípidos/química , Peptidoglicano/química , Fosfolípidos/química , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Vitamina K 2/química
3.
Ying Yong Sheng Tai Xue Bao ; 29(5): 1653-1659, 2018 May.
Artículo en Chino | MEDLINE | ID: mdl-29797899

RESUMEN

The diversity of phyllosphere bacteria is one of the hotspots in the research area of plant-microbial relationship. There are still a lot of controversies in the main factors influencing community structure of phyllosphere bacteria. In this study, the phyllosphere bacterial community structure of Osmanthus fragrans and Nerium indicum grown in three habitats was investigated based on high-throughput sequencing and the main driving factors were examined. The results showed that there was no significant difference in phyllosphere bacterial diversity between the two plant species grown in three habitats. For phyllosphere bacterial community of two plant species from three habitats, the dominant phyla were Actinobacteria, Bacteroidetes, Chlamydiae, Cyanobacteria, Firmicutes and Proteobacteria, and the dominant genera included Methylobacterium, Sphingomonas, Hymenobacter, Polaromonas and Spirosoma. The structure of phyllosphere bacterial community was influenced by habitats, host species identity and species-habitat interaction, among which habitat showed the strongest effect.


Asunto(s)
Ecosistema , Nerium/microbiología , Microbiología del Suelo , Bacterias , Secuenciación de Nucleótidos de Alto Rendimiento , Filogenia , Plantas , ARN Ribosómico 16S
4.
Appl Microbiol Biotechnol ; 101(19): 7293-7302, 2017 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-28852824

RESUMEN

Traditional wastewater treatments based on activated sludge often encounter the problems of bulking and foaming, as well as malodor. To solve these problems, new treatment technologies have emerged in recent decades, including the ecological wastewater treatment process, which introduces selected local plants into the treatment system. With a focus on the underlying mechanisms of the ecological treatment process, we explored the microbial community biomass, composition, and function in the treatment system to understand the microbial growth in this system and its role in pollutant removal. Flow cytometry analysis revealed that ecological treatment significantly decreased influent bacterial quantity, with around 80% removal. 16S rRNA gene sequencing showed that the ecological treatment also altered the bacterial community structure of the wastewater, leading to a significant change in Comamonadaceae in the effluent. In the internal ecological system, because most of microbes aggregate in the plant rhizosphere and the sludge under plant roots, we selected two plant species (Nerium oleander and Arundo donax) to study the characteristics of rhizosphere and sludge microbes. Metagenomic results showed that the microbial community composition and function differed between the two species, and the microbial communities of A. donax were more sensitive to seasonal effects. Combined with their greater biomass and abundance of metabolic genes, microbes associated with N. oleander showed a greater contribution to pollutant removal. Further, the biodegradation pathways of some micropollutants, e.g., atrazine, were estimated.


Asunto(s)
Consorcios Microbianos , Eliminación de Residuos Líquidos , Aguas Residuales/microbiología , Purificación del Agua , Biodegradación Ambiental , Biomasa , Comamonadaceae/genética , Comamonadaceae/aislamiento & purificación , Metagenómica , Nerium/microbiología , Poaceae/microbiología , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
5.
Sci Rep ; 7(1): 6251, 2017 07 24.
Artículo en Inglés | MEDLINE | ID: mdl-28740172

RESUMEN

Below-ground soil microorganisms can modulate above-ground plant-insect interactions. It still needs to be determined whether this is a direct effect of single species or an indirect effect of shifts in soil microbial community assemblages. Evaluation of the soil microbiome as a whole is critical for understanding multi-trophic interactions, including those mediated by volatiles involving plants, herbivorous insects, predators/parasitoids and microorganisms. We implemented a regulated system comprising Nerium oleander plants grown in soil initially containing a sterile/non sterile inoculum, herbivore Aphis nerii and predator Chrysoperla carnea. After aphid attack, plants emitted a characteristic blend of volatiles derived from two biosynthetic classes: fatty acid catabolites and aromatic-derived products. Three aliphatic compounds were mainly detected in plants grown in the inoculated microbial soil, a blend which was preferentially chosen by C. carnea adult females. The contrasting effect of the initial inocula was attributed to the different microbial consortia developed in each treatment. We argue that differences in the relative abundance of the active microbial communities in the rhizosphere correlate with those in the emission of selected volatile compounds by attacked plants. The mechanisms involved in how the functional soil microbiome modulates inducible indirect defence of plants are discussed.


Asunto(s)
Áfidos/fisiología , Herbivoria , Insectos/fisiología , Nerium/inmunología , Enfermedades de las Plantas/microbiología , Conducta Predatoria , Rizosfera , Animales , Interacciones Huésped-Parásitos , Microbiota , Nerium/microbiología , Nerium/parasitología , Enfermedades de las Plantas/parasitología
6.
J Asian Nat Prod Res ; 19(12): 1245-1251, 2017 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-28395521

RESUMEN

A new p-hydroxybenzoic acid derivative named 4-(2'R, 4'-dihydroxybutoxy) benzoic acid (1) was isolated from the fermentation of Penicillium sp. R22 in Nerium indicum. The structure was elucidated by means of spectroscopic (HR-ESI-MS, NMR, IR, UV) and X-ray crystallographic methods. The antibacterial and antifungal activity of compound 1 was tested, and the results showed that compound 1 revealed potent antifungal activity against Colletotrichum gloeosporioides, Alternaria alternata, and Alteranria brassicae with MIC value of 31.2 µg/ml.


Asunto(s)
Antibacterianos/aislamiento & purificación , Antifúngicos/aislamiento & purificación , Benzoatos/aislamiento & purificación , Nerium/microbiología , Penicillium/química , Alternaria , Antibacterianos/química , Antibacterianos/farmacología , Antifúngicos/química , Antifúngicos/farmacología , Benzoatos/química , Benzoatos/farmacología , Colletotrichum , Fermentación , Hidroxibenzoatos/química , Pruebas de Sensibilidad Microbiana , Estructura Molecular
7.
Nat Prod Res ; 31(8): 951-958, 2017 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-27910702

RESUMEN

A new isoquinolone alkaloid named 5-hydroxy-8-methoxy-4-phenylisoquinolin-1(2H)-one (3), together with two known quinolinone alkaloids 3-O-methylviridicatin (1) and viridicatol (2) were isolated from the fermentation of an endophytic fungus Penicillium sp. R22 in Nerium indicum. Their structures were elucidated by NMR, IR and MS data, and were also confirmed by comparing with the reported data in the literature. Meanwhile, the antibacterial and antifungal activities of all compounds were tested, and the results showed that three compounds had strong antifungal activity. Among them, compound 2 revealed potent antibacterial activity against Staphylococcus aureus with MIC value of 15.6 µg/mL.


Asunto(s)
Alcaloides/química , Antibacterianos/farmacología , Antifúngicos/farmacología , Isoquinolinas/aislamiento & purificación , Nerium/microbiología , Penicillium/química , Alcaloides/aislamiento & purificación , Alcaloides/farmacología , Antibacterianos/química , Antifúngicos/química , Evaluación Preclínica de Medicamentos/métodos , Endófitos/química , Hidroxiquinolinas/química , Hidroxiquinolinas/aislamiento & purificación , Isoquinolinas/química , Isoquinolinas/farmacología , Pruebas de Sensibilidad Microbiana , Estructura Molecular , Penicillium/fisiología , Quinolonas/química , Quinolonas/aislamiento & purificación , Staphylococcus aureus/efectos de los fármacos
8.
Res Microbiol ; 167(9-10): 774-787, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27637152

RESUMEN

The plant pathogenic bacterium Pseudomonas savastanoi, the causal agent of olive and oleander knot disease, uses the so-called "indole-3-acetamide pathway" to convert tryptophan to indole-3-acetic acid (IAA) via a two-step pathway catalyzed by enzymes encoded by the genes in the iaaM/iaaH operon. Moreover, pathovar nerii of P. savastanoi is able to conjugate IAA to lysine to generate the less biologically active compound IAA-Lys via the enzyme IAA-lysine synthase encoded by the iaaL gene. Interestingly, iaaL is now known to be widespread in many Pseudomonas syringae pathovars, even in the absence of the iaaM and iaaH genes for IAA biosynthesis. Here, two knockout mutants, ΔiaaL and ΔiaaM, of strain Psn23 of P. savastanoi pv. nerii were produced. Pathogenicity tests using the host plant Nerium oleander showed that ΔiaaL and ΔiaaM were hypervirulent and hypovirulent, respectively and these features appeared to be related to their differential production of free IAA. Using the Phenotype Microarray approach, the chemical sensitivity of these mutants was shown to be comparable to that of wild-type Psn23. The main exception was 8 hydroxyquinoline, a toxic compound that is naturally present in plant exudates and is used as a biocide, which severely impaired the growth of ΔiaaL and ΔiaaM, as well as growth of the non-pathogenic mutant ΔhrpA, which lacks a functional Type Three Secretion System (TTSS). According to bioinformatics analysis of the Psn23 genome, a gene encoding a putative Multidrug and Toxic compound Extrusion (MATE) transporter, was found upstream of iaaL. Similarly to iaaL and iaaM, its expression appeared to be TTSS-dependent. Moreover, auxin-responsive elements were identified for the first time in the modular promoters of both the iaaL gene and the iaaM/iaaH operon of P. savastanoi, suggesting their IAA-inducible transcription. Gene expression analysis of several genes related to TTSS, IAA metabolism and drug resistance confirmed the presence of a concerted regulatory network in this phytopathogen among virulence, fitness and drug efflux.


Asunto(s)
Interacciones Huésped-Patógeno , Ácidos Indolacéticos/metabolismo , Nerium/microbiología , Reguladores del Crecimiento de las Plantas/metabolismo , Pseudomonas/metabolismo , Eliminación de Gen , Regulación Bacteriana de la Expresión Génica , Redes Reguladoras de Genes , Redes y Vías Metabólicas/genética , Enfermedades de las Plantas/microbiología , Pseudomonas/genética , Transcripción Genética , Virulencia
9.
PLoS One ; 9(11): e112463, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-25379725

RESUMEN

The bacterium Xylella fastidiosa is a plant pathogen with a history of economically damaging introductions of subspecies to regions where its other subspecies are native. Genetic evidence is presented demonstrating the introduction of two new taxa into Central America and their introgression into the native subspecies, X. fastidiosa subsp. fastidiosa. The data are from 10 genetic outliers detected by multilocus sequence typing (MLST) of isolates from Costa Rica. Six (five from oleander, one from coffee) defined a new sequence type (ST53) that carried alleles at six of the eight loci sequenced (five of the seven MLST loci) diagnostic of the South American subspecies Xylella fastidiosa subsp. pauca which causes two economically damaging plant diseases, citrus variegated chlorosis and coffee leaf scorch. The two remaining loci of ST53 carried alleles from what appears to be a new South American form of X. fastidiosa. Four isolates, classified as X. fastidiosa subsp. fastidiosa, showed a low level of introgression of non-native DNA. One grapevine isolate showed introgression of an allele from X. fastidiosa subsp. pauca while the other three (from citrus and coffee) showed introgression of an allele with similar ancestry to the alleles of unknown origin in ST53. The presence of X. fastidiosa subsp. pauca in Central America is troubling given its disease potential, and establishes another route for the introduction of this economically damaging subspecies into the US or elsewhere, a threat potentially compounded by the presence of a previously unknown form of X. fastidiosa.


Asunto(s)
Variación Genética , Enfermedades de las Plantas/microbiología , Plantas/microbiología , Xylella/genética , Alelos , América Central , Citrus/microbiología , Café/microbiología , Costa Rica , ADN Bacteriano/química , ADN Bacteriano/genética , Genotipo , Geografía , Especies Introducidas , Tipificación de Secuencias Multilocus , Nerium/microbiología , Filogenia , Análisis de Secuencia de ADN , Especificidad de la Especie , Vitis/microbiología , Xylella/clasificación , Xylella/aislamiento & purificación
10.
Microb Ecol ; 68(4): 842-58, 2014 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-25008981

RESUMEN

A type II restriction-modification system was found in a native plasmid of Pseudomonas savastanoi pv. savastanoi MLLI2. Functional analysis of the methyltransferase showed that the enzyme acts by protecting the DNA sequence CTGCAG from cleavage. Restriction endonuclease expression in recombinant Escherichia coli cells resulted in mutations in the REase sequence or transposition of insertion sequence 1A in the coding sequence, preventing lethal gene expression. Population screening detected homologous RM systems in other P. savastanoi strains and in the Pseudomonas syringae complex. An epidemiological survey carried out by sampling olive and oleander knots in two Italian regions showed an uneven diffusion of carrier strains, whose presence could be related to a selective advantage in maintaining the RM system in particular environments or subpopulations. Moreover, carrier strains can coexist in the same orchards, plants, and knot tissues with non-carriers, revealing unexpected genetic variability on a very small spatial scale. Phylogenetic analysis of the RM system and housekeeping gene sequences in the P. syringae complex demonstrated the ancient acquisition of the RM systems. However, the evolutionary history of the gene complex also showed the involvement of horizontal gene transfer between related strains and recombination events.


Asunto(s)
Proteínas Bacterianas/genética , Evolución Biológica , Enzimas de Restricción-Modificación del ADN/genética , Pseudomonas/enzimología , Pseudomonas/genética , Secuencia de Aminoácidos , Proteínas Bacterianas/química , Proteínas Bacterianas/metabolismo , Enzimas de Restricción-Modificación del ADN/química , Enzimas de Restricción-Modificación del ADN/metabolismo , Elementos Transponibles de ADN , Escherichia coli/genética , Transferencia de Gen Horizontal , Datos de Secuencia Molecular , Nerium/microbiología , Olea/microbiología , Organismos Modificados Genéticamente/genética , Filogenia
11.
Nat Prod Res ; 28(23): 2217-20, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24934634

RESUMEN

Bioactive compounds comprising secondary metabolites produced by endophytic fungi have wide applications in pharmacology and agriculture. Isolation, characterisation and evaluation of biological activities of secondary metabolites were carried out from Cochliobolus kusanoi an endophytic fungus of Nerium oleander L. The fungus was identified based on 18S rDNA sequence analysis. There are no reports available on the compounds of C.kusanoi hence, antimicrobial metabolite produced by this fungus was extracted and purified by fractionation using hexane, diethyl ether, dichloromethane, ethyl acetate and methanol. Out of all the solvent fractions, the methanol fraction exhibited better antimicrobial activity which was further purified and characterised as oosporein. Oosporein from C.kusanoi exhibited broad spectrum in vitro antimicrobial, antioxidant and cytotoxic activities. The characterisation and antioxidant activity of oosporein from C. kusanoi are reported for the first time.


Asunto(s)
Antiinfecciosos/aislamiento & purificación , Antiinfecciosos/farmacología , Antineoplásicos/aislamiento & purificación , Antineoplásicos/farmacología , Antioxidantes/aislamiento & purificación , Antioxidantes/farmacología , Ascomicetos/química , Benzoquinonas/farmacología , Nerium/microbiología , Animales , Antiinfecciosos/química , Antineoplásicos/química , Antioxidantes/química , Benzoquinonas/química , Cricetinae , Ensayos de Selección de Medicamentos Antitumorales , Hongos/efectos de los fármacos , Humanos
12.
Int J Syst Evol Microbiol ; 63(Pt 11): 4174-4180, 2013 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-23771623

RESUMEN

A novel desiccation-tolerant, xeroprotectant-producing bacterium, designated strain 4J27(T), was isolated from a Nerium oleander rhizosphere subjected to seasonal drought in Granada, Spain. Phylogenetic analysis based on 16S rRNA gene sequencing placed the isolate within the genus Arthrobacter, its closest relative being Arthrobacter phenanthrenivorans Shep3 DSM 18606(T), with which it showed 99.23 % 16S rRNA gene sequence similarity. DNA-DNA hybridization measurements showed less than 25 % relatedness between strain 4J27(T) and Arthrobacter phenanthrenivorans DSM 18606(T). The DNA base composition of strain 4J27(T) was 65.3 mol%. The main fatty acids were anteiso C15 : 0, anteiso C17 : 0, C16 : 0 and iso C16 : 0 and the major menaquinone was MK-9 (H2). The peptidoglycan type was A3α with an l-Lys-l-Ser-l-Thr-l-Ala interpeptide bridge. The bacterium tested positive for catalase activity and negative for oxidase activity. Phylogenetic, chemotaxonomic and phenotypic analyses indicated that the desiccation-tolerant strain 4J27(T) represents a novel species within the genus Arthrobacter, for which the name Arthrobacter siccitolerans is proposed. The type strain is 4J27(T) ( = CECT 8257(T) = LMG 27359(T)).


Asunto(s)
Arthrobacter/clasificación , Nerium/microbiología , Filogenia , Rizosfera , Microbiología del Suelo , Arthrobacter/genética , Arthrobacter/aislamiento & purificación , Técnicas de Tipificación Bacteriana , Composición de Base , ADN Bacteriano/genética , Desecación , Sequías , Ácidos Grasos/química , Hibridación de Ácido Nucleico , Peptidoglicano/química , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , España , Vitamina K 2/análogos & derivados , Vitamina K 2/química
13.
J Microbiol Methods ; 92(2): 108-12, 2013 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-23165115

RESUMEN

A TaqMan-based real-time PCR assay was developed for specific detection of strains of X. fastidiosa causing oleander leaf scorch. The assay uses primers WG-OLS-F1 and WG-OLS-R1 and the fluorescent probe WG-OLS-P1, designed based on unique sequences found only in the genome of oleander strain Ann1. The assay is specific, allowing detection of only oleander-infecting strains, not other strains of X. fastidiosa nor other plant-associated bacteria tested. The assay is also sensitive, with a detection limit of 10.4fg DNA of X. fastidiosa per reaction in vitro and in planta. The assay can also be applied to detect low numbers of X. fastidiosa in insect samples, or further developed into a multiplex real-time PCR assay to simultaneously detect and distinguish diverse strains of X. fastidiosa that may occupy the same hosts or insect vectors. Specific and sensitive detection and quantification of oleander strains of X. fastidiosa should be useful for disease diagnosis, epidemiological studies, management of oleander leaf scorch disease, and resistance screening for oleander shrubs.


Asunto(s)
Carga Bacteriana/métodos , Reacción en Cadena en Tiempo Real de la Polimerasa/métodos , Xylella/aislamiento & purificación , Animales , Cartilla de ADN/genética , Insectos/microbiología , Nerium/microbiología , Sondas de Oligonucleótidos/genética , Enfermedades de las Plantas/microbiología , Sensibilidad y Especificidad , Xylella/genética
14.
PLoS One ; 7(1): e30199, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-22295075

RESUMEN

Pseudomonas savastanoi is a serious pathogen of Olive, Oleander, Ash, and several other Oleaceae. Its epiphytic or endophytic presence in asymptomatic plants is crucial for the spread of Olive and Oleander knot disease, as already ascertained for P. savastanoi pv. savastanoi (Psv) on Olive and for pv. nerii (Psn) on Oleander, while no information is available for pv. fraxini (Psf) on Ash. Nothing is known yet about the distribution on the different host plants and the real host range of these pathovars in nature, although cross-infections were observed following artificial inoculations. A multiplex Real-Time PCR assay was recently developed to simultaneously and quantitatively discriminate in vitro and in planta these P. savastanoi pathovars, for routine culture confirmation and for epidemiological and diagnostical studies. Here an innovative High-Resolution Melting Analysis (HRMA)-based assay was set up to unequivocally discriminate Psv, Psn and Psf, according to several single nucleotide polymorphisms found in their Type Three Secretion System clusters. The genetic distances among 56 P. savastanoi strains belonging to these pathovars were also evaluated, confirming and refining data previously obtained by fAFLP. To our knowledge, this is the first time that HRMA is applied to a bacterial plant pathogen, and one of the few multiplex HRMA-based assays developed so far. This protocol provides a rapid, sensitive, specific tool to differentiate and detect Psv, Psn and Psf strains, also in vivo and against other related bacteria, with lower costs than conventional multiplex Real-Time PCR. Its application is particularly suitable for sanitary certification programs for P. savastanoi, aimed at avoiding the spreading of this phytopathogen through asymptomatic plants.


Asunto(s)
Técnicas de Genotipaje/métodos , Pseudomonas/clasificación , Pseudomonas/genética , Temperatura de Transición , ADN Bacteriano/química , ADN Bacteriano/genética , Nerium/microbiología , Desnaturalización de Ácido Nucleico , Polimorfismo de Nucleótido Simple/genética , Pseudomonas/patogenicidad , Reacción en Cadena en Tiempo Real de la Polimerasa , Especificidad de la Especie , Factores de Tiempo
15.
Antonie Van Leeuwenhoek ; 100(1): 129-35, 2011 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-21409554

RESUMEN

A gram-negative, motile, straight to curved rod shaped, pink pigmented bacterium was isolated from a soil sample collected from the rhizosphere of an Indian medicinal plant, Nerium indicum (Chuvanna arali) and subjected to a detailed polyphasic taxonomic study. The strain, designated as IMTB-1969(T), matched with most of the phenotypic and chemotaxonomic properties of the genus Pontibacter and represents a novel species. The major fatty acids of the strain were monounsaturated iso/anteiso branched C17 fatty acids (45.1%) and iso-C15:0 (16.5%). MK-7 was the predominant isoprenoid quinone. According to 16S rRNA gene sequence analysis, strain IMTB-1969(T) was indicated to belonged to the phylum Bacteroidetes and further phylogenetic analysis revealed that the strain IMTB-1969(T) belongs to the family Cytophagaceae and genus Pontibacter. The highest 16S rRNA gene sequence similarity was with Pontibacter korlensis CCTCC AB 206081(T) (97.2%) and lower sequence similarity was observed with other species in the genus Pontibacter (95.9-94.0%). DNA-DNA relatedness study of the strain IMTB-1969(T) confirmed that it represents a novel species. The G+C content of the genomic DNA was 52.2 (±0.5) mol%. The results of physiological and biochemical tests allowed the genotypic and phenotypic distinction of strain IMTB-1969(T) from its closest phylogenetic relatives. The strain IMTB-1969(T) should be classified as novel species of the genus Pontibacter, for which the name Pontibacter rhizosphera sp. nov. is proposed. The type strain is IMTB-1969(T) (=MTCC 10673(T) = DSM 24399(T)).


Asunto(s)
Cytophagaceae/aislamiento & purificación , Nerium/microbiología , Plantas Medicinales/microbiología , Rizosfera , Microbiología del Suelo , Cytophagaceae/clasificación , Cytophagaceae/genética , ADN Bacteriano/genética , Datos de Secuencia Molecular , Filogenia , ARN Ribosómico 16S/genética
16.
Phytopathology ; 100(6): 601-11, 2010 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-20465416

RESUMEN

Using a modified multilocus sequence typing (MLST) scheme for the bacterial plant pathogen Xylella fastidiosa based on the same seven housekeeping genes employed in a previously published MLST, we studied the genetic diversity of two subspecies, X. fastidiosa subsp. fastidiosa and X. fastidiosa subsp. sandyi, which cause Pierce's disease and oleander leaf scorch, respectively. Typing of 85 U.S. isolates (plus one from northern Mexico) of X. fastidiosa subsp. fastidiosa from 15 different plant hosts and 21 isolates of X. fastidiosa subsp. sandyi from 4 different hosts in California and Texas supported their subspecific status. Analysis using the MLST genes plus one cell-surface gene showed no significant genetic differentiation based on geography or host plant within either subspecies. Two cases of homologous recombination (with X. fastidiosa subsp. multiplex, the third U.S. subspecies) were detected in X. fastidiosa subsp. fastidiosa. Excluding recombination, MLST site polymorphism in X. fastidiosa subsp. fastidiosa (0.048%) and X. fastidiosa subsp. sandyi (0.000%) was substantially lower than in X. fastidiosa subsp. multiplex (0.240%), consistent with the hypothesis that X. fastidiosa subspp. fastidiosa and sandyi were introduced into the United States (probably just prior to 1880 and 1980, respectively). Using whole-genome analysis, we showed that MLST is more effective at genetic discrimination at the specific and subspecific level than other typing methods applied to X. fastidiosa. Moreover, MLST is the only technique effective in detecting recombination.


Asunto(s)
Variación Genética , Genoma Bacteriano , Xylella/genética , Técnicas de Tipificación Bacteriana , ADN Bacteriano/genética , Genes Bacterianos , Nerium/microbiología , Enfermedades de las Plantas/microbiología , Recombinación Genética , Selección Genética , Análisis de Secuencia de ADN , Xylella/clasificación
17.
Pak J Biol Sci ; 12(1): 58-63, 2009 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-19579919

RESUMEN

Anti-mycotic activity of the ethanol extracts from Nettle (Urtica dioica L.), Colocynth (Citrullus colocynthis L. Schrad), Konar (Ziziphus spina-christi L.) and Oleander (Nerium oleander L.) floral parts were screened in vitro against four important plant pathogenic fungi viz.; Alternaria alternate, Fusarium oxysporum, Fusarium solani and Rizoctonia solani using agar dilution bioassay. Extracts showed antifungal activity against all the tested fungi. Among the plants, Nettle and Colocynth were the most effective against A. alternate and R. solani while Oleander possesses the best inhibition on F. oxysporum and F. solani. Konar was the most effective extract by reducing the growth of Rizoctonia solani than other fungi. These results showed that extracts could be considered suitable alternatives to chemical additives for the control of fungal diseases in plants.


Asunto(s)
Antifúngicos/farmacología , Citrullus , Hongos/efectos de los fármacos , Nerium , Extractos Vegetales/farmacología , Urtica dioica , Ziziphus , Alternaria/efectos de los fármacos , Citrullus/química , Citrullus/microbiología , Fusarium/efectos de los fármacos , Pruebas de Sensibilidad Microbiana , Nerium/química , Nerium/microbiología , Enfermedades de las Plantas/microbiología , Urtica dioica/química , Urtica dioica/microbiología , Ziziphus/química , Ziziphus/microbiología
18.
Curr Microbiol ; 58(4): 393-8, 2009 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-19020933

RESUMEN

A pair of PCR primers, QH-OLS05/QH-OLS08 specific for strains of Xylella fastidiosa causing oleander leaf scorch was developed. The primers were designed according to a DNA sequence of a randomly amplified polymorphic DNA (RAPD)-polymerase chain reaction (PCR) product unique to oleander strains. The PCR assay using primer pair QH-OLS05/QH-OLS08 allowed quick and simple detection and identification of oleander strains in cultured bacterium and infected plant samples. The assay also can be applied to insect samples. Specific detection and identification of oleander strains of X. fastidiosa by PCR is useful for epidemiologic and etiologic studies of oleander leaf scorch by identifying what plants and insect vectors harbor or carry this particular strain of X. fastidiosa, especially in locations where mixed natural infections by oleander and other strains of X. fastidiosa occur.


Asunto(s)
Nerium/microbiología , Enfermedades de las Plantas/microbiología , Reacción en Cadena de la Polimerasa/métodos , Xylella/aislamiento & purificación , Secuencia de Bases , Clonación Molecular , Cartilla de ADN/genética , ADN Bacteriano/genética , Datos de Secuencia Molecular , Hojas de la Planta/microbiología , Técnica del ADN Polimorfo Amplificado Aleatorio , Especificidad de la Especie , Xylella/clasificación , Xylella/genética
19.
Phytopathology ; 98(7): 815-22, 2008 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-18943258

RESUMEN

This study assessed the use of in vitro olive plants to evaluate the virulence of Pseudomonas savastanoi pv. savastanoi strains isolated from olive and P. savastanoi pv. nerii strains isolated from oleander knots. First, different olive isolates were inoculated into stem wounds and differences in knot formation and weight of overgrowths were observed for the selected strains. Tissue proliferation was clearly visible in all inoculated plants 30 days after inoculation. Virulence of P. savastanoi pv. nerii mutants with defects in regard to biosynthesis of indole-3-acetic acid and/or cytokinins was tested using this system. In agreement with data previously reported, all mutant strains multiplied in olive but induced attenuated symptoms. To analyze the virulence of P. savastanoi pv. savastanoi affected in their ability to grow in olive tissue, a trpE tryptophan auxotroph mutant was generated using a collection of signature tagged mutagenesis transposons. Virulence of this mutant was clearly reduced as evidenced by swelling of the olive tissue that evolved into attenuated knots. Furthermore, mixed infections with its parental strain revealed that the wild-type strain completely out-competed the trpE mutant. Results shown here demonstrate the usefulness of in vitro olive plants for the analysis of P. savastanoi pvs. savastanoi and nerii virulence. In addition, this system offers the possibility of quantifying virulence differences as weight of overgrowths. Moreover, we established the basis for the use of mixed infections in combination with signature tagged mutagenesis for high-throughput functional genomic analysis of this bacterial pathogen.


Asunto(s)
Nerium/microbiología , Olea/microbiología , Enfermedades de las Plantas/microbiología , Pseudomonas/patogenicidad , Ácidos Indolacéticos/metabolismo , Mutación , Pseudomonas/genética , Pseudomonas/metabolismo , Triptófano/metabolismo , Virulencia/genética
20.
J Econ Entomol ; 99(4): 1058-64, 2006 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-16937656

RESUMEN

Xylella fastidiosa Wells is a bacterial pathogen that causes a variety of plant diseases, including Pierce's disease (PD) of grapevine, almond leaf scorch, alfalfa dwarf, citrus variegated chlorosis, and oleander leaf scorch (OLS). Numerous strains of this pathogen have been genetically characterized, and several different strains occur in the United States. The dominant vector in southern California is the glassy-winged sharpshooter, Homalodisca coagulata (Say) (Hemiptera: Cicadellidae). The high mobility of this insect, and its use of large numbers of host plant species, provides this vector with ample exposure to multiple strains of X. fastidiosa during its lifetime. To learn more about the ability of this vector to acquire, retain, and transmit multiple strains of the pathogen, we developed a polymerase chain reaction (PCR)-based method to detect and differentiate strains of X. fastidiosa present in individual glassy-winged sharpshooter adults. Insects were sequentially exposed to plants infected with a PD strain in grapevine and an OLS strain in oleander. After sequential exposure, a few insects tested positive for both strains (7%); however, in most cases individuals tested positive for only one strain (29% PD, 41% OLS). In transmission studies, individual adults transmitted either the PD or OLS strain of the pathogen at a rate (39%) similar to that previously reported after exposure to a single strain, but no single individual transmitted both strains of the pathogen. PD and OLS strains of X. fastidiosa remained detectable in glassy-winged sharpshooter, even when insects were fed on a plant species that was not a host of the strain for 1 wk.


Asunto(s)
Hemípteros/microbiología , Enfermedades de las Plantas/microbiología , Xylella/aislamiento & purificación , Animales , Cartilla de ADN , Transmisión de Enfermedad Infecciosa , Conducta Alimentaria , Nerium/microbiología , Especificidad de la Especie , Vitis/microbiología , Xylella/genética
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