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1.
J Inorg Biochem ; 258: 112638, 2024 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-38878680

RESUMEN

Bacteria use the second messenger cyclic dimeric guanosine monophosphate (c-di-GMP) to control biofilm formation and other key phenotypes in response to environmental signals. Changes in oxygen levels can alter c-di-GMP signaling through a family of proteins termed globin coupled sensors (GCS) that contain diguanylate cyclase domains. Previous studies have found that GCS diguanylate cyclase activity is controlled by ligand binding to the heme within the globin domain, with oxygen binding resulting in the greatest increase in catalytic activity. Herein, we present evidence that heme-edge residues control O2-dependent signaling in PccGCS, a GCS protein from Pectobacterium carotovorum, by modulating heme distortion. Using enzyme kinetics, resonance Raman spectroscopy, small angle X-ray scattering, and multi-wavelength analytical ultracentrifugation, we have developed an integrated model of the full-length PccGCS tetramer and have identified conformational changes associated with ligand binding, heme conformation, and cyclase activity. Taken together, these studies provide new insights into the mechanism by which O2 binding modulates activity of diguanylate cyclase-containing GCS proteins.


Asunto(s)
Proteínas Bacterianas , Hemo , Pectobacterium carotovorum , Liasas de Fósforo-Oxígeno , Liasas de Fósforo-Oxígeno/metabolismo , Liasas de Fósforo-Oxígeno/química , Hemo/química , Hemo/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/metabolismo , Pectobacterium carotovorum/enzimología , Conformación Proteica , Oxígeno/química , Oxígeno/metabolismo , GMP Cíclico/metabolismo , GMP Cíclico/análogos & derivados , GMP Cíclico/química , Proteínas de Escherichia coli
2.
PLoS One ; 16(12): e0256562, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34936645

RESUMEN

Pectinolytic enzymes or pectinases are synthesized naturally by numerous microbes and plants. These enzymes degrade various kinds of pectin which exist as the major component of the cell wall in plants. A pectinase gene encoding endo-polygalacturonase (endo-PGase) enzyme was isolated from Pectobacterium carotovorum a plant pathogenic strain of bacteria and successfully cloned into a secretion vector pHT43 having σA-dependent promoter for heterologous expression in Bacillus subtilis (WB800N).The desired PCR product was 1209bp which encoded an open reading frame of 402 amino acids. Recombinant proteins showed an estimated molecular weight of 48 kDa confirmed by sodium dodecyl sulphate-polyacrylamide-gel electrophoresis. Transformed B. subtilis competent cells harbouring the engineered pHT43 vector with the foreign endo-PGase gene were cultured in 2X-yeast extract tryptone medium and subsequently screened for enzyme activity at various temperatures and pH ranges. Optimal activity of recombinant endo-PGase was found at 40°C and pH 5.0. To assay the catalytic effect of metal ions, the recombinant enzyme was incubated with 1 mM concentration of various metal ions. Potassium chloride increased the enzyme activity while EDTA, Zn++ and Ca++, strongly inhibited the activity. The chromatographic analysis of enzymatic hydrolysates of polygalacturonic acid (PGA) and pectin substrates using HPLC and TLC revealed tri and tetra-galacturonates as the end products of recombinant endo-PGase hydrolysis. Conclusively, endo-PGase gene from the plant pathogenic strain was successfully expressed in Bacillus subtilis for the first time using pHT43 expression vector and could be assessed for enzyme production using a very simple medium with IPTG induction. These findings proposed that the Bacillus expression system might be safer to escape endotoxins for commercial enzyme production as compared to yeast and fungi. Additionally, the hydrolysis products generated by the recombinant endo-PGase activity offer their useful applications in food and beverage industry for quality products.


Asunto(s)
Bacillus subtilis/crecimiento & desarrollo , Ingeniería Metabólica/métodos , Pectobacterium carotovorum/enzimología , Poligalacturonasa/metabolismo , Bacillus subtilis/genética , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Clonación Molecular , Ácidos Hexurónicos/metabolismo , Pectinas/metabolismo , Pectobacterium carotovorum/genética , Poligalacturonasa/genética , Cloruro de Potasio/metabolismo , Regiones Promotoras Genéticas
3.
J Biol Chem ; 296: 100305, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33465378

RESUMEN

The type II secretion system (T2SS) transports fully folded proteins of various functions and structures through the outer membrane of Gram-negative bacteria. The molecular mechanisms of substrate recruitment by T2SS remain elusive but a prevailing view is that the secretion determinants could be of a structural nature. The phytopathogenic γ-proteobacteria, Pectobacterium carotovorum and Dickeya dadantii, secrete similar sets of homologous plant cell wall degrading enzymes, mainly pectinases, by similar T2SSs, called Out. However, the orthologous pectate lyases Pel3 and PelI from these bacteria, which share 67% of sequence identity, are not secreted by the counterpart T2SS of each bacterium, indicating a fine-tuned control of protein recruitment. To identify the related secretion determinants, we first performed a structural characterization and comparison of Pel3 with PelI using X-ray crystallography. Then, to assess the biological relevance of the observed structural variations, we conducted a loop-substitution analysis of Pel3 combined with secretion assays. We showed that there is not one element with a definite secondary structure but several distant and structurally flexible loop regions that are essential for the secretion of Pel3 and that these loop regions act together as a composite secretion signal. Interestingly, depending on the crystal contacts, one of these key secretion determinants undergoes disorder-to-order transitions that could reflect its transient structuration upon the contact with the appropriate T2SS components. We hypothesize that such T2SS-induced structuration of some intrinsically disordered zones of secretion substrates could be part of the recruitment mechanism used by T2SS.


Asunto(s)
Proteínas Bacterianas/química , Dickeya/enzimología , Pectobacterium carotovorum/enzimología , Polisacárido Liasas/química , Sistemas de Secreción Tipo II/química , Secuencia de Aminoácidos , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Sitios de Unión , Pared Celular/química , Pared Celular/microbiología , Clonación Molecular , Cristalografía por Rayos X , Dickeya/clasificación , Dickeya/genética , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Vectores Genéticos/química , Vectores Genéticos/metabolismo , Isoenzimas/química , Isoenzimas/genética , Isoenzimas/metabolismo , Modelos Moleculares , Pectobacterium carotovorum/clasificación , Pectobacterium carotovorum/genética , Filogenia , Células Vegetales/química , Células Vegetales/microbiología , Plantas/química , Plantas/microbiología , Polisacárido Liasas/genética , Polisacárido Liasas/metabolismo , Unión Proteica , Conformación Proteica en Hélice alfa , Conformación Proteica en Lámina beta , Dominios y Motivos de Interacción de Proteínas , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alineación de Secuencia , Homología de Secuencia de Aminoácido , Sistemas de Secreción Tipo II/genética , Sistemas de Secreción Tipo II/metabolismo
4.
Anal Biochem ; 598: 113694, 2020 06 01.
Artículo en Inglés | MEDLINE | ID: mdl-32217095

RESUMEN

Complex heterogeneous systems, such as micelles or blood plasma, represent a particularly challenging environment to measure the catalytic parameters of some enzymes, including l-asparaginase. Existing methods are strongly interfered by the presence of plasma proteins, amino acids, as well as other components of plasma. Here we show that FTIR spectroscopy enables continuous real-time measurement of catalytic activity of l-asparaginase, in native and in PEG-chitosan conjugated form, in aqueous solutions as well as in heterogeneous non-transparent multicomponent systems, including colloidal systems or blood plasma, with minimal or no sample preparation. The approach developed is potentially applicable to other enzymatic reactions where the spectroscopic properties of substrate and product do not allow direct measurement with absorption or fluorescence spectroscopy.


Asunto(s)
Asparaginasa/análisis , Asparaginasa/metabolismo , Biocatálisis , Quitosano/química , Humanos , Pectobacterium carotovorum/enzimología , Polietilenglicoles/química , Espectroscopía Infrarroja por Transformada de Fourier
5.
Biosci Rep ; 40(2)2020 02 28.
Artículo en Inglés | MEDLINE | ID: mdl-32039439

RESUMEN

The ability of organisms to sense and adapt to oxygen levels in their environment leads to changes in cellular phenotypes, including biofilm formation and virulence. Globin coupled sensors (GCSs) are a family of heme proteins that regulate diverse functions in response to O2 levels, including modulating synthesis of cyclic dimeric guanosine monophosphate (c-di-GMP), a bacterial second messenger that regulates biofilm formation. While GCS proteins have been demonstrated to regulate O2-dependent pathways, the mechanism by which the O2 binding event is transmitted from the globin domain to the cyclase domain is unknown. Using chemical cross-linking and subsequent liquid chromatography-tandem mass spectrometry, diguanylate cyclase (DGC)-containing GCS proteins from Bordetella pertussis (BpeGReg) and Pectobacterium carotovorum (PccGCS) have been demonstrated to form direct interactions between the globin domain and a middle domain π-helix. Additionally, mutation of the π-helix caused major changes in oligomerization and loss of DGC activity. Furthermore, results from assays with isolated globin and DGC domains found that DGC activity is affected by the cognate globin domain, indicating unique interactions between output domain and cognate globin sensor. Based on these studies a compact GCS structure, which depends on the middle domain π-helix for orienting the three domains, is needed for DGC activity and allows for direct sensor domain interactions with both middle and output domains to transmit the O2 binding signal. The insights from the present study improve our understanding of DGC regulation and provide insight into GCS signaling that may lead to the ability to rationally control O2-dependent GCS activity.


Asunto(s)
Proteínas Bacterianas/metabolismo , Bordetella pertussis/enzimología , Oxígeno/metabolismo , Pectobacterium carotovorum/enzimología , Liasas de Fósforo-Oxígeno/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Sitios de Unión , Bordetella pertussis/genética , GMP Cíclico/análogos & derivados , GMP Cíclico/metabolismo , Cinética , Pectobacterium carotovorum/genética , Liasas de Fósforo-Oxígeno/química , Liasas de Fósforo-Oxígeno/genética , Dominios y Motivos de Interacción de Proteínas , Multimerización de Proteína , Estructura Cuaternaria de Proteína , Estructura Secundaria de Proteína , Relación Estructura-Actividad
6.
Mar Drugs ; 17(5)2019 May 21.
Artículo en Inglés | MEDLINE | ID: mdl-31117226

RESUMEN

MomL is a marine-derived quorum-quenching (QQ) lactonase which can degrade various N-acyl homoserine lactones (AHLs). Intentional modification of MomL may lead to a highly efficient QQ enzyme with broad application potential. In this study, we used a rapid and efficient method combining error-prone polymerase chain reaction (epPCR), high-throughput screening and site-directed mutagenesis to identify highly active MomL mutants. In this way, we obtained two candidate mutants, MomLI144V and MomLV149A. These two mutants exhibited enhanced activities and blocked the production of pathogenic factors of Pectobacterium carotovorum subsp. carotovorum (Pcc). Besides, seven amino acids which are vital for MomL enzyme activity were identified. Substitutions of these amino acids (E238G/K205E/L254R) in MomL led to almost complete loss of its QQ activity. We then tested the effect of MomL and its mutants on Pcc-infected Chinese cabbage. The results indicated that MomL and its mutants (MomLL254R, MomLI144V, MomLV149A) significantly decreased the pathogenicity of Pcc. This study provides an efficient method for QQ enzyme modification and gives us new clues for further investigation on the catalytic mechanism of QQ lactonase.


Asunto(s)
Aminoácidos/análisis , Hidrolasas de Éster Carboxílico , Pectobacterium carotovorum/enzimología , Pectobacterium carotovorum/genética , Ingeniería de Proteínas , Sustitución de Aminoácidos , Brassica rapa/microbiología , Hidrolasas de Éster Carboxílico/química , Hidrolasas de Éster Carboxílico/genética , Hidrolasas de Éster Carboxílico/metabolismo , Activación Enzimática/genética , Mutación , Pectobacterium carotovorum/patogenicidad , Virulencia/genética
7.
Biologicals ; 59: 47-55, 2019 May.
Artículo en Inglés | MEDLINE | ID: mdl-30871932

RESUMEN

Acute lymphoblastic leukemia (ALL) is a type of cancer with a high incidence in children. The enzyme l-asparaginase (ASNase) constitutes a key element in the treatment of this disease. Four formulations of ASNase from a bacterial source are currently available. However, these formulations are characterized by their high immunogenicity, resulting in the inactivation of the drug, as well as in the occurrence of hypersensitivity reactions in a large number of patients. In this work, we performed an immunoinformatic analysis in order to clarify structural aspects of the immunogenicity of the asparaginase from Escherichia coli and Erwinia carotovora. For this purpose, we performed the prediction of immunogenic and allergenic epitopes in the structure of asparaginases by using the relative frequency of immunogenic peptides for the eight alleles most frequently distributed worldwide. This study showed that there are no significant differences in the level of immunogenicity between the two enzymes, while asparaginase from E. coli presented a higher relative frequency of allergenic epitopes. These results are consistent with previously published reports. However, from a structural point of view, to the best of our knowledge, this is the first report describing the structural determinants that contribute to the hypersensitivity response to this treatment.


Asunto(s)
Asparaginasa/inmunología , Proteínas Bacterianas/inmunología , Epítopos/inmunología , Escherichia coli/enzimología , Pectobacterium carotovorum/enzimología , Leucemia-Linfoma Linfoblástico de Células Precursoras/inmunología , Secuencia de Aminoácidos , Asparaginasa/efectos adversos , Asparaginasa/uso terapéutico , Proteínas Bacterianas/química , Proteínas Bacterianas/uso terapéutico , Niño , Simulación por Computador , Epítopos/química , Escherichia coli/genética , Humanos , Hipersensibilidad/etiología , Hipersensibilidad/inmunología , Pectobacterium carotovorum/genética , Leucemia-Linfoma Linfoblástico de Células Precursoras/tratamiento farmacológico , Conformación Proteica , Homología de Secuencia de Aminoácido , Especificidad de la Especie
8.
Recent Pat Biotechnol ; 13(1): 33-44, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-30318009

RESUMEN

BACKGROUND: L-ASNase (L-asparagine aminohydrolase EC 3.5.1.1) is used for the conversion of L-asparagine to L-aspartic acid and ammonia and also it was found as an agent of chemotherapeutic property according to recent patents. It is known as an anti-cancer agent and recently it has received an immense attention. Various microorganisms have the ability to secrete the L-ASNase. It is famous world-wide as anti-tumor medicine for acute lymphoblastic leukemia and lymphosarcoma. L-ASNase helps in deamination of Asparagine and Glutamine. SOURCE: L-ASNase mainly found in two bacterial sources; Escherichia coli and Erwinia carotovora. Isolation from plants: Endophytes were also a great source of L-ASNase. It was isolated from four types of plants named as; C. citratus, O. diffusa, M. koengii, and also P. bleo. APPLICATIONS: L-ASNase is used as a potential anti-tumor medicine. It plays a very much essential role for the growth of tumor cells. Tumor cells require a lot of asparagine for their growth. But ASNase converts to aspartate and ammonia from asparagine. So the tumor cell does not proliferate and fails to survive. The L-ASNase is used as the medicine for the major type of cancer like acute lymphocytic leukemia (ALL), brain. It also used as a medicine for central nervous system (CNS) tumors, and also for neuroblastoma. Two types of L-ASNase have been found. CONCLUSION: L-ASNase becomes a powerful anti-tumor medicine and researchers should develop a potent strain of asparaginase which can produce asparaginase in the industrial level. It is also used in the pharmaceutical industry and food industry on a broader scale.


Asunto(s)
Antineoplásicos/química , Asparaginasa/química , Asparaginasa/aislamiento & purificación , Patentes como Asunto , Antineoplásicos/uso terapéutico , Asparaginasa/genética , Asparagina/química , Escherichia coli/enzimología , Glutamina/química , Humanos , Neuroblastoma/tratamiento farmacológico , Pectobacterium carotovorum/enzimología
9.
Mol Biol Rep ; 46(1): 1313-1316, 2019 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-30446961

RESUMEN

Enzymatic prospection indicated that L-asparaginase from Erwinia carotovora (ECAR-LANS) posses low glutaminase activity and much effort has been made to produce therapeutic ECAR-LANS. However, its low stability precludes its use in therapy. Herein, biochemical and biophysical assays provided data highlighting the influence of solubilization and storage into ECAR-LANS structure, stability, and activity. Moreover, innovations in recombinant expression and purification guaranteed the purification of functional tetramers. According to solubilization condition, the L-asparaginase activity and temperature of melting ranged up to 25-32%, respectively. CD spectra indicate the tendency of ECAR-LANS to instability and the influence of ß-structures in activity. These results provide relevant information to guide formulations with prolonged action in the bloodstream.


Asunto(s)
Asparaginasa/metabolismo , Pectobacterium carotovorum/enzimología , Citoplasma/enzimología , Estabilidad de Enzimas , Fluorescencia , Periplasma/enzimología
10.
Mol Plant Microbe Interact ; 31(11): 1166-1178, 2018 11.
Artículo en Inglés | MEDLINE | ID: mdl-30198820

RESUMEN

Hfq is a RNA chaperone and participates in a wide range of cellular processes and pathways. In this study, mutation of hfq gene from Pectobacterium carotovorum subsp. carotovorum PccS1 led to significantly reduced virulence and plant cell wall-degrading enzyme (PCWDE) activities. In addition, the mutant exhibited decreased biofilm formation and motility and greatly attenuated carbapenem production as well as secretion of hemolysin coregulated protein (Hcp) as compared with wild-type strain PccS1. Moreover, a higher level of callose deposition was induced in Nicotiana benthamiana leaves when infiltrated with the mutant. A total of 26 small (s)RNA deletion mutants were obtained among a predicted 27 sRNAs, and three mutants exhibited reduced virulence in the host plant. These results suggest that hfq plays a key role in Pectobacterium virulence by positively impacting PCWDE production, secretion of the type VI secretion system, bacterial competition, and suppression of host plant responses.


Asunto(s)
Biopelículas/crecimiento & desarrollo , Calla (Planta)/microbiología , Proteína de Factor 1 del Huésped/metabolismo , Pectobacterium carotovorum/enzimología , Enfermedades de las Plantas/microbiología , Sistemas de Secreción Tipo VI/metabolismo , Secuencia de Aminoácidos , Calla (Planta)/inmunología , Pared Celular/metabolismo , Regulación Bacteriana de la Expresión Génica , Glucanos/metabolismo , Proteína de Factor 1 del Huésped/genética , Pectobacterium carotovorum/genética , Pectobacterium carotovorum/patogenicidad , Pectobacterium carotovorum/fisiología , Enfermedades de las Plantas/inmunología , Hojas de la Planta/inmunología , Hojas de la Planta/microbiología , Alineación de Secuencia , Sistemas de Secreción Tipo VI/genética , Virulencia
11.
Sci Rep ; 8(1): 6986, 2018 05 03.
Artículo en Inglés | MEDLINE | ID: mdl-29725125

RESUMEN

Targeting of recombinant proteins to the Escherichia coli periplasm is a desirable industrial processing tool to allow formation of disulphide bonds, aid folding and simplify recovery. Proteins are targeted across the inner membrane to the periplasm by an N-terminal signal peptide. The sequence of the signal peptide determines its functionality, but there is no method to predict signal peptide function for specific recombinant proteins, so multiple signal peptides must be screened for their ability to translocate each recombinant protein, limiting throughput. We present a screening system for optimising signal peptides for translocation of a single chain variable (scFv) antibody fragment employing TEM1 ß-lactamase (Bla) as a C-terminal reporter of periplasmic localisation. The Pectobacterium carotovorum PelB signal peptide was selected as the starting point for a mutagenic screen. ß-lactamase was fused to the C-terminal of scFv and ß-lactamase activity was correlated against scFv translocation. Signal peptide libraries were generated and screened for ß-lactamase activity, which correlated well to scFv::Bla production, although only some high activity clones had improved periplasmic translocation of scFv::Bla. Selected signal peptides were investigated in fed-batch fermentations for production and translocation of scFv::Bla and scFv without the Bla fusion. Improved signal peptides increased periplasmic scFv activity by ~40%.


Asunto(s)
Escherichia coli/genética , Escherichia coli/metabolismo , Pruebas Genéticas/métodos , Señales de Clasificación de Proteína/genética , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/metabolismo , beta-Lactamasas/análisis , Genes Reporteros , Ingeniería Metabólica/métodos , Mutagénesis , Pectobacterium carotovorum/enzimología , Pectobacterium carotovorum/genética , Periplasma/metabolismo , Polisacárido Liasas/genética , Transporte de Proteínas , Anticuerpos de Cadena Única/genética , Anticuerpos de Cadena Única/metabolismo , beta-Lactamasas/genética
12.
Food Chem ; 255: 1-7, 2018 Jul 30.
Artículo en Inglés | MEDLINE | ID: mdl-29571454

RESUMEN

To prevent the postharvest disease of Chinese cabbage and lettuce, hexanal was used as a control measure to inhibit N-acyl homoserine lactone (AHL) production and extracellular enzymes regulated by quorum-sensing (QS) in their main spoilage strains of Erwinia carotovora and Pseudomonas fluorescens. Firstly, the QS inhibition of hexanal was verified by significantly inhibiting violacein production (p < 0.05) in Chromobacterium violaceum CV026 at sub-MICs. ß-Galactosidase activities which reflected AHL production, were significantly inhibited by hexanal, its inhibitory effect was concentration-dependent under minimal inhibitory concentration (MIC) (p < 0.05). The detected extracellular enzymes activities decreased with the increase of hexanal concentration (p < 0.05), including cellulase, xylanase, pectate lyase, polygalacturonase, and protease. Chinese cabbage soft rot and lettuce leaf scorch could be significantly inhibited by hexanal (p < 0.05) without any phytotoxicity effect, the 1/2 MIC of hexanal showed the best inhibitory effect. And all the above effects showed a dose-dependent. A novel preservation technique in reducing the loss of vegetables due to spoilage based on the QS inhibitor was developed.


Asunto(s)
Aldehídos/farmacología , Glicósido Hidrolasas/antagonistas & inhibidores , Pectobacterium carotovorum/enzimología , Pseudomonas fluorescens/enzimología , Percepción de Quorum/efectos de los fármacos , Verduras/microbiología , 4-Butirolactona/análogos & derivados , Chromobacterium/efectos de los fármacos , Relación Dosis-Respuesta a Droga , Inhibidores Enzimáticos/farmacología , Conservación de Alimentos/métodos , Glicósido Hidrolasas/metabolismo , Pruebas de Sensibilidad Microbiana , Enfermedades de las Plantas/microbiología , Enfermedades de las Plantas/prevención & control , Hojas de la Planta , Polisacárido Liasas , Verduras/crecimiento & desarrollo
13.
Chembiochem ; 19(5): 521-526, 2018 03 02.
Artículo en Inglés | MEDLINE | ID: mdl-29215184

RESUMEN

Nitrile reductases are considered to be promising and environmentally benign nitrile-reducing biocatalysts to replace traditional metal catalysts. Unfortunately, the catalytic efficiencies of the nitrile reductases reported so far are very low. To date, all attempts to increase the catalytic activity of nitrile reductases by protein engineering have failed. In this work, we successfully increased the specific activity of a nitrile reductase from Pectobacterium carotovorum from 354 to 526 U gprot-1 by engineering the substrate binding pocket; moreover, the thermostability was also improved (≈2-fold), showing half-lives of 140 and 32 h at 30 and 40 °C, respectively. In the bioreduction of 2-amino-5-cyanopyrrolo[2,3-d]pyrimidin-4-one (preQ0 ) to 2-amino-5-aminomethylpyrrolo[2,3-d]pyrimidin-4-one (preQ1 ), the variant was advantageous over the wild-type enzyme with a higher reaction rate and complete conversion of the substrate within a shorter period. Homology modeling and docking analysis revealed some possible origins of the increased activity and stability. These results establish a solid basis for future engineering of nitrile reductases to increase the catalytic efficiency further, which is a prerequisite for applying these novel biocatalysts in synthetic chemistry.


Asunto(s)
Nitrilos/metabolismo , Oxidorreductasas/metabolismo , Pectobacterium carotovorum/enzimología , Sitios de Unión , Dominio Catalítico , Evolución Molecular Dirigida , Estabilidad de Enzimas , Simulación del Acoplamiento Molecular , Mutagénesis Sitio-Dirigida , Oxidación-Reducción , Oxidorreductasas/química , Oxidorreductasas/genética , Pectobacterium carotovorum/química , Pectobacterium carotovorum/genética , Pectobacterium carotovorum/metabolismo , Mutación Puntual , Ingeniería de Proteínas , Pirimidinas/metabolismo , Pirroles/metabolismo , Especificidad por Sustrato
14.
Sci Rep ; 7(1): 943, 2017 04 19.
Artículo en Inglés | MEDLINE | ID: mdl-28424524

RESUMEN

The screening of a metagenomic library of 250,000 clones generated from a hypersaline soil (Spain) allowed us to identify a single positive clone which confers the ability to degrade N-acyl homoserine lactones (AHLs). The sequencing of the fosmid revealed a 42,318 bp environmental insert characterized by 46 ORFs. The subcloning of these ORFs demonstrated that a single gene (hqiA) allowed AHL degradation. Enzymatic analysis using purified HqiA and HPLC/MS revealed that this protein has lactonase activity on a broad range of AHLs. The introduction of hqiA in the plant pathogen Pectobacterium carotovorum efficiently interfered with both the synthesis of AHLs and quorum-sensing regulated functions, such as swarming motility and the production of maceration enzymes. Bioinformatic analyses highlighted that HqiA showed no sequence homology with the known prototypic AHL lactonases or acylases, thus expanding the AHL-degrading enzymes with a new family related to the cysteine hydrolase (CHase) group. The complete sequence analysis of the fosmid showed that 31 ORFs out of the 46 identified were related to Deltaproteobacteria, whilst many intercalated ORFs presented high homology with other taxa. In this sense, hqiA appeared to be assigned to the Hyphomonas genus (Alphaproteobacteria), suggesting that horizontal gene transfer had occurred.


Asunto(s)
Hidrolasas de Éster Carboxílico/genética , Hidrolasas de Éster Carboxílico/metabolismo , Deltaproteobacteria/aislamiento & purificación , Pectobacterium carotovorum/fisiología , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Cromatografía Líquida de Alta Presión , Deltaproteobacteria/enzimología , Deltaproteobacteria/genética , Transferencia de Gen Horizontal , Espectrometría de Masas , Metagenómica/métodos , Familia de Multigenes , Sistemas de Lectura Abierta , Pectobacterium carotovorum/enzimología , Pectobacterium carotovorum/genética , Percepción de Quorum , Análisis de Secuencia de ADN , Microbiología del Suelo , España
15.
Biomed Khim ; 63(1): 62-74, 2017 Jan.
Artículo en Ruso | MEDLINE | ID: mdl-28251953

RESUMEN

The active and stable mutant forms of short chain cytoplasmic L-asparaginase type I of Rhodospirillum rubrum (RrA): RrA+N17, D60K, F61L, RrA+N17, A64V, E67K, RrA+N17, E149R, V150P, RrAE149R, V150P and RrAE149R, V150P, F151T were obtained by the method of site-directed mutagenesis. It is established that variants RrA-N17, E149R, V150P, F151T and RrАE149R, V150P are capable to reduce an expression hTERT subunit of telomerase and, hence, activity of telomeres in Jurkat cells, but not in cellular lysates. During too time, L-asparaginases of Escherichia coli, Erwinia carotovora and Wolinella succinogenes, mutant forms RrА+N17, D60K, F61L and RrА+N17, A64V, E67K do not suppress of telomerase activity. The assumption of existence in structure RrA of areas (amino acids residues in the position 146-164, 1-17, 60-67) which are responsible for suppression of telomerase activity is made. The received results show that antineoplastic activity of some variants RrA is connected both with reduction of concentration of free L-asparagine, and with expression suppression of hTERT telomerase subunit, that opens new prospects for antineoplastic therapy.


Asunto(s)
Antineoplásicos/farmacología , Asparaginasa/farmacología , Proteínas Bacterianas/farmacología , Mutación Puntual , Rhodospirillum rubrum/enzimología , Telomerasa/antagonistas & inhibidores , Telómero/efectos de los fármacos , Secuencia de Aminoácidos , Antineoplásicos/química , Antineoplásicos/metabolismo , Asparaginasa/química , Asparaginasa/genética , Asparaginasa/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Línea Celular Tumoral , Supervivencia Celular/efectos de los fármacos , Escherichia coli/química , Escherichia coli/enzimología , Escherichia coli/genética , Expresión Génica , Células HL-60 , Humanos , Células Jurkat , Modelos Moleculares , Mutagénesis Sitio-Dirigida , Pectobacterium carotovorum/química , Pectobacterium carotovorum/enzimología , Pectobacterium carotovorum/genética , Plásmidos/química , Plásmidos/metabolismo , Estructura Secundaria de Proteína , Rhodospirillum rubrum/química , Rhodospirillum rubrum/genética , Especificidad de la Especie , Relación Estructura-Actividad , Telomerasa/genética , Telomerasa/metabolismo , Telómero/química , Wolinella/química , Wolinella/enzimología , Wolinella/genética
16.
J Microbiol Biotechnol ; 27(4): 791-807, 2017 Apr 28.
Artículo en Inglés | MEDLINE | ID: mdl-28119513

RESUMEN

The type II secretion system (T2SS), which transports selected periplasmic proteins across the outer membrane, has rarely been studied in nonpathogens or in organisms classified as Betaproteobacteria. Therefore, we studied Cupriavidus metallidurans (Cme), a facultative chemilithoautotroph. Gel analysis of extracellular proteins revealed no remarkable differences between the wild type and the T2SS mutants. However, enzyme assays revealed that native extracellular alkaline phosphatase is a T2SS substrate, because activity was 10-fold greater for the wild type than a T2SS mutant. In Cme engineered to produce three Ralstonia solanacearum (Rso) exoenzymes, at least 95% of their total activities were extracellular, but unexpectedly high percentages of these exoenzymes remained extracellular in T2SS mutants cultured in rich broth. These conditions appear to permit an alternative secretion process, because neither cell lysis nor periplasmic leakage was observed when Cme produced a Pectobacterium carotovorum exoenzyme, and wild-type Cme cultured in minimal medium secreted 98% of Rso polygalacturonase, but 92% of this exoenzyme remained intracellular in T2SS mutants. We concluded that Cme has a functional T2SS despite lacking any abundant native T2SS substrates. The efficient secretion of three foreign exoenzymes by Cme is remarkable, but so too is the indication of an alternative secretion process in rich culture conditions. When not transiting the T2SS, we suggest that Rso exoenzymes are probably selectively packaged into outer membrane vesicles. Phylogenetic analysis of T2SS proteins supports the existence of at least three T2SS subfamilies, and we propose that Cme, as a representative of the Betaproteobacteria, could become a new useful model system for studying T2SS substrate specificity.


Asunto(s)
Proteínas Bacterianas/metabolismo , Cupriavidus/enzimología , Cupriavidus/metabolismo , Sistemas de Secreción Tipo II/metabolismo , Sistemas de Secreción Tipo II/fisiología , Fosfatasa Alcalina/genética , Fosfatasa Alcalina/metabolismo , Secuencia de Aminoácidos , Proteínas Bacterianas/genética , Transporte Biológico , Hidrolasas de Éster Carboxílico/genética , Hidrolasas de Éster Carboxílico/metabolismo , Celulasa/genética , Celulasa/metabolismo , Cupriavidus/genética , ADN Bacteriano , Pruebas de Enzimas , Escherichia coli/genética , Regulación Bacteriana de la Expresión Génica , Genes Bacterianos , Familia de Multigenes/genética , Mutación , Pectobacterium carotovorum/enzimología , Filogenia , Poligalacturonasa/genética , Poligalacturonasa/metabolismo , Dominios Proteicos , Estructura Secundaria de Proteína , Sistemas de Translocación de Proteínas/clasificación , Sistemas de Translocación de Proteínas/genética , Sistemas de Translocación de Proteínas/metabolismo , Sistemas de Translocación de Proteínas/fisiología , Ralstonia solanacearum/enzimología , Alineación de Secuencia , Sistemas de Secreción Tipo II/clasificación , Sistemas de Secreción Tipo II/genética
17.
Prikl Biokhim Mikrobiol ; 53(2): 164-72, 2017.
Artículo en Ruso | MEDLINE | ID: mdl-29508977

RESUMEN

N-hydroxysuccinimide ester of monomethoxy polyethylene glycol hemisuccinate was synthesized. It acylated amino groups in a molecule of recombinant L-asparaginase from Erwinia carotovora. A method of L-asparaginase modification by the obtained activated polyethylene glycol derivative was developed. The best results were produced by modification of the enzyme with a 25-fold excess of reagent relative to the enzyme tetramer. The modified L-asparaginase was isolated from the reaction mixture by gel filtration on Sepharose CL-6B. The purified bioconjugate did not contain PEG unbound to the protein, demonstrated high catalytic activity, and exhibited antiproliferative action on cell cultures.


Asunto(s)
Antineoplásicos Fitogénicos/química , Asparaginasa/química , Proteínas Bacterianas/química , Pectobacterium carotovorum/química , Polietilenglicoles/química , Antineoplásicos Fitogénicos/biosíntesis , Antineoplásicos Fitogénicos/farmacología , Asparaginasa/biosíntesis , Asparaginasa/genética , Asparaginasa/farmacología , Proteínas Bacterianas/biosíntesis , Proteínas Bacterianas/genética , Proteínas Bacterianas/farmacología , Supervivencia Celular/efectos de los fármacos , Cromatografía en Gel , Clonación Molecular , Reactivos de Enlaces Cruzados/química , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Células HL-60 , Humanos , Células Jurkat , Células K562 , Pectobacterium carotovorum/enzimología , Polietilenglicoles/farmacología , Ingeniería de Proteínas , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/farmacología , Succinimidas/química
18.
Prep Biochem Biotechnol ; 47(1): 74-80, 2017 Jan 02.
Artículo en Inglés | MEDLINE | ID: mdl-27070115

RESUMEN

The effect of dissolved oxygen (DO) level and pH (controlled/uncontrolled) was first studied to enhance the production of novel glutaminase-free L-asparaginase by Pectobacterium carotovorum MTCC 1428 in a batch bioreactor. The optimum level of DO was found to be 20%. The production of L-asparaginase was found to be maximum when pH of the medium was maintained at 8.5 after 12 h of fermentation. Under these conditions, P. carotovorum produced 17.97 U/mL of L-asparaginase corresponding to the productivity of 1497.50 U/L/h. The production of L-asparaginase was studied in fed-batch bioreactor by feeding L-asparagine (essential substrate for production) and/or glucose (carbon source for growth) at the end of the reaction period of 12 h. The initial medium containing both L-asparagine and glucose in the batch mode and L-asparagine in the feeding stream was found to be the best combination for enhanced production of glutaminase-free L-asparaginase. Under this condition, the L-asparaginase production was increased to 38.8 U/mL, which corresponded to a productivity of 1615.8 U/L/h. The production and productivity were increased by 115.8% and 7.9%, respectively, both of which are higher than those obtained in the batch bioreactor experiments.


Asunto(s)
Asparaginasa/biosíntesis , Reactores Biológicos , Pectobacterium carotovorum/enzimología , Asparaginasa/metabolismo , Medios de Cultivo , Glutaminasa/metabolismo
19.
Biochemistry ; 55(48): 6642-6651, 2016 Dec 06.
Artículo en Inglés | MEDLINE | ID: mdl-27933792

RESUMEN

Bacteria sense their environment to alter phenotypes, including biofilm formation, to survive changing conditions. Heme proteins play important roles in sensing the bacterial gaseous environment and controlling the switch between motile and sessile (biofilm) states. Globin coupled sensors (GCS), a family of heme proteins consisting of a globin domain linked by a central domain to an output domain, are often found with diguanylate cyclase output domains that synthesize c-di-GMP, a major regulator of biofilm formation. Characterization of diguanylate cyclase-containing GCS proteins from Bordetella pertussis and Pectobacterium carotovorum demonstrated that cyclase activity is controlled by ligand binding to the heme within the globin domain. Both O2 binding to the heme within the globin domain and c-di-GMP binding to a product-binding inhibitory site (I-site) within the cyclase domain control oligomerization states of the enzymes. Changes in oligomerization state caused by c-di-GMP binding to the I-site also affect O2 kinetics within the globin domain, suggesting that shifting the oligomer equilibrium leads to broad rearrangements throughout the protein. In addition, mutations within the I-site that eliminate product inhibition result in changes to the accessible oligomerization states and decreased catalytic activity. These studies provide insight into the mechanism by which ligand binding to the heme and I-site controls activity of GCS proteins and suggests a role for oligomerization-dependent activity in vivo.


Asunto(s)
Proteínas Bacterianas/metabolismo , GMP Cíclico/análogos & derivados , Proteínas de Escherichia coli/metabolismo , Globinas/metabolismo , Hemoproteínas/metabolismo , Oxígeno/metabolismo , Liasas de Fósforo-Oxígeno/metabolismo , Secuencia de Aminoácidos , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Sitios de Unión/genética , Biocatálisis , Biopelículas , Bordetella pertussis/enzimología , Bordetella pertussis/metabolismo , Bordetella pertussis/fisiología , GMP Cíclico/química , GMP Cíclico/metabolismo , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/genética , Globinas/química , Globinas/genética , Hemo/química , Hemo/metabolismo , Hemoproteínas/química , Hemoproteínas/genética , Cinética , Modelos Moleculares , Mutación , Oxígeno/química , Pectobacterium carotovorum/enzimología , Pectobacterium carotovorum/metabolismo , Pectobacterium carotovorum/fisiología , Liasas de Fósforo-Oxígeno/química , Liasas de Fósforo-Oxígeno/genética , Unión Proteica , Dominios Proteicos , Multimerización de Proteína , Homología de Secuencia de Aminoácido
20.
Enzyme Microb Technol ; 92: 86-93, 2016 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-27542748

RESUMEN

l-Asparaginases (l-ASNase, E.C. 3.5.1.1) catalyze the conversion of l-asparagine to l-aspartic acid and ammonia. In the present work, a new form of l-ASNase from a strain of Erwinia carotovora (EcaL-ASNase) was cloned, expressed in Escherichia coli as a soluble protein and characterized. The enzyme was purified to homogeneity by a single-step procedure comprising ion-exchange chromatography. The properties of the recombinant enzyme were investigated employing kinetic analysis and molecular modelling and the kinetic parameters (Km, kcat) were determined for a number of substrates. The enzyme was used to assemble a microplate-based biosensor that was used for the development of a simple assay for the determination of l-asparagine in biological samples. In this sensor, the enzyme was immobilized by crosslinking with glutaraldehyde and deposited into the well of a microplate in 96-well format. The sensing scheme was based on the colorimetric measurement of ammonia formation using the Nessler's reagent. This format is ideal for micro-volume applications and allows the use of the proposed biosensor in high-throughput applications for monitoring l-asparagine levels in serum and foods samples. Calibration curve was obtained for l-asparagine, with useful concentration range 10-200µΜ. The biosensor had a detection limit of 10µM for l-asparagine. The method's reproducibility was in the order of ±3-6% and l-asparagine mean recoveries were 101.5%.


Asunto(s)
Asparaginasa/metabolismo , Asparagina/análisis , Proteínas Bacterianas/metabolismo , Pectobacterium carotovorum/enzimología , Secuencia de Aminoácidos , Asparaginasa/química , Asparaginasa/genética , Asparagina/sangre , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Técnicas Biosensibles/métodos , Análisis Químico de la Sangre/métodos , Clonación Molecular , Estabilidad de Enzimas , Enzimas Inmovilizadas/química , Enzimas Inmovilizadas/genética , Enzimas Inmovilizadas/metabolismo , Análisis de los Alimentos/métodos , Ensayos Analíticos de Alto Rendimiento/métodos , Humanos , Cinética , Modelos Moleculares , Pectobacterium carotovorum/genética , Estructura Cuaternaria de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Reproducibilidad de los Resultados , Solanum tuberosum/química
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