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1.
Nat Commun ; 12(1): 5958, 2021 10 13.
Article En | MEDLINE | ID: mdl-34645820

Understanding the functional potential of the gut microbiome is of primary importance for the design of innovative strategies for allergy treatment and prevention. Here we report the gut microbiome features of 90 children affected by food (FA) or respiratory (RA) allergies and 30 age-matched, healthy controls (CT). We identify specific microbial signatures in the gut microbiome of allergic children, such as higher abundance of Ruminococcus gnavus and Faecalibacterium prausnitzii, and a depletion of Bifidobacterium longum, Bacteroides dorei, B. vulgatus and fiber-degrading taxa. The metagenome of allergic children shows a pro-inflammatory potential, with an enrichment of genes involved in the production of bacterial lipo-polysaccharides and urease. We demonstrate that specific gut microbiome signatures at baseline can be predictable of immune tolerance acquisition. Finally, a strain-level selection occurring in the gut microbiome of allergic subjects is identified. R. gnavus strains enriched in FA and RA showed lower ability to degrade fiber, and genes involved in the production of a pro-inflammatory polysaccharide. We demonstrate that a gut microbiome dysbiosis occurs in allergic children, with R. gnavus emerging as a main player in pediatric allergy. These findings may open new strategies in the development of innovative preventive and therapeutic approaches. Trial: NCT04750980.


Allergens/immunology , Food Hypersensitivity/microbiology , Gastrointestinal Microbiome/immunology , Immune Tolerance , Respiratory Hypersensitivity/microbiology , Allergens/adverse effects , Animals , Bacteroides/isolation & purification , Bacteroides/metabolism , Bifidobacterium longum/isolation & purification , Bifidobacterium longum/metabolism , Case-Control Studies , Child , Child, Preschool , Clostridiales/isolation & purification , Clostridiales/metabolism , Dander/adverse effects , Dander/immunology , Eggs/adverse effects , Faecalibacterium prausnitzii/isolation & purification , Faecalibacterium prausnitzii/metabolism , Female , Food Hypersensitivity/etiology , Food Hypersensitivity/immunology , Humans , Lipopolysaccharides/biosynthesis , Male , Milk/adverse effects , Milk/immunology , Nuts/adverse effects , Nuts/immunology , Pollen/chemistry , Pollen/immunology , Prunus persica/chemistry , Prunus persica/immunology , Pyroglyphidae/chemistry , Pyroglyphidae/immunology , Respiratory Hypersensitivity/etiology , Respiratory Hypersensitivity/immunology , Urease/biosynthesis
2.
Nat Immunol ; 22(3): 279-286, 2021 03.
Article En | MEDLINE | ID: mdl-33495652

The constituents of the gut microbiome are determined by the local habitat, which itself is shaped by immunological pressures, such as mucosal IgA. Using a mouse model of restricted antibody repertoire, we identified a role for antibody-microbe interactions in shaping a community of bacteria with an enhanced capacity to metabolize L-tyrosine. This model led to increased concentrations of p-cresol sulfate (PCS), which protected the host against allergic airway inflammation. PCS selectively reduced CCL20 production by airway epithelial cells due to an uncoupling of epidermal growth factor receptor (EGFR) and Toll-like receptor 4 (TLR4) signaling. Together, these data reveal a gut microbe-derived metabolite pathway that acts distally on the airway epithelium to reduce allergic airway responses, such as those underpinning asthma.


Antibodies/metabolism , Bacteria/metabolism , Cresols/metabolism , Gastrointestinal Microbiome , Intestines/microbiology , Lung/metabolism , Pneumonia/prevention & control , Respiratory Hypersensitivity/prevention & control , Sulfuric Acid Esters/metabolism , Tyrosine/metabolism , Administration, Oral , Allergens , Animals , Antibodies/immunology , Antibody Diversity , Bacteria/immunology , Cells, Cultured , Chemokine CCL20/metabolism , Coculture Techniques , Cresols/administration & dosage , Disease Models, Animal , ErbB Receptors/metabolism , Female , Host-Pathogen Interactions , Injections, Intravenous , Lung/immunology , Lung/pathology , Male , Mice, Inbred C57BL , Mice, Transgenic , Pneumonia/immunology , Pneumonia/metabolism , Pneumonia/microbiology , Respiratory Hypersensitivity/immunology , Respiratory Hypersensitivity/metabolism , Respiratory Hypersensitivity/microbiology , Signal Transduction , Sulfuric Acid Esters/administration & dosage , Toll-Like Receptor 4/metabolism , Tyrosine/administration & dosage
3.
Am J Respir Cell Mol Biol ; 64(3): 283-291, 2021 03.
Article En | MEDLINE | ID: mdl-33091322

In recent years, several new asthma therapeutics have been developed. Although many of these agents show promise in treating allergic asthma, they are less effective against nonallergic forms of asthma. The gut microbiome has important roles in human health and disease, and a growing body of evidence indicates a link between the gut microbiome and asthma. Here, we review those data focusing on the role of the microbiome in mouse models of nonallergic asthma including obese asthma and asthma triggered by exposure to air pollutants. We describe the impact of antibiotics, diet, and early life events on airway responses to the air pollutant ozone, including in the setting of obesity. We also review potential mechanisms responsible for gut-lung interactions focusing on bacterial-derived metabolites, the immune system, and hormones. Finally, we discuss future prospects for gut microbiome-targeted therapies such as fecal microbiome transplantation, prebiotics, probiotics, and prudent use of antibiotics. Better understanding of the role of the microbiome in airway responses may lead to exploration of new microbiome-targeted therapies to control asthma, especially nonallergic forms of asthma.


Gastrointestinal Microbiome , Ozone/adverse effects , Respiratory Hypersensitivity/chemically induced , Respiratory Hypersensitivity/microbiology , Animals , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use , Diet , Gastrointestinal Microbiome/drug effects , Humans , Lung/pathology , Respiratory Hypersensitivity/drug therapy
4.
Acta Med Acad ; 49(2): 156-163, 2020 Aug.
Article En | MEDLINE | ID: mdl-33189121

In this paper we propose to describe the available evidence from the literature on upper airway microbiome and its association with paediatric asthma and allergy. Recent advances in sequencing the bacterial 16S ribosomal RNA (16S rRNA) gene have enabled research into the complex communities of bacteria, known as the microbiome, that exist outside and inside the human body. Although the upper airways have long been recognised to host a microbiome, the lower airways are now known to contain a rich and diverse microbiome. This review first describes the microbiome of the upper and lower airways and then explores associations between the microbiome in the airways and bowel and asthma in children. The characteristics of the microbiome differ between nose and mouth, and between the mouth and bronchus in terms of burden and diversity of bacteria and in the predominant phyla present. There is a small literature which suggests that there are differences in the airway microbiome in early life between children who later have asthma compared to those who do not develop asthma. CONCLUSION: At the time of writing it is not clear whether the microbiome may cause childhood asthma, whether the conditions in the asthmatic airway encourage a different microbiome or whether a third factor confounds the relationship between airway microbiome and childhood asthma.


Asthma/microbiology , Microbiota , Respiratory System/microbiology , Child , Gastrointestinal Microbiome , Humans , Respiratory Hypersensitivity/microbiology
5.
Immunobiology ; 225(4): 151956, 2020 07.
Article En | MEDLINE | ID: mdl-32747016

Sensitivity to allergenic fungi (Alternaria alternata) is associated with acute, severe asthma attacks. Antigen presenting cells (APCs) in the lung sense environmental perturbations that induce cellular stress and metabolic changes and are critical for allergic airway inflammation. However, the mechanisms underlying such environmental sensing by APCs in the lung remains unclear. Here we show that acute Alternaria challenge rapidly induces neutrophil accumulation in airways, and alter expressions of Pyruvate Kinase (PKM2) and hypoxia-inducible factor -1α (Hif-1α) that correlates with proinflammatory mediator release. Blockade of IL33 signaling in vivo led to reduce oxidative stress and glycolysis in lung APCs. Lung-specific ablation of CD11c+ cells abrogates Alternaria-induced neutrophil accumulation and inflammation. Furthermore, administration of Alternaria into the airways stimulated APCs and elevate the expression of Glut-1. Mechanistically, we establish that PKM2 is a critical modulator of lung APC activation in Alternaria-induced acute inflammation. Allosteric activation of PKM2 by a small molecule ML265 or siRNA-mediated knock down correlated negatively with glycolysis and activation of APCs. These results collectively demonstrates that PKM2-mediated glycolytic reprogramming by fungal allergen Alternaria influences lung APC activation, thereby promotes acute airway inflammation. Our data support a model in which Alternaria sensitization in airways induce a circuitry of glycolysis and PKM2 regulation that confers an acute activation of APCs in the lung, whose targeting might represent a strategy for asthma treatment.


Alternaria/immunology , Alternariosis/metabolism , Alternariosis/microbiology , Antigen-Presenting Cells/immunology , Antigen-Presenting Cells/metabolism , Pyruvate Kinase/metabolism , Respiratory Hypersensitivity/metabolism , Respiratory Hypersensitivity/microbiology , Allergens/immunology , Animals , Asthma/etiology , Asthma/metabolism , Asthma/pathology , Biomarkers , Cytokines/metabolism , Disease Models, Animal , Glucose/metabolism , Glycolysis , Host-Pathogen Interactions/genetics , Host-Pathogen Interactions/immunology , Immunophenotyping , Inflammation Mediators/metabolism , Lung/immunology , Lung/metabolism , Lung/pathology , Mice , Mice, Knockout , Mice, Transgenic , Pyruvate Kinase/genetics , Reactive Oxygen Species/metabolism , Respiratory Hypersensitivity/pathology
6.
Inflammation ; 43(1): 32-43, 2020 Feb.
Article En | MEDLINE | ID: mdl-31894450

Air pollution events frequently occur in China during the winter. Most investigations of pollution studies have focused on the physical and chemical properties of PM2.5. Many of these studies have indicated that PM2.5 exacerbates asthma or eosinophil inflammation. However, few studies have evaluated the relationship between bacterial loads in PM2.5, and especially pathogenic bacteria and childhood asthma. Airborne PM2.5 samples from heavily polluted air were collected in Hangzhou, China between December 2014 and January 2015. PM2.5 and ovalbumin (OVA) were intratracheally administered twice in 4-week intervals to induce the allergic pulmonary inflammation in adolescent C57/BL6 mice. PM2.5 exposure caused neutrophilic alveolitis and bronchitis. In the presence of OVA, the levels of the Th2 cytokines IL-4, IL-12, and IL-17 were significantly increased in bronchoalveolar lavage fluids (BALF) after PM2.5 exposure, while eosinophil infiltration and mucin secretion were also induced. In addition to adjuvant effects on OVA-induced allergic inflammation, PM2.5 exposure also led to the maturation of dendritic cells. These results suggest that PM2.5 exposure may aggravate lung eosinophilia and that PM2.5-bound microbial can exacerbate allergic and inflammatory lung diseases.


Air Microbiology , Lung/microbiology , Particulate Matter/toxicity , Pneumonia/microbiology , Pulmonary Eosinophilia/microbiology , Respiratory Hypersensitivity/microbiology , Age Factors , Animals , Bacterial Load , Cells, Cultured , Coculture Techniques , Cytokines/metabolism , Dendritic Cells/metabolism , Dendritic Cells/microbiology , Disease Models, Animal , Lung/metabolism , Male , Mice, Inbred C57BL , Mice, Inbred ICR , Ovalbumin , Particle Size , Pneumonia/chemically induced , Pneumonia/metabolism , Pulmonary Eosinophilia/chemically induced , Pulmonary Eosinophilia/metabolism , Respiratory Hypersensitivity/chemically induced , Respiratory Hypersensitivity/metabolism , Th2 Cells/metabolism , Th2 Cells/microbiology
7.
Intern Med ; 58(24): 3569-3572, 2019 Dec 15.
Article En | MEDLINE | ID: mdl-31434820

A 42-year-old man with asthma presented in 2007 with chest infiltration and productive cough. Pycnoporus sanguineus and Perenniporia tephropora were repeatedly isolated from sputum and bronchial washing fluids. Because we lacked immunologic evidence, we could not diagnose him with allergic bronchopulmonary mycosis (ABPM) due to these basidiomycetous fungi. At that time, serum-specific IgE and IgG against Schizophyllum commune findings were negative. Inhaled beclomethasone/salmeterol improved his condition. Seven years later, mucous plugs obtained via bronchoscopy at a relapse were compatible with allergic mucin. Because S. commune was isolated from mucous plugs and serum-specific IgG against S. commune turned positive, we diagnosed the patient with ABPM due to S. commune.


Lung Diseases, Fungal/microbiology , Respiratory Hypersensitivity/microbiology , Schizophyllum/isolation & purification , Adult , Asthma/complications , Humans , Lung/diagnostic imaging , Lung/pathology , Lung Diseases, Fungal/immunology , Male , Radiography, Thoracic , Sputum/microbiology , Tomography, X-Ray Computed
8.
Microbiome ; 7(1): 82, 2019 06 03.
Article En | MEDLINE | ID: mdl-31159879

The particulate and biological components of indoor air have a substantial impact on human health, especially immune respiratory conditions such as asthma. To better explore the relationship between allergens, the microbial community, and the indoor living environment, we sampled the bedrooms of 65 homes in the Chicago area using 23the patient-friendly Inspirotec electrokinetic air sampling device, which collects airborne particles for characterization of both allergens and microbial DNA. The sampling device captured sufficient microbial material to enable 16S rRNA amplicon sequencing data to be generated for every sample in the study. Neither the presence of HEPA filters nor the height at which the air sampling device was placed had any influence on the microbial community profile. A core microbiota of 31 OTUs was present in more than three quarters of the samples, comprising around 45% of the relative sequence counts in each bedroom. The most abundant single organisms were Staphylococcus, with other core taxa both human and outdoor-associated. Bacterial alpha diversity was significantly increased in bedrooms that reported having open windows, those with flowering plants in the vicinity, and those in homes occupied by dogs. Porphyromonas, Moraxella, Sutterella, and Clostridium, along with family Neisseraceae, were significantly enriched in homes with dogs; interestingly, cats did not show a significant impact on microbial diversity or relative abundance. While dog allergen load was significantly correlated with bacterial alpha diversity, the taxa that significantly correlated with allergen burden did not exclusively overlap with those enriched in homes with dogs. Alternaria allergen load was positively correlated with bacterial alpha diversity, while Aspergillus allergen load was negatively correlated. The Alternaria allergen load was also significantly correlated with open windows. Microbial communities were significantly differentiated between rural, suburban, and urban homes and houses that were physically closer to each other maintained significantly more similar microbiota. We have demonstrated that it is possible to determine significant associations between allergen burden and the microbiota in air from the same sample and that these associations relate to the characteristics of the home and neighborhoods.


Air Microbiology , Air Pollution, Indoor/analysis , Allergens/analysis , Housing , Microbiota , Respiratory Hypersensitivity/microbiology , Animals , Asthma/etiology , Bacteria/classification , Bacteria/isolation & purification , Cats , Chicago , Dogs , Dust/analysis , Environmental Monitoring , Fungi/classification , Fungi/isolation & purification , Humans , Pets , RNA, Ribosomal, 16S
9.
Am J Respir Cell Mol Biol ; 61(6): 702-712, 2019 12.
Article En | MEDLINE | ID: mdl-31144984

Obesity is a risk factor for asthma, especially nonatopic asthma, and attenuates the efficacy of standard asthma therapeutics. Obesity also augments pulmonary responses to ozone, a nonatopic asthma trigger. The purpose of this study was to determine whether obesity-related alterations in gut microbiota contribute to these augmented responses to ozone. Ozone-induced increases in airway responsiveness, a canonical feature of asthma, were greater in obese db/db mice than in lean wild-type control mice. Depletion of gut microbiota with a cocktail of antibiotics attenuated obesity-related increases in the response to ozone, indicating a role for microbiota. Moreover, ozone-induced airway hyperresponsiveness was greater in germ-free mice that had been reconstituted with colonic contents of db/db than in wild-type mice. In addition, compared with dietary supplementation with the nonfermentable fiber cellulose, dietary supplementation with the fermentable fiber pectin attenuated obesity-related increases in the pulmonary response to ozone, likely by reducing ozone-induced release of IL-17A. Our data indicate a role for microbiota in obesity-related increases in the response to an asthma trigger and suggest that microbiome-based therapies such as prebiotics may provide an alternative therapeutic strategy for obese patients with asthma.


Gastrointestinal Microbiome/physiology , Obesity/complications , Ozone/toxicity , Respiratory Hypersensitivity/etiology , Airway Resistance , Animals , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use , Asthma/etiology , Asthma/therapy , Cellulose/administration & dosage , Dietary Fiber/administration & dosage , Fecal Microbiota Transplantation , Female , Fermentation , Gastrointestinal Microbiome/drug effects , Germ-Free Life , Mice , Mice, Inbred C57BL , Mice, Obese , Obesity/genetics , Obesity/microbiology , Obesity/physiopathology , Pectins/administration & dosage , Pectins/therapeutic use , Receptors, Leptin/deficiency , Respiratory Hypersensitivity/chemically induced , Respiratory Hypersensitivity/diet therapy , Respiratory Hypersensitivity/microbiology
10.
Biomed Res Int ; 2019: 1948519, 2019.
Article En | MEDLINE | ID: mdl-30723734

Our previous study showed that neonatal S. pneumoniae infection aggravated airway inflammation and airway hyperresponsiveness (AHR) in an OVA-induced allergic asthma model. As airway smooth muscle (ASM) plays a pivotal role in AHR development, we aim to investigate the effects of neonatal S. pneumoniae pneumonia on ASM structure and AHR development. Non-lethal neonatal pneumonia was established by intranasally infecting 1-week-old BALB/C mice with the S. pneumoniae strain D39. Five weeks after infection, the lungs were collected to assess the levels of α-SMA and the contractile proteins of ASM. Our results indicate that neonatal S. pneumoniae pneumonia significantly increased adulthood lung α-SMA and SMMHC proteins production and aggravated airway inflammatory cells infiltration and cytokines release. In addition, the neonatal S. pneumoniae pneumonia group had significantly higher Penh values compared to the uninfected controls. These data suggest that neonatal S. pneumoniae pneumonia promoted an aberrant ASM phenotype and AHR development in mice model.


Lung/metabolism , Muscle, Smooth/metabolism , Pneumonia/genetics , Respiratory Hypersensitivity/genetics , Actins/genetics , Animals , Animals, Newborn , Bronchoalveolar Lavage Fluid/microbiology , Disease Models, Animal , Humans , Lung/microbiology , Lung/pathology , Mice , Muscle, Smooth/microbiology , Muscle, Smooth/pathology , Phenotype , Pneumonia/complications , Pneumonia/microbiology , Pneumonia/pathology , Respiratory Hypersensitivity/complications , Respiratory Hypersensitivity/microbiology , Respiratory Hypersensitivity/pathology , Streptococcus pneumoniae/pathogenicity
11.
Am J Respir Cell Mol Biol ; 60(2): 198-208, 2019 02.
Article En | MEDLINE | ID: mdl-30240285

We have previously reported that the mouse gut microbiome contributes to pulmonary responses to ozone, a common asthma trigger, and that short-chain fatty acids, end products of bacterial fermentation, likely contribute to this role of the microbiome. A growing body of evidence indicates that there are sex-related differences in gut microbiota and these differences can have important functional consequences. The purpose of this study was to determine whether there are sex-related differences in the impact of the gut microbiota on pulmonary responses to ozone. After acute exposure to ozone, male mice developed greater airway hyperresponsiveness than female mice. This difference was abolished after antibiotic ablation of the gut microbiome. Moreover, weanling female pups housed in cages conditioned by adult male mice developed greater ozone-induced airway hyperresponsiveness than weanling female pups raised in cages conditioned by adult females. Finally, ad libitum oral administration via drinking water of the short-chain fatty acid propionate resulted in augmented ozone-induced airway hyperresponsiveness in male, but not female, mice. Overall, these data are consistent with the hypothesis that the microbiome contributes to sex differences in ozone-induced airway hyperresponsiveness, likely as a result of sex differences in the response to short-chain fatty acids.


Lung/drug effects , Microbiota/drug effects , Microbiota/physiology , Ozone/adverse effects , Respiratory Hypersensitivity/microbiology , Animals , Anti-Bacterial Agents/pharmacology , Bronchoalveolar Lavage Fluid/microbiology , Fatty Acids, Volatile/metabolism , Female , Lung/metabolism , Male , Mice, Inbred C57BL , Propionates/pharmacology , Respiratory Hypersensitivity/chemically induced , Respiratory Hypersensitivity/drug therapy , Sex Factors
12.
J Allergy Clin Immunol ; 143(4): 1496-1512.e11, 2019 04.
Article En | MEDLINE | ID: mdl-30240703

BACKGROUND: Transmaternal exposure to tobacco, microbes, nutrients, and other environmental factors shapes the fetal immune system through epigenetic processes. The gastric microbe Helicobacter pylori represents an ancestral constituent of the human microbiota that causes gastric disorders on the one hand and is inversely associated with allergies and chronic inflammatory conditions on the other. OBJECTIVE: Here we investigate the consequences of transmaternal exposure to H pylori in utero and/or during lactation for susceptibility to viral and bacterial infection, predisposition to allergic airway inflammation, and development of immune cell populations in the lungs and lymphoid organs. METHODS: We use experimental models of house dust mite- or ovalbumin-induced airway inflammation and influenza A virus or Citrobacter rodentium infection along with metagenomics analyses, multicolor flow cytometry, and bisulfite pyrosequencing, to study the effects of H pylori on allergy severity and immunologic and microbiome correlates thereof. RESULTS: Perinatal exposure to H pylori extract or its immunomodulator vacuolating cytotoxin confers robust protective effects against allergic airway inflammation not only in first- but also second-generation offspring but does not increase susceptibility to viral or bacterial infection. Immune correlates of allergy protection include skewing of regulatory over effector T cells, expansion of regulatory T-cell subsets expressing CXCR3 or retinoic acid-related orphan receptor γt, and demethylation of the forkhead box P3 (FOXP3) locus. The composition and diversity of the gastrointestinal microbiota is measurably affected by perinatal H pylori exposure. CONCLUSION: We conclude that exposure to H pylori has consequences not only for the carrier but also for subsequent generations that can be exploited for interventional purposes.


Helicobacter Infections/immunology , Prenatal Exposure Delayed Effects/immunology , Prenatal Exposure Delayed Effects/microbiology , Respiratory Hypersensitivity/immunology , Respiratory Hypersensitivity/microbiology , T-Lymphocytes, Regulatory/immunology , Animals , Female , Immune Tolerance/immunology , Mice, Inbred C57BL , Pregnancy
13.
PLoS Pathog ; 14(9): e1007260, 2018 09.
Article En | MEDLINE | ID: mdl-30235351

The gastrointestinal microbiota influences immune function throughout the body. The gut-lung axis refers to the concept that alterations of gut commensal microorganisms can have a distant effect on immune function in the lung. Overgrowth of intestinal Candida albicans has been previously observed to exacerbate allergic airways disease in mice, but whether subtler changes in intestinal fungal microbiota can affect allergic airways disease is less clear. In this study we have investigated the effects of the population expansion of commensal fungus Wallemia mellicola without overgrowth of the total fungal community. Wallemia spp. are commonly found as a minor component of the commensal gastrointestinal mycobiota in both humans and mice. Mice with an unaltered gut microbiota community resist population expansion when gavaged with W. mellicola; however, transient antibiotic depletion of gut microbiota creates a window of opportunity for expansion of W. mellicola following delivery of live spores to the gastrointestinal tract. This phenomenon is not universal as other commensal fungi (Aspergillus amstelodami, Epicoccum nigrum) do not expand when delivered to mice with antibiotic-depleted microbiota. Mice with Wallemia-expanded gut mycobiota experienced altered pulmonary immune responses to inhaled aeroallergens. Specifically, after induction of allergic airways disease with intratracheal house dust mite (HDM) antigen, mice demonstrated enhanced eosinophilic airway infiltration, airway hyperresponsiveness (AHR) to methacholine challenge, goblet cell hyperplasia, elevated bronchoalveolar lavage IL-5, and enhanced serum HDM IgG1. This phenomenon occurred with no detectable Wallemia in the lung. Targeted amplicon sequencing analysis of the gastrointestinal mycobiota revealed that expansion of W. mellicola in the gut was associated with additional alterations of bacterial and fungal commensal communities. We therefore colonized fungus-free Altered Schaedler Flora (ASF) mice with W. mellicola. ASF mice colonized with W. mellicola experienced enhanced severity of allergic airways disease compared to fungus-free control ASF mice without changes in bacterial community composition.


Basidiomycota/immunology , Basidiomycota/pathogenicity , Gastrointestinal Microbiome/immunology , Mycobiome/immunology , Respiratory Hypersensitivity/etiology , Allergens/administration & dosage , Animals , Anti-Bacterial Agents/adverse effects , Antigens, Dermatophagoides/administration & dosage , Basidiomycota/growth & development , Disease Models, Animal , Environmental Microbiology , Female , Gastrointestinal Microbiome/drug effects , Gastrointestinal Microbiome/genetics , Germ-Free Life/immunology , Humans , Mice , Mice, Inbred C57BL , Mycobiome/genetics , Respiratory Hypersensitivity/immunology , Respiratory Hypersensitivity/microbiology , Symbiosis/immunology
14.
Rev Mal Respir ; 35(2): 103-115, 2018 Feb.
Article Fr | MEDLINE | ID: mdl-29482867

INTRODUCTION: It has been demonstrated recently that the respiratory tract, considered for a long time to be sterile in the healthy subject, contains a vast community of bacteria called the respiratory microbiome. This microbiome, like the intestinal microbiome, is in constant interaction with the immune system of the human host. This relationship has allowed us to formulate some new theories on the pathophysiology of asthma. BACKGROUND: The respiratory microbiome of the asthmatic differs quantitatively and qualitatively from that of the healthy subject. Equally there seem to be differences in the microbiome according to the degree of severity of the asthma and the response to treatment with corticosteroids. It has been shown in murine models of allergic asthma that an early disturbance of the microbiome by different perinatal factors could be responsible for disorders of the development of the immune system, leading to the development of asthma in the long term. OUTLOOK: As a disorder of the microbiome might be implicated in the pathophysiology of asthma, the maintenance or restoration of a healthy microbiome is emerging as a possible new strategy in the management of the disease. CONCLUSION: The implication of the microbiome in the pathogenesis of human asthma seems to be more and more likely. This could have possible therapeutic implications, notably the restoration of a healthy microbiome.


Asthma/etiology , Microbiota/physiology , Respiratory System/microbiology , Animals , Asthma/immunology , Asthma/microbiology , Environment , Humans , Mice , Respiratory Hypersensitivity/microbiology , Risk Factors
15.
Physiol Rep ; 5(7)2017 Apr.
Article En | MEDLINE | ID: mdl-28364028

Despite improved awareness of work-related diseases and preventive measures, many workers are still at high risk of developing occupational hypersensitivity airway diseases. This stems from a lack of knowledge of bioaerosol composition and their potential effects on human health. Recently, archaea species were identified in bioaerosols, raising the possibility that they play a major role in exposure-related pathology. Specifically, Methanosphaera stadtmanae (MSS) and Methanobrevibacter smithii (MBS) are found in high concentrations in agricultural environments and respiratory exposure to crude extract demonstrates immunomodulatory activity in mice. Nevertheless, our knowledge of the specific impact of methanogens exposure on airway immunity and their potential to induce airway hypersensitivity responses in workers remains scant. Analysis of the lung mucosal response to methanogen crude extracts in mice demonstrated that MSS and MBS predominantly induced TH17 airway inflammation, typical of a type IV hypersensitivity response. Furthermore, the response to MSS was associated with antigen-specific IgG1 and IgG2a production. However, despite the presence of eosinophils after MSS exposure, only a weak TH2 response and no airway hyperresponsiveness were observed. Finally, using eosinophil and mast cell-deficient mice, we confirmed that these cells are dispensable for the TH17 response to MSS, although eosinophils likely contribute to the exacerbation of inflammatory processes induced by MSS crude extract exposure. We conclude that, as MSS induces a clear type IV hypersensitivity lung response, it has the potential to be harmful to workers frequently exposed to this methanogen, and that preventive measures should be taken to avoid chronic hypersensitivity disease development in workers.


Hypersensitivity/microbiology , Inflammation/microbiology , Lung/microbiology , Methanobacteriaceae , Respiratory Hypersensitivity/microbiology , Animals , Disease Models, Animal , Immunoglobulin G/analysis , Mice
16.
Laryngoscope ; 127(1): 59-63, 2017 01.
Article En | MEDLINE | ID: mdl-27577717

BACKGROUND: Chronic rhinosinusitis consists of several disease processes. Eosinophilic mucin is found in the subtypes of allergic fungal sinusitis (AFS) and eosinophilic mucin chronic rhinosinusitis (EMCRS). These entities frequently require surgical intervention and have high recurrence rates. OBJECTIVE: We aimed to determine factors in patients with AFS and EMCRS that may be associated with a higher rate of revision surgeries. Our hypothesis is that patients who have polyps, high Lund-Mackay score (LMS), and fungus may have higher revision rates. STUDY DESIGN: Retrospective cohort study. METHODS: This is a retrospective analysis of 117 patients identified over a 5-year period (2005-2009) with the diagnosis of AFS or EMCRS. Contingency tables were created to obtain the odds ratios estimates, and 95% confidence intervals were used to access the association between the outcome (having revision surgery or not) and other clinical binary predictors. RESULTS: Twenty-six of 117 (22%) of the study patients underwent revision surgery. Within the 2-year follow-up period, an additional five of 26 (19%) required another revision surgery. Average LMS was slightly higher in those who underwent revision surgery (16 vs. 13) on a scale of 0 to 24, with an overall mean score of 18 and standard deviation of 6.82 for the whole sample (117). Other factors evaluated were the presence of fungus, polyps, eosinophilic mucin, and the eosinophilic count and medical therapy received. CONCLUSION: The presence of eosinophilic mucin was significantly associated a higher rate of revision surgery. LEVEL OF EVIDENCE: 4. Laryngoscope, 127:59-63, 2017.


Mycoses/immunology , Mycoses/microbiology , Mycoses/surgery , Reoperation/statistics & numerical data , Respiratory Hypersensitivity/immunology , Respiratory Hypersensitivity/microbiology , Rhinitis/immunology , Rhinitis/microbiology , Rhinitis/surgery , Sinusitis/immunology , Sinusitis/microbiology , Sinusitis/surgery , Chronic Disease , Eosinophils/immunology , Eosinophils/microbiology , Female , Humans , Male , Middle Aged , Mucins/immunology , Nasal Polyps/immunology , Nasal Polyps/surgery , Retrospective Studies , Treatment Outcome
17.
J Investig Allergol Clin Immunol ; 26(6): 344-354, 2016.
Article En | MEDLINE | ID: mdl-27996940

Fungi are ubiquitous and form their own kingdom. Up to 80 genera of fungi have been linked to type I allergic disease, and yet, commercial reagents to test for sensitization are available for relatively few species. In terms of asthma, it is important to distinguish between species unable to grow at body temperature and those that can (thermotolerant) and thereby have the potential to colonize the respiratory tract. The former, which include the commonly studied Alternaria and Cladosporium genera, can act as aeroallergens whose clinical effects are predictably related to exposure levels. In contrast, thermotolerant species, which include fungi from the Candida, Aspergillus, and Penicillium genera, can cause a persistent allergenic stimulus independent of their airborne concentrations. Moreover, their ability to germinate in the airways provides a more diverse allergenic stimulus, and may result in noninvasive infection, which enhances inflammation. The close association between IgE sensitization to thermotolerant filamentous fungi and fixed airflow obstruction, bronchiectasis, and lung fibrosis suggests a much more tissue-damaging process than that seen with aeroallergens. This review provides an overview of fungal allergens and the patterns of clinical disease associated with exposure. It clarifies the various terminologies associated with fungal allergy in asthma and makes the case for a new term (allergic fungal airway disease) to include all people with asthma at risk of developing lung damage as a result of their fungal allergy. Lastly, it discusses the management of fungirelated asthma.


Antigens, Fungal/immunology , Fungi/immunology , Lung Diseases, Fungal/microbiology , Lung/microbiology , Respiratory Hypersensitivity/microbiology , Anti-Asthmatic Agents/therapeutic use , Antifungal Agents/therapeutic use , Fungi/classification , Fungi/growth & development , Humans , Immunotherapy/methods , Lung/immunology , Lung Diseases, Fungal/diagnosis , Lung Diseases, Fungal/immunology , Lung Diseases, Fungal/therapy , Prognosis , Respiratory Hypersensitivity/diagnosis , Respiratory Hypersensitivity/immunology , Respiratory Hypersensitivity/therapy
18.
Rev Alerg Mex ; 63(2): 143-53, 2016.
Article Es | MEDLINE | ID: mdl-27174757

BACKGROUND: As part of the etiology of respiratory allergy we have genetics, prenatal factors and sensitivity to various airborne allergens, between these fungi are found. Relationship has been found between sensitization to fungal in skin tests and allergy pathogenesis and aggravation. There is a few literature in Mexico and in the north of the country it is lacking regarding this problem. OBJECTIVE: Assess the prevalence of sensitization to fungi in patients with respiratory allergy in skin tests to airborne allergens; determine the most prevalent fungus and prevalence of sensitization to each species of fungus per year, to assess the prevalence of sensitization to fungi by years. MATERIAL AND METHOD: Cross-sectional, observational and descriptive study conducted from 1 January 2010 to 31 December 2014 in patients treated at the Regional Center of Allergy and Clinical Immunology (Monterrey, Mexico) where we reviewed a database with patients whom performed skin tests, sensitization to 6 species of fungi were evaluated. We performed tables of data capture and statistical analysis. RESULTS: 4880 patients had respiratory allergy, a 17.1% prevalence of sensitization to fungal skin tests was determined. The fungus specie most prevalent was Alternaria alternata with 5.5%. The year range with the highest prevalence of sensitization was 0-10 years with a 6.7. CONCLUSIONS: The prevalence of fungi sensitization was higher than the global prevalence found, but lower than the prevalence found in other researches in Mexico.


Antecedentes: la prevalencia de rinosinusitis crónica en pacientes adultos con inmunodeficiencia común variable (IDCV) es de 52%. Los pacientes con esta enfermedad tienen mayor frecuencia de rinosinusitis crónica, enfermedad inflamatoria que afecta a la mucosa de uno o más senos paranasales y la cavidad nasal. Objetivo: identificar los microorganismos de secreción del meato medio obtenida por endoscopia asociados con rinosinusitis crónica en pacientes adultos con inmunodeficiencia común variable (IDCV). Material y método: estudio descriptivo, transversal, que incluyó a pacientes adultos con inmunodeficiencia común variable, de quienes se obtuvo una muestra vía endoscópica de secreción del meato medio de ambas fosas nasales, que se envió a cultivo para bacterias aerobias, anaerobias y hongos. Se obtuvo consentimiento informado de todos los pacientes. Resultados: se estudiaron 29 pacientes: 18 mujeres y 11 hombres, con edad promedio de 40±13 años. Los resultados obtenidos fueron: 2 muestras de pacientes no tuvieron desarrollo microbiano, 24 tuvieron desarrollo de bacterias aerobias, en 3 casos hubo crecimiento fúngico sin desarrollo de bacterias anaerobias. Conclusiones: nuestros resultados muestran que los microorganismos asociados con rinosinusitis crónica en pacientes adultos con inmunodeficiencia común variable más comunes son: Moraxella catarrhalis, Staphylococcus, Sphingomonas paucimobilis y Citrobacter koseri; los agentes micóticos asociados fueron: Candida albicans y Aspergillus fumigatus.


Fungi/immunology , Respiratory Hypersensitivity/immunology , Allergens/immunology , Alternaria/immunology , Child , Child, Preschool , Cross-Sectional Studies , Humans , Infant , Infant, Newborn , Mexico/epidemiology , Prevalence , Respiratory Hypersensitivity/epidemiology , Respiratory Hypersensitivity/microbiology , Skin Tests/statistics & numerical data
19.
PLoS One ; 11(2): e0147778, 2016.
Article En | MEDLINE | ID: mdl-26872019

BACKGROUND: Recently, academic studies suggest that global growth of airway allergic disease has a close association with dietary changes including reduced consumption of fiber. Therefore, appropriate dietary fiber supplementation might be potential to prevent airway allergic disease (AAD). OBJECTIVE: We investigated whether dietary fiber intake suppressed the induction of AAD and tried to elucidate the possible underlying mechanisms. METHODS: The control mice and AAD model mice fed with 4% standard-fiber chow, while low-fiber group of mice fed with a 1.75% low-fiber chow. The two fiber-intervened groups including mice, apart from a standard-fiber diet, were also intragastric (i.g.) administrated daily with poorly fermentable cellulose or readily fermentable pectin (0.4% of daily body weight), respectively. All animals except normal mice were sensitized and challenged with ovalbumin (OVA) to induce airway allergic inflammation. Hallmarks of AAD were examined by histological analysis and ELISA. The variation in intestinal bacterial composition was assessed by qualitative analysis of 16S ribosomal DNA (rDNA) content in fecal samples using real-time PCR. RESULTS: Low-fiber diet aggravated inflammatory response in ovalbumin-induced allergic mice, whereas dietary fiber intake significantly suppressed the allergic responses, attenuated allergic symptoms of nasal rubbing and sneezing, decreased the pathology of eosinophil infiltration and goblet cell metaplasia in the nasal mucosa and lung, inhibited serum OVA-specific IgE levels, and lowered the levels of Th2 cytokines in NALF and BALF, but, increased Th1 (IFN-γ) cytokines. Additionally, dietary fiber intake also increased the proportion of Bacteroidetes and Actinobacteria, and decreased Firmicutes and Proteobacteria. Levels of probiotic bacteria, such as Lactobacillus and Bifidobacterium, were upgraded significantly. CONCLUSION: Long-term deficiency of dietary fiber intake increases the susceptibility to AAD, whereas proper fiber supplementation promotes effectively the balance of Th1/Th2 immunity and then attenuates allergic inflammatory responses significantly, as well as optimizes the structure of intestinal microbiota, which suggests potential for novel preventive and therapeutic intervention.


Dietary Fiber/therapeutic use , Gastrointestinal Microbiome/drug effects , Intestines/drug effects , Respiratory Hypersensitivity/diet therapy , Respiratory Hypersensitivity/immunology , Animals , Bacteroidetes/drug effects , Bacteroidetes/growth & development , Bifidobacterium/drug effects , Bifidobacterium/growth & development , Cellulose/administration & dosage , Disease Models, Animal , Eosinophils/drug effects , Eosinophils/immunology , Feces/microbiology , Female , Gastrointestinal Microbiome/immunology , Goblet Cells/drug effects , Goblet Cells/immunology , Humans , Immunoglobulin E/biosynthesis , Inflammation , Intestines/immunology , Intestines/microbiology , Lactobacillus/drug effects , Lactobacillus/growth & development , Lung/drug effects , Lung/immunology , Mice , Mice, Inbred BALB C , Nasal Mucosa/drug effects , Nasal Mucosa/immunology , Ovalbumin , Pectins/administration & dosage , Proteobacteria/drug effects , Proteobacteria/growth & development , RNA, Ribosomal, 16S/genetics , Respiratory Hypersensitivity/chemically induced , Respiratory Hypersensitivity/microbiology , Th1-Th2 Balance/drug effects
20.
Environ Int ; 89-90: 71-80, 2016.
Article En | MEDLINE | ID: mdl-26826364

Alternaria alternata spores are considered a well-known biological contaminant and a very common potent aeroallergen source that is found in environmental samples. The most intense exposure to A. alternata allergens is likely to occur outdoors; however, Alternaria and other allergenic fungi can colonize in indoor environments and thereby increase the fungal aeroallergen exposure levels. A consequence of human exposure to fungal aeroallergens, sensitization to A. alternata, has been unequivocally associated with increased asthma severity. Among allergenic proteins described in this fungal specie, the major allergen, Alt a 1, has been reported as the main elicitor of airborne allergies in patients affected by a mold allergy and considered a marker of primary sensitization to A. alternata. Moreover, A. alternata sensitization seems to be a triggering factor in the development of poly-sensitization, most likely because of the capability of A. alternata to produce, in addition to Alt a 1, a broad and complex array of cross-reactive allergens that present homologs in several other allergenic sources. The study and understanding of A. alternata allergen information may be the key to explaining why sensitization to A. alternata is a risk factor for asthma and also why the severity of asthma is associated to this mold. Compared to other common environmental allergenic sources, such as pollens and dust mites, fungi are reported to be neglected and underestimated. The rise of the A. alternata allergy has enabled more research into the role of this fungal specie and its allergenic components in the induction of IgE-mediated respiratory diseases. Indeed, recent research on the identification and characterization of A. alternata allergens has allowed for the consideration of new perspectives in the categorization of allergenic molds, assessment of exposure and diagnosis of fungi-induced allergies.


Allergens/analysis , Alternaria/immunology , Antigens, Fungal/analysis , Respiratory Hypersensitivity/microbiology , Allergens/immunology , Alternaria/growth & development , Animals , Antigens, Fungal/immunology , Asthma/immunology , Asthma/microbiology , Dust/immunology , Fungal Proteins/analysis , Fungal Proteins/immunology , Humans , Immunoglobulin E/immunology , Phylogeny , Pyroglyphidae/immunology , Respiratory Hypersensitivity/immunology , Risk Factors
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