Low seasonal variation in greater mouse-eared bat (Myotis myotis) blood parameters.

The greater mouse-eared bat (Myotis myotis) is a flagship species for the protection of hibernation and summer maternity roosts in the Western Palearctic region. A range of pathogenic agents is known to put pressure on populations, including the white-nose syndrome fungus, for which the species shows the highest prevalence and infection intensity of all European bat species. Here, we perform analysis of blood parameters characteristic for the species during its natural annual life cycle in order to establish reference values. Despite sexual dimorphism and some univariate differences, the overall multivariate pattern suggests low seasonal variation with homeostatic mechanisms effectively regulating haematology and blood biochemistry ranges. Overall, the species displayed a high haematocrit and haemoglobin content and high concentration of urea, while blood glucose levels in swarming and hibernating bats ranged from hypo- to normoglycaemic. Unlike blood pH, concentrations of electrolytes were wide ranging. To conclude, baseline data for blood physiology are a useful tool for providing suitable medical care in rescue centres, for studying population health in bats adapting to environmental change, and for understanding bat responses to stressors of conservation and/or zoonotic importance.

Mangrove metal pollution induces biological tolerance to Cd on a crab sentinel species subpopulation.

Metals are persistent pollutants, able to accumulate in the biota and magnify in trophic web. In the specific case of cadmium contamination, it has been the subject of considerable interest in recent years because of its biological effects and it is one of major pollutant in estuarine areas. Ucides cordatus is considered a mangrove local sentinel crab species in Brazil and there are previous studies reporting crab subpopulations living from pristine to heavily metal impacted areas in São Paulo coast (Southeastern Brazil). Taking into account the background knowledge about these subpopulations, we proposed the hypothesis that crabs from a highly polluted mangrove (Cubatão - CUB) have developed biological tolerance to cadmium compared to animals from an Environmental Protected Area (Jureia - JUR). Aiming to verify this hypothesis, we have investigated total bioaccumulation and subcellular partition of Cd, besides biomarkers' responses during a long-term exposure bioassay (28 days, with weekly sampling) using a supposedly safe Cd concentration (0.0022 mg L-1). Specimens from the pristine area (JUR) accumulated higher total Cd, as such as in its biologically active form in gills. Animals living in the polluted site (CUB) presented higher amounts of Cd in the mainly detoxifying tissue (hepatopancreas), which could be considered a pathway leading to tolerance for this metal. Multivariate analysis indicated that bioaccumulation (active, detoxified and total Cd) is linked to geno-cytotoxic damages. CUB subpopulation was considered more tolerant since it presented proportionally less damage and more capacity to allocate Cd in the main detoxifying forms and tissues.

Co-expression network analysis identifies gonad- and embryo-associated protein modules in the sentinel species Gammarus fossarum.

Next generation sequencing and mass spectrometry technologies have recently expanded the availability of whole transcriptomes and proteomes beyond classical model organisms in molecular biology, even in absence of an annotated genome. However, the fragmented nature of transcriptomic and proteomic data reduces the ability to interpret the data, notably in non-model organisms. Network-based approaches may help extracting important biological information from -omics datasets. The reproductive cycle of the freshwater crustacean Gammarus fossarum.provides an excellent case study to test the relevance of a network analysis in non-model organisms. Here, we illustrated how the use of a co-expression network analysis (based on Weighted Gene Co-expression Network Analysis algorithm, WGCNA) allowed identifying protein modules whose expression profiles described germ cell maturation and embryonic development in the freshwater crustacean Gammarus fossarum. Proteome datasets included testes, ovaries or embryos samples at different maturation or developmental stages, respectively. We identified an embryonic module correlated with mid-developmental stages corresponding to the organogenesis and it was characterized by enrichment in proteins involved in RNA editing and splicing. An ovarian module was enriched in vitellogenin-like proteins and clottable proteins, confirming the diversity of proteins belonging to the large lipid transfer family involved in oocytes maturations in this freshwater amphipod. Moreover, our results found evidence of a fine-tuned regulation between energy production by glycolysis and actin-myosin-dependent events in G. fossarum spermatogenesis. This study illustrates the importance of applying systems biology approaches to emergent animal models to improve the understanding of the molecular mechanisms regulating important physiological events with ecological relevance.

The biomass-density relationship in seagrasses and its use as an ecological indicator.

BACKGROUND: Biomass-density relations have been at the centre of a search for an index which describes the health of seagrass meadows. However, this search has been complicated by the intricacy of seagrass demographics and their complex biomass-density relations, a consequence mainly of their modular growth and clonality. Concomitantly, biomass-density upper boundaries have been determined for terrestrial plants and algae, reflecting their asymptotic maximum efficiencies of space occupation. Each stand's distance to its respective biomass-density upper boundary reflects its effective efficiency in packing biomass, which has proved a reliable ecological indicator in order to discriminate between taxonomic groups, functional groups and clonal vs. non-clonal growth. RESULTS: We gathered data from 32 studies on 10 seagrass species distributed worldwide and demonstrated that seagrasses are limited by their own boundary line, placed below the boundaries previously determined for algae and terrestrial plants. Then, we applied a new metric-dgrass: each stand's perpendicular distance to the seagrass boundary-and used this parameter to review fundamental aspects such as clonal growth patterns, depth distribution, seasonality, interspecific competition, and the effects of light, temperature and nutrients. CONCLUSIONS: Seagrasses occupy space less efficiently than algae and terrestrial plants. Using only their biomass and density data we established a new and efficient tool to describe space occupation by seagrasses. This was used with success to evaluate their meadows as an ecological indicator for the health of coastal ecosystems.

Tracking arctic marine mammal resilience in an era of rapid ecosystem alteration.

Global warming is significantly altering arctic marine ecosystems. Specifically, the precipitous loss of sea ice is creating a dichotomy between ice-dependent polar bears and pinnipeds that are losing habitat and some cetaceans that are gaining habitat. While final outcomes are hard to predict for the many and varied marine mammal populations that rely on arctic habitats, we suggest a simplified framework to assess status, based upon ranking a population's size, range, behavior, and health. This basic approach is proposed as a means to prioritize and expedite conservation and management efforts in an era of rapid ecosystem alteration.

The behaviour of the nematode, Steinernema feltiae (Nematoda: Steinernematidae) in sand contaminated with the industrial pollutant chromium VI.

This study set out to determine the suitability of the nematode Steinernema feltiae as a bioindicator for heavy metal pollution, specifically chromium VI. Nematodes were introduced into sand contaminated with concentrations of Cr VI+, in a range between 10 and 100 ppm, in increments of 10. Reproductive potential, development times and infectivity vs exposure times to Cr VI were employed as endpoints. It was observed that infective juveniles (IJ) from this nematode can survive and successfully infect host insects in the presence of Cr VI for as much as 13 days, and that the nematode increases its reproductive potential at concentrations up to 100 ppm Cr VI+. Conversely, development times (time in days taken for progeny to emerge after larval host death) and IJ infectivity rates were observed to reduce with increasing concentrations of Cr VI. The ability of this nematode to survive in the presence of high concentrations of Cr VI, and its ability to increase progeny numbers at the early stages of Cr VI exposure may provide a survival advantage for this nematode at contaminated sites. It may also demonstrate potential for development as a model species for toxicological assessment in in-situ field sampling.

Comparative ozone responses of cutleaf coneflowers (Rudbeckia laciniata var. digitata, var. ampla) from Rocky Mountain and Great Smoky Mountains National Parks, USA.

Cutleaf coneflower (Rudbeckia laciniata L. var. digitata) is native to Great Smoky Mountains National Park (GRSM) and an ozone bioindicator species. Variety ampla, whose ozone sensitivity is less well known, is native to Rocky Mountain National Park (ROMO). In the early 2000s, researchers found putative ozone symptoms on var. ampla and rhizomes were sent to Appalachian State University to verify that the symptoms were the result of ozone exposure. In 2011, potted plants were exposed to ambient ozone from May to August. These same plants were grown in open-top chambers (OTCs) in 2012 and 2013, and exposed to charcoal-filtered (CF), non-filtered (NF), elevated ozone (EO), NF+50ppb in 2012 for 47days and NF+30/NF+50ppb ozone in 2013 for 36 and 36days, respectively. Ozone symptoms similar to those found in ROMO (blue-black adaxial stippling) were reproduced both in ambient air and in the OTCs. Both varieties exhibited foliar injury in the OTCs in an exposure-dependent manner, verifying that symptoms resulted from ozone exposure. In two of the three study years, var. digitata appeared more sensitive than var. ampla. Exposure to EO caused reductions in ambient photosynthetic rate (A) and stomatal conductance (gs) for both varieties. Light response curves indicated that ozone reduced A, gs, and the apparent quantum yield while it increased the light compensation point. In CF air, var. ampla had higher light saturated A (18.2±1.04 vs 11.6±0.37µmolm-2s-1), higher light saturation (1833±166.7 vs 1108±141.7µmolm-2s-1), and lower Ci/Ca ratio (0.67±0.01 vs 0.77±0.01) than var. digitata. Coneflowers in both Parks are adversely affected by exposure to ambient ozone and if ozone concentrations increase in the Rocky Mountains, greater amounts of injury on var. ampla can be expected.

Organic vs. organic - soil arthropods as bioindicators of ecological sustainability in greenhouse system experiment under Mediterranean conditions.

Organic greenhouse (OGH) production is characterized by different systems and agricultural practices with diverse environmental impact. Soil arthropods are widely used as bioindicators of ecological sustainability in open field studies, while there is a lack of research on organic production for protected systems. This study assessed the soil arthropod abundance and diversity over a 2-year crop rotation in three systems of OGH production in the Mediterranean. The systems under assessment differed in soil fertility management: SUBST - a simplified system of organic production, based on an input substitution approach (use of guano and organic liquid fertilizers), AGROCOM - soil fertility mainly based on compost application and agroecological services crops (ASC) cultivation (tailored use of cover crops) as part of crop rotation, and AGROMAN - animal manure and ASC cultivation as part of crop rotation. Monitoring of soil fauna was performed by using pitfall traps and seven taxa were considered: Carabidae, Staphylinidae, Araneae, Opiliones, Isopoda, Myriapoda, and Collembola. Results demonstrated high potential of ASC cultivation as a technique for beneficial soil arthropod conservation in OGH conditions. SUBST system was dominated by Collembola in all crops, while AGROMAN and AGROCOM had more balanced relative abundance of Isopoda, Staphylinidae, and Aranea. Opiliones and Myriapoda were more affected by season, while Carabidae were poorly represented in the whole monitoring period. Despite the fact that all three production systems are in accordance with the European Union regulation on organic farming, findings of this study displayed significant differences among them and confirmed the suitability of soil arthropods as bioindicators in protected systems of organic farming.

Ocean sunfish as indicators for the 'rise of slime'.

Overfishing and ocean warming are drastically altering the community composition and size structure of marine ecosystems, eliminating large bodied species [1]. Against a backdrop of such environmental change, the heaviest of all bony fish, the ocean sunfish (Mola mola), seems an improbable survivor. Indeed this indolent giant is killed globally as bycatch, and is listed as 'Vulnerable'[2]. We undertook the most extensive aerial surveys of sunfish ever conducted and found surprisingly high abundances off the Atlantic and Mediterranean coasts of Western Europe. With up to 475 individuals per 100 km2, these figures are one order of magnitude higher than abundance estimates for other areas [3-5]. Using bioenergetic modelling, we estimate that each sunfish requires 71 kg day-1 of jellyfish, a biomass intake more than an order of magnitude greater than predicted for a similarly sized teleost. Scaled up to the population level, this equates to a remarkable 20,774 tonnes day-1 of predated jellyfish across our study area in summer. Sunfish abundance may be facilitated by overfishing and ocean warming, which together cause reduced predation of sunfish by sharks and elevated jellyfish biomass. Our combined survey and bioenergetic data provide the first-ever estimate of spatialized ocean sunfish daily food requirements, and stress the importance of this species as a global indicator for the 'rise of slime'. This hypothesis posits that, in an overfished world ocean exposed to global warming, gelatinous zooplankton should flourish, to the detriment of other mesotrophic species such as small pelagic fish, causing irreversible trophic cascades as well as a series of other environmental and economic issues.

Mapping toxic mineral contamination: the southern oyster drill, S. haemastoma (L., 1767), as evaluable sentinel species.

The nickel, chromium, arsenic, cadmium, and lead content have been evaluated, by ICP-MS, in digestive gland of the amphiatlantic gastropod Stramonita haemastoma, sampled along the highly anthropized Gulf of Milazzo (Central Mediterranean). Concentrations notably higher than those reported in literature for other Mediterranean Muricidae have been recorded. The results also indicated a different impact in different sites, according to distribution and typology of human activities, whilst recorded seasonal variations might relate with rapid metabolic response. Such preliminary results suggest S. haemastoma may be considered a promising sentinel species for inorganic contamination in marine environment, especially in terms of short-medium-term exposure.

High-throughput proteome dynamics for discovery of key proteins in sentinel species: Unsuspected vitellogenins diversity in the crustacean Gammarus fossarum.

UNLABELLED: In environmental science, omics-based approaches are widely used for the identification of gene products related to stress response. However, when dealing with non-model species, functional prediction of genes is challenging. Indeed, functional predictions are often obtained by sequence similarity searches and functional data from phylogenetically distant organisms, which can lead to inaccurate predictions due to quite different evolutionary scenarios. In oviparous females, vitellogenin production is vital for embryonic development, ensuring population viability. Its abnormal presence in fish male organisms is commonly employed as a biomarker of exposure to xenoestrogens, named endocrine disruptors. Here, in the freshwater amphipod Gammarus fossarum, we identified vitellogenin proteins by means of a proteome temporal dynamics analysis during oogenesis and embryogenesis. This exhaustive approach allows several functional molecular hypotheses in the oogenesis process to be drawn. Moreover, we revealed an unsuspected diversity of molecular players involved in yolk formation as eight proteins originating from different families of the large lipid transfer protein superfamily were identified as "true vitellogenins". BIOLOGICAL SIGNIFICANCE: In non-model species, next generation sequencing technologies development enables quickly deciphering gene and protein sequences but accuracy of associated functional prediction remains to be established. Here, in the crustacean Gammarus fossarum, a key sentinel species in freshwater biomonitoring, we identified key molecular players involved in the female reproduction by studying the proteome dynamics of ovaries and embryos. An unsuspected diversity of vitellogenin proteins was evidenced. These proteins being vital for offspring development, their high diversity may be advantageous for the organism's reproduction. Phylogenetic analysis showed that some forms are true vitellogenin orthologs while others are included in the apolipoprotein family, a paralogous group from the vitellogenin family. Among crustaceans, Gammarus fossarum is the first documented case where diverse protein families are involved in the yolk formation process.

The diversity of ant communities (Hymenoptera: Formicidae) and their connections with other arthropods from three temperate forests of Central Mexico / Diversidad de comunidades de hormigas (Hymenoptera: Formicidae) y sus conexiones con otros artrópodos en tres bosques templados del centro de México

AbstractAnts have been considered useful for bioindication because of their ecological characteristics. Nonetheless, among the characteristics of a bioindicator group, there must be a consistent and replicable response to disturbance. In this sense, divergent reactions have been found, even between taxons narrowly related. The objective of this work was to compare the diversity of the ant communities in three different temperate forests with different levels of disturbance, and to correlate their abundance and diversity of species, with that found in other arthropod communities of the same forests. The work was carried out in three municipalities in the North of the State of Mexico, where three types of different forests were identified by their degree of disturbance. These types include: 1) primary forest (PF), with typical species of a conserved forest; 2) mixed forest (MF), with species of a conserved forest and a reforestation effort; and 3) reforested forest (RF), with species used in reforestation efforts and indicative of disturbance. In each sample, an area of 2 500 m2 was selected. Each area had 16 pitfalls apiece and they were placed 10 m away from each other. Samples were collected twice; one from February through March 2009 (dry season) and another from August through September 2010 (rainy season), which produced a total of 192 traps. Obtained specimens were identified at the most taxonomically specific level. All data captured was transformed to √n + 0.5 and diversity index levels of Shannon and Simpson were calculated, as well as richness of species for ants, beetles, grasshoppers, true bugs, and spiders. The values of richness, diversity, and abundance were correlated with the Pearson coefficient, and to evaluate possible causal relationships between these, a path analysis was performed. Results suggested an important influence of the site over ant communities, and values of richness, abundance and diversity were correlated with the communities of spiders, beetles, grasshoppers and true bugs, but not for all the sites studied. Responses to environmental changes are not only on the numeric proportions of abundance, richness and diversity, but also in the indirect and casual ecological interactions. Finally, the data seems to indicate that the responses of the ants to the environmental changes are not necessarily reflected on other organisms’ communities, so the ants’ role as bioindicators can be limited. Rev. Biol. Trop. 64 (2): 571-585. Epub 2016 June 01.

ResumenPor sus características ecológicas las hormigas se han considerado útiles para la bioindicación. Sin embargo, entre los rasgos de un grupo bioindicador, debe haber una respuesta consistente y repetible a la perturbación. En este sentido, se han encontrado respuestas divergentes, incluso entre taxones estrechamente relacionados. El objetivo de este trabajo fue comparar la diversidad de las comunidades de hormigas en tres tipos de bosque templado con diferente nivel de perturbación y correlacionar su abundancia, riqueza de especies y la diversidad con aquella que se encuentra en otras comunidades de artrópodos en los mismos bosques. El trabajo se realizó en tres localidades del norte del Estado de México donde fueron identificados tres tipos de bosque diferenciados por grado de disturbio: 1) bosque primario (PF), con especies típicas de un bosque conservado; 2) bosque mixto (MF) con especies de bosque conservado y propias de reforestación y 3) bosque reforestado (RF) con especies utilizadas en reforestación e indicadoras de pertubación. En cada tipo de bosque se seleccionó un área de 2 500 m2 donde fueron colocadas 16 trampas de caída con una separación de 10 m. Fueron realizadas dos recolectas una de febrero a marzo 2009 (estación seca) y otra de agosto a septiembre 2010 (estación lluviosa), lo que dio un total de 192 trampas. Los especímenes obtenidos fueron identificados al nivel taxonómico más específico posible. Todos los datos de las capturas fueron transformados a √n+0.5 y fueron calculados los índices de diversidad de Shannon y Simpson y riqueza de especies tanto para hormigas como para escarabajos, chapulines, chiches y arañas. Los valores de riqueza, diversidad y abundancia fueron correlacionados con el coeficiente de Pearson y para evaluar posibles relaciones causales entre estos se realizó un análisis de sendero. Los resultados sugieren una influencia importante del sitio sobre las comunidades de hormigas y sus valores de riqueza, abundancia y diversidad están correlacionadas con las comunidades de arañas, escarabajos, chapulines y chinches, pero no para todos los sitios estudiados. Las respuestas a los cambios ambientales no sólo están en las proporciones numéricas de la abundancia, riqueza y diversidad sino también en las interacciones ecológicas indirectas y causales. Los resultados sugieren que las respuestas de las hormigas a los cambios ambientales no necesariamente se reflejan sobre comunidades de otros organismos por lo que su papel como bioindicadores puede ser limitado.

Seasonal and annual variations in physiological and biochemical responses from transplanted marine bioindicator species Mytilus spp. during a long term field exposure experiment.

In a pilot field study the long term response of transplanted bioindicator organisms Mytilus spp. was analyzed on the basis of physiological indices and biochemical measurements related to the energy budget. Three different time series with deployment times of eight to twelve months were compared according to seasonality and repeatability of the responses. Test organisms were incubated at a coastal station in the anthropogenically impacted estuary of the river Elbe and at a North Sea station located in vicinity to the Island of Helgoland in the German Bight. The stations differ in their hydrological as well as chemical characteristics. They can be discriminated by statistical factor analysis based on the measured biochemical parameter. Levels of all energy budget biomarker varied between seasons; however, the degree of variation of the specific response was differently expressed. The mussels deployed at Helgoland showed a reproducible high Condition Index in each sampling series and an oscillating Gonadosomatic Index representing the reproduction cycle. The lowest available energy was recorded in mussels at the estuarine sampling station compared to the off-shore station. This may be caused by the energetically costly maintenance of osmotic balance and consequently result in a lower amount of energy available for defense again chemical stress, growth and reproduction.

The diversity of ant communities (Hymenoptera: Formicidae) and their connections with other arthropods from three temperate forests of Central Mexico.

Ants have been considered useful for bioindication because of their ecological characteristics. Nonetheless, among the characteristics of a bioindicator group, there must be a consistent and replicable response to disturbance. In this sense, divergent reactions have been found, even between taxons narrowly related. The objective of this work was to compare the diversity of the ant communities in three different temperate forests with different levels of disturbance, and to correlate their abundance and diversity of species, with that found in other arthropod communities of the same forests. The work was carried out in three municipalities in the North of the State of Mexico, where three types of different forests were identified by their degree of disturbance. These types include: 1) primary forest (PF), with typical species of a conserved forest; 2) mixed forest (MF), with species of a conserved forest and a reforestation effort; and 3) reforested forest (RF), with species used in reforestation efforts and indicative of disturbance. In each sample, an area of 2 500 m2 was selected. Each area had 16 pitfalls apiece and they were placed 10 m away from each other. Samples were collected twice; one from February through March 2009 (dry season) and another from August through September 2010 (rainy season), which produced a total of 192 traps. Obtained specimens were identified at the most taxonomically specific level. All data captured was transformed to √n + 0.5 and diversity index levels of Shannon and Simpson were calculated, as well as richness of species for ants, beetles, grasshoppers, true bugs, and spiders. The values of richness, diversity, and abundance were correlated with the Pearson coefficient, and to evaluate possible causal relationships between these, a path analysis was performed. Results suggested an important influence of the site over ant communities, and values of richness, abundance and diversity were correlated with the communities of spiders, beetles, grasshoppers and true bugs, but not for all the sites studied. Responses to environmental changes are not only on the numeric proportions of abundance, richness and diversity, but also in the indirect and casual ecological interactions. Finally, the data seems to indicate that the responses of the ants to the environmental changes are not necessarily reflected on other organisms' communities, so the ants' role as bioindicators can be limited.