RESUMEN
Bovine torovirus (BToV) is an enteric pathogen that may cause diarrhea in calves and adult cattle, which could result in economic losses due to weight loss and decreased milk production. This study aimed to report the presence, the genetic characterization and the evolution of BToV in calves in Uruguay. BToV was detected in 7.9% (22/278) of fecal samples, being identified in dairy (9.2%, 22/239) but not beef (0.0%, 0/39) calves. BToV was detected in both diarrheic (14%, 6/43) and non-diarrheic (13.2%, 5/38) dairy calves. In addition, BToV was detected in the intestinal contents of 14.9% (7/47) of naturally deceased dairy calves. A complete genome (28,446 nucleotides) was obtained, which was the second outside Asia and the first in Latin America. In addition, partial S gene sequences were obtained to perform evolutionary analyses. Nucleotide and amino acid substitutions within and between outbreaks/farms were observed, alerting the continuous evolution of the virus. Through Bayesian analysis using BEAST, a recent origin (mid-60s) of BToV, possibly in Asia, was estimated, with two introductions into Uruguay from Asia and Europe in 2004 and 2013, respectively. The estimated evolutionary rate was 1.80 × 10-3 substitutions/site/year. Our findings emphasize the importance of continued surveillance and genetic characterization for the effective management and understanding of BToV's global epidemiology and evolution.
Asunto(s)
Enfermedades de los Bovinos , Heces , Genoma Viral , Filogenia , Infecciones por Torovirus , Torovirus , Animales , Uruguay/epidemiología , Bovinos , Torovirus/genética , Torovirus/aislamiento & purificación , Torovirus/clasificación , Heces/virología , Enfermedades de los Bovinos/virología , Enfermedades de los Bovinos/epidemiología , Infecciones por Torovirus/veterinaria , Infecciones por Torovirus/virología , Infecciones por Torovirus/epidemiología , Diarrea/virología , Diarrea/veterinaria , Diarrea/epidemiología , Evolución MolecularRESUMEN
Historically part of the coronavirus (CoV) family, torovirus (ToV) was recently classified in the new family Tobaniviridae. While reverse genetics systems have been established for various CoVs, none exist for ToVs. Here, we developed a reverse genetics system using an infectious full-length cDNA clone of bovine ToV (BToV) in a bacterial artificial chromosome (BAC). Recombinant BToV harboring genetic markers had the same phenotype as wild-type (wt) BToV. To generate two types of recombinant virus, the hemagglutinin-esterase (HE) gene was edited, as cell-adapted wtBToV generally loses full-length HE (HEf), resulting in soluble HE (HEs). First, recombinant viruses with HEf and hemagglutinin (HA)-tagged HEf or HEs genes were rescued. These exhibited no significant differences in their effect on virus growth in HRT18 cells, suggesting that HE is not essential for viral replication in these cells. Thereafter, we generated a recombinant virus (rEGFP) wherein HE was replaced by the enhanced green fluorescent protein (EGFP) gene. rEGFP expressed EGFP in infected cells but showed significantly lower levels of viral growth than wtBToV. Moreover, rEGFP readily deleted the EGFP gene after one passage. Interestingly, rEGFP variants with two mutations (C1442F and I3562T) in nonstructural proteins (NSPs) that emerged during passage exhibited improved EGFP expression, EGFP gene retention, and viral replication. An rEGFP into which both mutations were introduced displayed a phenotype similar to that of these variants, suggesting that the mutations contributed to EGFP gene acceptance. The current findings provide new insights into BToV, and reverse genetics will help advance the current understanding of this neglected pathogen. IMPORTANCE ToVs are diarrhea-causing pathogens detected in various species, including humans. Through the development of a BAC-based BToV, we introduced the first reverse genetics system for Tobaniviridae. Utilizing this system, recombinant BToVs with a full-length HE gene were generated. Remarkably, although clinical BToVs generally lose the HE gene after a few passages, some recombinant viruses generated in the current study retained the HE gene for up to 20 passages while accumulating mutations in NSPs, which suggested that these mutations may be involved in HE gene retention. The EGFP gene of recombinant viruses was unstable, but rEGFP into which two NSP mutations were introduced exhibited improved EGFP expression, gene retention, and viral replication. These data suggested the existence of an NSP-based acceptance or retention mechanism for exogenous RNA or HE genes. Recombinant BToVs and reverse genetics are powerful tools for understanding fundamental viral processes, pathogenesis, and BToV vaccine development.
Asunto(s)
ADN Complementario , Genoma Viral , Genética Inversa , Torovirus/genética , Animales , Bovinos , Enfermedades de los Bovinos/virología , Línea Celular , Células Cultivadas , Cromosomas Artificiales Bacterianos , Clonación Molecular , Genes Reporteros , Hemaglutininas Virales/genética , Hemaglutininas Virales/metabolismo , Mutación , Plásmidos/genética , Torovirus/aislamiento & purificación , Infecciones por Torovirus , TransfecciónRESUMEN
BACKGROUND: Coronaviruses are notorious pathogens that cause diarrheic and respiratory diseases in humans and animals. Although the epidemiology and pathogenicity of coronaviruses have gained substantial attention, little is known about bovine coronavirus in cattle, which possesses a close relationship with human coronavirus. Bovine torovirus (BToV) is a newly identified relevant pathogen associated with cattle diarrhoea and respiratory diseases, and its epidemiology in the Chinese cattle industry remains unknown. RESULTS: In this study, a total of 461 diarrhoeic faecal samples were collected from 38 different farms in three intensive cattle farming regions and analysed. Our results demonstrated that BToV is present in China, with a low prevalence rate of 1.74% (8/461). The full-length spike genes were further cloned from eight clinical samples (five farms in Henan Province). Phylogenetic analysis showed that two different subclades of BToV strains are circulating in China. Meanwhile, the three BToV strains identified from dairy calves, 18,307, 2YY and 5YY, all contained the amino acid variants R614Q, I801T, N841S and Q885E. CONCLUSIONS: This is the first report to confirm the presence of BToV in beef and dairy calves in China with diarrhea, which extend our understanding of the epidemiology of BToVs worldwide.
Asunto(s)
Enfermedades de los Bovinos/virología , Infecciones por Torovirus/veterinaria , Torovirus/aislamiento & purificación , Animales , Bovinos , Enfermedades de los Bovinos/epidemiología , China/epidemiología , Diarrea/epidemiología , Diarrea/veterinaria , Diarrea/virología , Heces/virología , Filogenia , ARN Viral , Análisis de Secuencia de ADN , Torovirus/genética , Infecciones por Torovirus/epidemiología , Infecciones por Torovirus/virología , Proteínas Virales/genéticaRESUMEN
Bovine torovirus (BToV) is a diarrhea-causing pathogen. In this study, 92 diarrheic fecal samples from five farms in four provinces in China were collected and tested for BToV using a RT-PCR assay, and 21.73% samples were found to be BToV positive. Moreover, two complete BToV genome sequences (MN073058 and MN073059) were obtained from the clinical samples, which were 28,297 and 28,301 nucleotides in length, respectively. Sequence analysis showed that the two isolates shared 10 identical amino acid mutations in the S protein compared to the complete S sequences of BToV available in the GenBank database. In addition, seven consecutive amino acid mutations were found from aa 1,486 to 1,492 in the S protein of isolate MN073058. Moreover, the two isolates shared one identical amino acid mutation in the receptor binding sites of the HE protein. To the best of our knowledge, this is the first report on the epidemic and genomic characterization of BToV in China, which is helpful for further understanding the genetic evolution of BToV.
Asunto(s)
Enfermedades de los Bovinos/virología , Diarrea/veterinaria , Infecciones por Torovirus/veterinaria , Torovirus/aislamiento & purificación , Animales , Bovinos , Diarrea/virología , Heces/virología , Genoma Viral , Genómica , Filogenia , Torovirus/clasificación , Torovirus/genética , Infecciones por Torovirus/virología , Proteínas Virales/genéticaRESUMEN
It can be judged that if the detection frequency of prevalent pathogenic viruses decreases, biosecurity has been enhanced. To monitor bovine farm biosecurity levels, one-step multiplex reverse transcription polymerase chain reaction (RT-PCR) for the simultaneous detection of group A rotavirus (RVA), bovine torovirus (BToV), bovine enterovirus (BEV), and bovine coronavirus (BCV) was designed, with the aim of configuring candidates for "viral pathogen indicators". A total of 322 bovine fecal samples were collected from calves aged less than three months at 48 bovine farms in Ibaraki and Chiba prefectures. At farm A, 20 calves were selected and sampled weekly for 12 weeks (184 samples); at farm B, 10 calves were selected and sampled for five weeks (50 samples); and at the rest of the 46 farms, 88 calves were sampled once. The screening on the 358 field samples proved positive for 27 RVA, 4 BToV, 55 BEV, and 52 BCV. In the successive sampling, RVA was detected once but not continuously, whereas BEV and BCV were detected in succession for up to five weeks. The results revealed that RVA was the primary agent among the positive samples obtained from calves aged three weeks or less, while BEV was the primary among those from the older than three weeks old. They can be employed as useful viral pathogen indicators for soundly evaluating biosecurity at bovine farms.
Asunto(s)
Enfermedades de los Bovinos/virología , Coronavirus Bovino/aislamiento & purificación , Enterovirus Bovino/aislamiento & purificación , Rotavirus/aislamiento & purificación , Torovirus/aislamiento & purificación , Animales , Bovinos , Enfermedades de los Bovinos/diagnóstico , Enfermedades de los Bovinos/prevención & control , Heces/virología , Japón/epidemiología , Reacción en Cadena de la Polimerasa Multiplex/métodos , Reacción en Cadena de la Polimerasa Multiplex/veterinariaRESUMEN
We sequenced the complete genome of a porcine torovirus (PToV) strain from Japan for the first time. Whole-genome analysis revealed that this strain (Iba/2018) has a mosaic sequence composed of at least three genome backgrounds, related to US, Chinese and German PToV strains. Clear recombination breakpoints were detected in the M and HE coding regions. A similarity plot and structural analysis demonstrated that the HE coding region exhibits the highest diversity, and the most sequence variation was found in the lectin domain. PToVs were divided into two lineages in the HE region, whereas clear lineages were not found in other regions.
Asunto(s)
Heces/virología , Genoma Viral , Infecciones por Torovirus/veterinaria , Torovirus/genética , Torovirus/aislamiento & purificación , Secuenciación Completa del Genoma , Animales , Biología Computacional , Evolución Molecular , Humanos , Japón , Recombinación Genética , Porcinos , Infecciones por Torovirus/virologíaRESUMEN
Porcine torovirus (PToV) is associated with swine gastroenteritis, but its pathogenesis is uncertain because there is limited information regarding PToV due to its difficulty to adapt in vitro. This study has developed a rapid one-step reverse transcription loop-mediated isothermal amplification (RT-LAMP) method for the detection of PToV. A set of four primers specific to six regions within the PToV's highly conserved fragment of the M gene was designed for use with the RT-LAMP assay. The RT-LAMP assay was sensitive with a detection limit of 1 × 10(1)copies/µL, which was 100-fold higher than reverse-transcription PCR. No cross-reaction was observed with other similar viruses. A total of 175 clinical specimens were collected from the Sichuan province, and PToV was detected by the established RT-LAMP assay with a positive rate of 39.2% (69/175). This study developed the first rapid, sensitive, simple, cost-effective and accurate method for the detection of PToV. The results show that the RT-LAMP assay is highly feasible in clinical settings.
Asunto(s)
Técnicas de Amplificación de Ácido Nucleico/métodos , Enfermedades de los Porcinos/virología , Infecciones por Torovirus/veterinaria , Torovirus/aislamiento & purificación , Animales , Reacciones Cruzadas , Cartilla de ADN , Humanos , Límite de Detección , Técnicas de Amplificación de Ácido Nucleico/economía , ARN Viral , Transcripción Reversa , Sensibilidad y Especificidad , Porcinos , Enfermedades de los Porcinos/diagnóstico , Torovirus/genética , Infecciones por Torovirus/diagnóstico , Infecciones por Torovirus/virologíaRESUMEN
BACKGROUND: Bovine coronavirus (BCoV) together with bovine torovirus (BToV), both members of the Coronaviridae family, order Nidovirales are the most common viral enteric pathogens. Although studied separately, their joint occurrence and the molecular diversity in cattle in Croatia have not been investigated. METHODS: A survey is carried out on 101 fecal samples from diarrheic young and adult cattle during the 3-year period from i) one large dairy herd, ii) four small herds and iii) three nasal and paired fecal samples from calves with symptoms of respiratory disease. Samples were submitted to RT-PCR and sequencing for BCoV Nucleocapsid gene, BCoV Spike gene and BToV Spike gene. RESULTS: BCoV was detected in 78.8 % of fecal samples from symptomatic cattle and three nasal and paired fecal samples from calves with respiratory symptoms. BToV was detected in 43.2 % of fecal samples from symptomatic cattle and a fecal sample from calves with respiratory symptoms. Molecular characterisation of those viruses revealed some nucleotide and aminoacid differences in relation to reference strains. CONCLUSIONS: BToV should be regarded as a relevant pathogen for cattle that plays a synergistic role in mixed enteric infections.
Asunto(s)
Enfermedades de los Bovinos/virología , Infecciones por Coronavirus/veterinaria , Coronavirus Bovino/aislamiento & purificación , Infecciones por Torovirus/veterinaria , Torovirus/aislamiento & purificación , Animales , Bovinos , Enfermedades de los Bovinos/epidemiología , Infecciones por Coronavirus/epidemiología , Infecciones por Coronavirus/virología , Coronavirus Bovino/genética , Croacia/epidemiología , ADN Complementario/genética , ADN Viral/genética , Diarrea/epidemiología , Diarrea/veterinaria , Diarrea/virología , Heces/virología , Filogenia , Alineación de Secuencia , Torovirus/genética , Infecciones por Torovirus/epidemiología , Infecciones por Torovirus/virologíaRESUMEN
BACKGROUND: Porcine torovirus (PToV) is a member of the genus Torovirus which is responsible for gastrointestinal disease in both human beings and animals with particular prevalence in youth. Torovirus infections are generally asymptomatic, however, their presence may worsen disease consequences in concurrent infections with other enteric pathogens. METHODS: A total of 872 diarrheic fecal samples from pigs of different ages were collected from 12 districts of Sichuan Province in the southwest of China. RT-PCR was done with PToV S gene specific primers to detect the presence of PToV positive samples. M gene specific primers were used with the PToV positive samples and the genes were sequenced. A phylogenetic tree was constructed based on the M gene nucleotide sequences from the 19 selected novel Sichuan strains and 21 PToV and BToV M gene sequences from GenBank. RESULTS: A total of 331 (37.96%, 331/872) samples were found to be positive for PToV and the highest prevalence was observed in piglets aged from 1 to 3 weeks old. Through phylogenetic inference the 40 PToV M gene containing sequences were placed into two genotypes (I & II). The 19 novel Sichuan strains of genotype I showed strong correlations to two Korean gene sequences (GU-07-56-11 and GU-07-56-22). Amino-acid sequence analysis of the 40 PToV M gene strains revealed that the M gene protein was highly conserved. CONCLUSIONS: This study uncovered the presence of PToV in Sichuan Province, and demonstrated the need for continuous surveillance PToV of epidemiology.
Asunto(s)
Enfermedades de los Porcinos/epidemiología , Enfermedades de los Porcinos/virología , Infecciones por Torovirus/veterinaria , Torovirus/clasificación , Torovirus/genética , Animales , China/epidemiología , Análisis por Conglomerados , Diarrea/epidemiología , Diarrea/veterinaria , Diarrea/virología , Heces/virología , Epidemiología Molecular , Datos de Secuencia Molecular , Filogenia , ARN Viral/genética , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Análisis de Secuencia de ADN , Homología de Secuencia , Porcinos , Torovirus/aislamiento & purificación , Infecciones por Torovirus/epidemiología , Infecciones por Torovirus/virologíaRESUMEN
Bovine torovirus (BToV), a member of the family Coronaviridae, is an established gastrointestinal infectious agent in cattle. In this study, we performed a survey to detect BToV in Turkey between 2009 and 2011 using 235 fecal samples from neonatal calves with diarrhea that were analyzed by the nested reverse transcription (RT) PCR method using primers located in the consensus sequences of the BToV membrane (M) gene. The BToV M gene was detected in 4.7 % (11/235) of the samples using the nested RT-PCR method. The nucleotide sequences of partial M fragments from the BToV isolates, including the newly identified Turkish isolates, showed more than 96 % identity. The result indicates that BToV is one of the pathogens that contribute to neonatal calf diarrhea cases in Turkey.
Asunto(s)
Enfermedades de los Bovinos/virología , Diarrea/veterinaria , Heces/virología , Infecciones por Torovirus/veterinaria , Torovirus/aislamiento & purificación , Animales , Bovinos , Enfermedades de los Bovinos/epidemiología , Diarrea/virología , Filogenia , Torovirus/genética , Infecciones por Torovirus/epidemiología , Infecciones por Torovirus/virología , Turquía/epidemiologíaRESUMEN
In this study, we amplified and sequenced the first genome of porcine torovirus (PToV SH1 strain). The genome was found to be 28,301 bp in length, sharing 79 % identity with Breda virus. It mainly consists of replicase (20,906 bp) and structural genes: spike (4,722 bp), membrane (702 bp), hemagglutinin-esterase (1,284 bp), and nucleocapsid (492 bp). Sequence alignments and structure prediction suggest genetic differences among toroviruses, mainly in NSP1 (papain-like cysteine proteinase domain). Rooted phylogenetic trees were constructed based on the 3C-like proteinase and RNA-dependent RNA polymerase genes. PToV, Berne virus and Breda virus were clustered together, forming a separate branch from white bream virus that was distant from that of the coronaviruses.
Asunto(s)
Genoma Viral , ARN Viral/genética , Análisis de Secuencia de ADN , Torovirus/clasificación , Torovirus/genética , Animales , Análisis por Conglomerados , Heces/virología , Datos de Secuencia Molecular , Filogenia , Homología de Secuencia de Ácido Nucleico , Porcinos , Torovirus/aislamiento & purificación , Proteínas Virales/genéticaRESUMEN
A one-step multiplex reverse transcription (RT)-PCR method was developed for the simultaneous detection of five viruses causing diarrhea in adult cattle: bovine group A rotavirus (GAR), bovine group B rotavirus (GBR), bovine group C rotavirus (GCR), bovine coronavirus (BCV), and bovine torovirus (BToV). The detection limit of the one-step multiplex RT-PCR for GAR, GCR, BCV, and BToV was 10(2), 10(0), 10(1), and 10(2) TCID(50)/ml, respectively, and that for GBR was 10(6) copies/ml. The one-step multiplex RT-PCR with newly designed primers to detect GAR had higher sensitivity than a single RT-PCR with conventional primers, with no false-positive reactions observed for ten other kinds of bovine RNA viruses To assess its field applicability, 59 of 60 fecal samples containing one of these five viruses from all 25 epidemic diarrhea outbreaks in adult cattle were positive in the one-step multiplex RT-PCR assay. Furthermore, using four additional fecal samples containing two viruses (GBR and BCV or BToV), two amplified products of the expected sizes were obtained simultaneously. In contrast, all 80 fecal samples lacking the five target viruses from normal adult cattle were negative in the multiplex assay. Taken together, our results indicate that the one-step multiplex RT-PCR developed here for the detection of GAR, GBR, GCR, BCV, and BToV can be expected to be a useful tool for the rapid and cost-effective diagnosis and surveillance of viral diarrhea in adult cattle.
Asunto(s)
Enfermedades de los Bovinos/diagnóstico , Coronavirus Bovino/aislamiento & purificación , Diarrea/veterinaria , Reacción en Cadena de la Polimerasa Multiplex/métodos , Rotavirus/aislamiento & purificación , Torovirus/aislamiento & purificación , Animales , Bovinos , Enfermedades de los Bovinos/virología , Coronavirus Bovino/clasificación , Coronavirus Bovino/genética , Cartilla de ADN/genética , Diarrea/diagnóstico , Diarrea/virología , Heces/virología , Rotavirus/clasificación , Rotavirus/genética , Torovirus/clasificación , Torovirus/genéticaRESUMEN
Bovine torovirus (BToV) is recognized as an enteric pathogen of calves, but its etiological role in diarrhea and epidemiological characterization in adult cows remain unclear. In 2007-2008, three outbreaks of epidemic diarrhea occurred in adult cows at three dairy farms in Niigata Prefecture, Japan. BToV was the only enteric pathogen detected in these outbreaks, as determined by electron microscopy, reverse transcription-PCR, bacteria and parasite tests of fecal samples, and antibody tests with paired sera. The epidemiological features of the three outbreaks were similar to those of bovine coronavirus infection, except for the absence of bloody diarrhea, with diarrhea spreading among most adult cows, but not in calves, within several days and diarrhea lasting for 3-5 days with anorexia. Decreased milk production and mild respiratory symptoms were also observed in two of the outbreaks. Nucleotide sequence analysis of the BToV nucleocapsid, spike, and hemagglutinin-esterase (HE) genes revealed a close relatedness among the detected BToV strains from each outbreak and those of Japanese BToV strain Aichi/2004. Furthermore, we isolated a BToV strain, designated Niigata (TC), from a fecal sample using a human rectal tumor cell line. Sequence analysis of this isolate and Aichi/2004 indicated that both strains have truncated HE genes with deletions in the 3' region that occurred through cell culture-adaptation. The short projections that are believed to be formed by the HE protein on virus particles were not observed in these cultured strains by electron microscopy. Taken together, these results suggest that BToV causes epidemic diarrhea in adult cows and should be included in the differential diagnosis of diarrhea in adult cows. In addition, our findings indicate that the HE protein of BToV may not be necessary for viral replication.
Asunto(s)
Enfermedades de los Bovinos/epidemiología , Enfermedades de los Bovinos/virología , Diarrea/veterinaria , Brotes de Enfermedades , Infecciones por Torovirus/veterinaria , Torovirus/aislamiento & purificación , Animales , Bovinos , Enfermedades de los Bovinos/patología , Línea Celular , Análisis por Conglomerados , Diarrea/epidemiología , Humanos , Japón/epidemiología , Microscopía Electrónica , Datos de Secuencia Molecular , Filogenia , ARN Viral/genética , Análisis de Secuencia de ADN , Infecciones por Torovirus/epidemiología , Infecciones por Torovirus/patología , Proteínas Virales/genética , Virión/ultraestructura , Cultivo de VirusRESUMEN
The ssRNA+ family Coronaviridae includes two subfamilies prototyped by coronaviruses and toroviruses that cause respiratory and enteric infections. To facilitate the identification of new distantly related members of the family Coronaviridae, we have developed a molecular assay with broad specificity. The consensus-degenerated hybrid oligonucleotide primer (CODEHOP) strategy was modified to design primers targeting the most conserved motifs in the RNA-dependent RNA polymerase locus. They were evaluated initially on RNA templates from virus-infected cells using a two-step RT-PCR protocol that was further advanced to a one-step assay. The sensitivity of the assay ranged from 10(2) to 10(6) and from 10(5) to 10(9) RNA copy numbers for individual corona-/torovirus templates when tested, respectively, with and without an excess of RNA from human cells. This primer set compared to that designed according to the original CODEHOP rules showed 10-10(3) folds greater sensitivity for 5 of the 6 evaluated corona-/torovirus templates. It detected 57% (32 of 56) of the respiratory specimens positive for 4 human coronaviruses, as well as stool specimens positive for a bovine torovirus. The high sensitivity and broad virus range of this assay makes it suitable for screening biological specimens in search for new viruses of the family Coronaviridae.
Asunto(s)
Coronavirus/aislamiento & purificación , Cartilla de ADN/genética , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa/métodos , Torovirus/aislamiento & purificación , Secuencia de Aminoácidos , Animales , Bovinos , Línea Celular , Secuencia Conservada , Coronavirus/clasificación , Coronavirus/genética , Infecciones por Coronavirus/diagnóstico , Infecciones por Coronavirus/virología , Cartilla de ADN/metabolismo , Humanos , Datos de Secuencia Molecular , Filogenia , ARN Viral/genética , Sensibilidad y Especificidad , Alineación de Secuencia , Torovirus/clasificación , Torovirus/genética , Infecciones por Torovirus/diagnóstico , Infecciones por Torovirus/virología , Cultivo de VirusRESUMEN
Toroviruses (ToVs) are a group of emerging viruses that cause gastroenteritis in domestic animals and humans. Currently, methods such as real-time reverse transcription-polymerase chain reaction (real-time RT-PCR) have not yet been developed for the rapid detection and quantitation of bovine (BToV) and porcine (PToV) toroviruses. Using BToV and PToV RNA standards generated by in vitro transcription, the detection limit of the SYBR Green real-time RT-PCR assay was 2.54 x 10(2) BToV and 2.17 x 10(3) PToV copies/reaction (correlation coefficiency=0.99 and 0.97, respectively), whereas those of RT-PCR and nested PCR were 2.54 x 10(5) and 2.54 x 10(4) (BToV) and 2.17 x 10(7) and 2.17 x 10(5) (PToV) cRNA viral copies/reaction, respectively. Archived diarrhea specimens of calves (n=121) and piglets (n=86) were subjected to RT-PCR, nested PCR and SYBR Green real-time RT-PCR. By conventional RT-PCR, 1 (0.8%) bovine and 7 (8.1%) porcine samples tested positive to BToV and PToV, respectively. With nested PCR, 13 (10.7%) bovine and 17 (19.8%) porcine samples tested positive. SYBR Green real-time RT-PCR assay detected BToV and PToV in 22 of 121 (18.2%) bovine and 31 of 86 (36.0%) porcine samples. These results indicate that SYBR Green real-time RT-PCR (P<0.05) is a more sensitive assay, which can be reproduced as a reliable, sensitive, and rapid tool for the detection and quantitation of toroviruses.
Asunto(s)
Colorantes Fluorescentes/metabolismo , Compuestos Orgánicos/metabolismo , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa/métodos , Infecciones por Torovirus/veterinaria , Torovirus/aislamiento & purificación , Animales , Benzotiazoles , Bovinos , Cartilla de ADN/genética , Diaminas , Diarrea/virología , Heces/virología , Datos de Secuencia Molecular , Quinolinas , ARN Viral/genética , Sensibilidad y Especificidad , Análisis de Secuencia de ADN , Coloración y Etiquetado/métodos , Porcinos , Infecciones por Torovirus/diagnósticoRESUMEN
Torovirus, a member of the Coronaviridae family, is a gastrointestinal infectious agent that has been identified in humans, cattle, pigs, and equines. Toroviruses, except equine torovirus, are difficult to propagate in cell culture; indeed, to date, only the Aichi/2004 strain of bovine torovirus (BToV) has been isolated among the human, bovine, and porcine toroviruses. In the present study, four cytopathogenic BToVs were isolated from diarrheal feces of the cattle using the HRT-18 cell line, and their genetic and antigenic properties were compared. The cytopathogenic features of BToV isolates in HRT-18 cells were similar to those of the Aichi/2004 strain. However, none of the isolates showed cytopathogenic effects in the HRT-18 cells of different origin, suggesting that one significant factor contributing to the cytopathogenicity of BToV depends on properties of the HRT-18 cells themselves. All BToVs isolated were able to agglutinate mouse, but not chicken, erythrocytes, while they lacked receptor-destroying enzyme activity. Analysis of the N terminus of the spike gene showed that three isolates, but not the Gifu-2007TI/E strain, were phylogenetically located in cluster 1 and its analogs and revealed high cross-reactivity with each other, as demonstrated by neutralization (NT) and hemagglutination inhibition (HI) assays. The Gifu-2007TI/E strain was classified close to cluster 2 and exhibited relatively low cross-reactivity with these viruses; however, the difference was not sufficient to classify BToVs into serotypes, suggesting that at least two subtypes distinguishable by the structure of the N terminus of the spike gene and that both NT and HI tests may be exist.
Asunto(s)
Enfermedades de los Bovinos/virología , Diarrea/veterinaria , Infecciones por Torovirus/veterinaria , Torovirus/clasificación , Torovirus/aislamiento & purificación , Animales , Bovinos , Línea Celular Tumoral , Pollos , Análisis por Conglomerados , Efecto Citopatogénico Viral , Diarrea/virología , Eritrocitos/virología , Genotipo , Hemaglutinación , Humanos , Japón , Ratones , Datos de Secuencia Molecular , Filogenia , Análisis de Secuencia de ADN , Torovirus/genética , Torovirus/inmunología , Infecciones por Torovirus/virologíaRESUMEN
This study examined the prevalence and genetic diversity of the porcine torovirus (PToV) in Korea. Of 295 samples, 19 (6.4%) samples tested positive for PToVs by RT-PCR. A low nucleotide sequence identity of the partial S gene was detected among the Korean PToVs (73.5%) and between the Korean and European PToVs (74.0%). Phylogenetic analysis of the spike and nucleocapsid genes showed that the Korean PToVs form distinct branches with clusters corresponding to the farm of origin, which were separate from the other known foreign PToVs. These findings suggest that genetically diverse Korean PToV strains cause sporadic infections in Korea.
Asunto(s)
Enfermedades de los Porcinos/epidemiología , Enfermedades de los Porcinos/virología , Infecciones por Torovirus/veterinaria , Torovirus/clasificación , Torovirus/genética , Animales , Análisis por Conglomerados , Corea (Geográfico) , Filogenia , Prevalencia , ARN Viral/genética , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Análisis de Secuencia de ADN , Homología de Secuencia de Ácido Nucleico , Porcinos , Torovirus/aislamiento & purificación , Infecciones por Torovirus/epidemiología , Infecciones por Torovirus/virologíaRESUMEN
Toroviruses are enteric viruses belonging to the Nidovirales order that infect different animal species and humans. The lack of "in vitro" culture systems for toroviruses, except for the prototype Berne virus or BEV, isolated originally from an infected horse, has hampered their study and the development of diagnostic assays. This report describes a real time RT-PCR method to detect porcine torovirus (PToV) RNA in clinical fecal samples using primers corresponding to the gene coding for the nucleocapsid protein which are conserved in all PToV strains known to date. This method can be used to determine viral loads allowing quantitation within a range between 10(1) and 10(8) genomic units per reaction tube. The assay was evaluated with 48 rectal swabs from piglets from a Spanish farm. Nineteen out of 48 animals were shedding virus at the time of sample collection, indicating a high incidence of PToV infection in this farm. This is the first report showing the presence of PToV in Spain. The real time RT-PCR assay described in this report provides a rapid, highly sensitive, specific and reliable detection and quantitation method enabling future PToV epidemiological studies.
Asunto(s)
Reacción en Cadena de la Polimerasa de Transcriptasa Inversa/métodos , Enfermedades de los Porcinos/diagnóstico , Porcinos/virología , Infecciones por Torovirus/veterinaria , Torovirus/aislamiento & purificación , Animales , Cartilla de ADN/genética , Heces/virología , Proteínas de la Nucleocápside/genética , ARN Viral/genética , ARN Viral/aislamiento & purificación , España , Enfermedades de los Porcinos/virología , Factores de Tiempo , Infecciones por Torovirus/diagnóstico , Carga Viral/métodos , Esparcimiento de VirusRESUMEN
Bovine torovirus (BToV), a member of the Coronaviridae family, is a causative agent of diarrhea in cattle, but it may also possess tropism for the respiratory tract. However, no surveys concerning with the relation between respiratory symptoms and the detection of BToV have been conducted in wide range. Among 311 nasal samples, BToV gene products were detected in seven samples (rBToV-1 to -7) derived only from calves with respiratory symptoms, suggesting that BToV may be a predisposing factor and/or causative agent for bovine respiratory disease. Regarding the degree of similarity between the spike and hemagglutinin-esterase coding regions, the rBToVs showed over 90.8% similarity with one another and 73.5-99.0% similarity with fecal tract-derived BToVs. rBToV-1, -2, and -3 were identical despite their being collected during different seasons; in comparison, rBToV-4 and -5 were distinct despite the fact that they were collected from the same herd, suggesting the existence of diversity among domestic rBToVs. One animal with a BToV-positive nasal sample also shed the virus in its feces, suggesting dual tropisms for BToV.
Asunto(s)
Enfermedades de los Bovinos/virología , Infecciones del Sistema Respiratorio/veterinaria , Infecciones por Torovirus/veterinaria , Torovirus/aislamiento & purificación , Animales , Bovinos , Femenino , Hemaglutininas Virales/química , Hemaglutininas Virales/genética , Masculino , Mucosa Nasal/virología , Proteínas de la Nucleocápside/química , Proteínas de la Nucleocápside/genética , Filogenia , ARN Viral/química , ARN Viral/genética , Infecciones del Sistema Respiratorio/virología , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa/veterinaria , Torovirus/genética , Infecciones por Torovirus/virología , Proteínas Virales de Fusión/química , Proteínas Virales de Fusión/genéticaRESUMEN
A cytopathogenic virus (designated the Aichi/2004 strain) was isolated in a human rectal adenocarcinoma cell line (HRT-18) from the ileum contents of a calf with diarrhea. Oval and elongated particles, approximately 100 to 170 nm in diameter, with club-shaped projections were seen in the infected culture supernatant, and torovirus-like (tubular and torus nucleocapsid) structures were seen in the infected cells by electron microscopy. An antiserum against bovine torovirus (BToV) reacted with the infected cells by immunofluorescence and neutralized the isolate. However, antisera against bovine coronavirus (BCV) failed to react with the infected cells by immunofluorescence or did not neutralize the isolate. Further, the isolate was positive for BToV by reverse transcription-PCR (RT-PCR) targeting fragments of the nucleocapsid (N), membrane (M), and spike (S) genes. Comparison of the nucleotide sequences of the PCR products with those of the published N, M, and S genes (476 to 497, 672, and 687 to 690 nucleotides, respectively) of toroviruses showed high sequence identities (up to 99.4%, 98.7%, and 94.9% for the N, M, and S genes, respectively) between the isolate and BToVs. In contrast, the isolate was negative for BCV by RT-PCR. In a serological survey of serum samples from 355 calves at 33 farms, 92% of calves were positive for neutralizing antibodies to the isolate. These results indicate that the isolate in this study was BToV and that BToV infection might be common in cattle in Japan. To our knowledge, this is the first isolation of BToV in tissue culture.