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1.
J Med Genet ; 45(11): 689-94, 2008 Nov.
Article in English | MEDLINE | ID: mdl-18978332

ABSTRACT

Hereditary paraganglioma (PGL) is characterised by genetic predisposition to the development of highly vascular tumours of the paraganglionic tissues and caused by germ line inactivating mutations in the SDHB, SDHC and SDHD subunits of mitochondrial succinate dehydrogenase enzyme complex (SDH; mitochondrial complex II). Recent studies have demonstrated that SDH gene mutations in germ line occur in at least 11% of non-familial head and neck paragangliomas, 8% of non-familial pheochromocytomas, 28% of malignant pheochromocytomas and 33% of extra-adrenal pheochromocytomas. An increasing amount of data suggest that PGL mutations lead to constitutive activation of hypoxia signalling pathways. Genetic and structural models suggest that SDH mutations cause an accumulation of succinate and reactive oxygen species (ROS) which might act as downstream signalling molecules that activate hypoxia inducible pathways. However, many fundamental aspects of PGL pathogenesis, including the mechanism of ROS accumulation, the imprinted transmission pattern of SDHD mutations, and the precise role of SDH in regulation of oxygen homeostasis, remain poorly understood.


Subject(s)
Paraganglioma/genetics , Paraganglioma/physiopathology , Succinate Dehydrogenase/genetics , Adrenal Gland Neoplasms/genetics , Adrenal Gland Neoplasms/physiopathology , Germ-Line Mutation , Head and Neck Neoplasms/genetics , Head and Neck Neoplasms/physiopathology , Humans , Succinate Dehydrogenase/metabolism
3.
J Med Genet ; 39(9): 617-22, 2002 Sep.
Article in English | MEDLINE | ID: mdl-12205103

ABSTRACT

Paragangliomas are highly vascularised and often heritable tumours derived from paraganglia, a diffuse neuroendocrine system dispersed from skull base to the pelvic floor. The carotid body, a small oxygen sensing organ located at the bifurcation of the carotid artery in the head and neck and the adrenal medulla in the abdomen, are the most common tumour sites. It now appears that mutations in SDHB, SDHC, and SDHD, which encode subunits of mitochondrial complex II (succinate dehydrogenase; succinate-ubiquinone oxidoreductase), are responsible for the majority of familial paragangliomas and also for a significant fraction of non-familial tumours. Germline mutations in complex II genes are associated with the development of paragangliomas in diverse anatomical locations, including phaeochromocytomas, a finding that has important implications for the clinical management of patients and genetic counselling of families. Consequently, patients with a paraganglioma tumour, including phaeochromocytoma, and a complex II germline mutation should be diagnosed with hereditary paraganglioma, regardless of family history, anatomical location, or multiplicity of tumours. This short review attempts to bring together relevant genetic data on paragangliomas with a particular emphasis on head and neck paragangliomas and phaeochromocytomas.


Subject(s)
Paraganglia, Nonchromaffin/pathology , Paraganglioma/genetics , Adrenal Gland Neoplasms/genetics , Electron Transport Complex II , Head and Neck Neoplasms/genetics , Humans , Multienzyme Complexes/genetics , Mutation , Oxidoreductases/genetics , Paraganglioma/pathology , Succinate Dehydrogenase/genetics
4.
J Med Genet ; 39(3): 178-83, 2002 Mar.
Article in English | MEDLINE | ID: mdl-11897817

ABSTRACT

BACKGROUND: Paragangliomas are rare and highly heritable tumours of neuroectodermal origin that often develop in the head and neck region. Germline mutations in the mitochondrial complex II genes, SDHB, SDHC, and SDHD, cause hereditary paraganglioma (PGL). METHODS: We assessed the frequency of SDHB, SDHC, and SDHD gene mutations by PCR amplification and sequencing in a set of head and neck paraganglioma patients who were previously managed in two otolaryngology clinics in the USA. RESULTS: Fifty-five subjects were grouped into 10 families and 37 non-familial cases. Five of the non-familial cases had multiple tumours. Germline SDHD mutations were identified in five of 10 (50%) familial and two of 37 ( approximately 5%) non-familial cases. R38X, P81L, H102L, Q109X, and L128fsX134 mutations were identified in the familial cases and P81L was identified in the non-familial cases. Both non-familial cases had multiple tumours. P81L and R38X mutations have previously been reported in other PGL families and P81L was suggested as a founder mutation. Allelic analyses of different chromosomes carrying these mutations did not show common disease haplotypes, strongly suggesting that R38X and P81L are potentially recurrent mutations. Germline SDHB mutations were identified in two of 10 (20%) familial and one of 33 ( approximately 3%) non-familial cases. P131R and M71fsX80 were identified in the familial cases and Q59X was identified in the one non-familial case. The non-familial case had a solitary tumour. No mutations could be identified in the SDHC gene in the remaining four families and 20 sporadic cases. CONCLUSIONS: Mutations in SDHD are the leading cause of head and neck paragangliomas in this clinic patient series. SDHD and SDHB mutations account for 70% of familial cases and approximately 8% of non-familial cases. These results also suggest that the commonness of the SDHD P81L mutation in North America is the result of both a founder effect and recurrent mutations.


Subject(s)
Gene Frequency/genetics , Germ-Line Mutation/genetics , Head and Neck Neoplasms/genetics , Multienzyme Complexes/genetics , Oxidoreductases/genetics , Paraganglioma/genetics , Succinate Dehydrogenase/genetics , Alleles , DNA Mutational Analysis , Electron Transport Complex II , Exons/genetics , Female , Founder Effect , Genetic Testing , Genotype , Haplotypes , Humans , Male , Mutation, Missense/genetics , Pedigree , Polymerase Chain Reaction , Prevalence , United States
5.
J Mol Med (Berl) ; 79(9): 495-503, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11692162

ABSTRACT

This review presents our current knowledge on the genetic and phenotypic aspects of mitochondrial complex II gene defects. The mutations of the complex II subunits cause two strikingly different group of disorders, revealing a phenotypic dichotomy. Genetic disorders of the mitochondrial respiratory chain are often characterized by hypotonia, growth retardation, cardiomyopathy, myopathy, neuropathy, organ failure, and metabolic derangement. These disorders are transmitted through maternal lineage if the defective gene is located in the mitochondrial genome or may follow a Mendelian pattern if it is in the nucleus. Mitochondrial complex II (succinate:ubiquinone oxidoreductase) is the smallest complex in the respiratory chain and is composed of four subunits encoded by nuclear genes SDHA, SDHB, SDHC, and SDHD. Complex II oxidizes succinate to fumarate in the Krebs cycle and is involved in the mitochondrial electron transport chain. SDHA and SDHB encode the flavoprotein and iron-sulfur proteins, respectively, and SDHC and SDHD encode the two hydrophobic membrane-spanning subunits. While mutations in SDHA display a phenotype resembling other mitochondrial and Krebs cycle gene defects, those in SDHB, SDHC and SDHD cause hereditary paraganglioma. Paraganglioma is characterized by slow-growing vascular tumors of the paraganglionic tissue (i.e., adrenal and extra-adrenal paragangliomas, including those in the head and neck, mediastinum, abdomen, and pheochromocytomas). Paraganglioma caused by SDHD mutations occurs exclusively after paternal transmission, suggesting that genomic imprinting influences gene expression. Association of a mitochondrial gene defect with tumorigenesis expands the phenotypic spectrum of mitochondrial diseases and adds genomic imprinting as a new transmission mode in mitochondrial genetics. The phenotypic features of complex II gene mutations suggest that whereas the catalytic subunit SDHA mutations may compromise the Krebs cycle, those in other structural subunits may affect oxygen sensing and signaling.


Subject(s)
Mitochondrial Diseases/genetics , Multienzyme Complexes/genetics , Multienzyme Complexes/metabolism , Oxidoreductases/genetics , Oxidoreductases/metabolism , Succinate Dehydrogenase/genetics , Succinate Dehydrogenase/metabolism , Cell Nucleus/metabolism , Chromosomes, Human, Pair 11 , Citric Acid Cycle , DNA, Complementary/metabolism , Electron Transport , Electron Transport Complex II , Genomic Imprinting , Humans , Models, Biological , Multienzyme Complexes/deficiency , Mutation , Oxidoreductases/deficiency , Phenotype , Succinate Dehydrogenase/deficiency
6.
Otolaryngol Clin North Am ; 34(5): 863-79, vi, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11557444

ABSTRACT

Genetic studies of hereditary paraganglioma tumors could increase the understanding of the biology of these fascinating tumors, with important clinical implications for diagnosis and treatment. This article focuses on the genetics of paraganglioma tumors, with limited reference to their general morphologic and clinical aspects. The paraganglioma tumor phenotype is defined. The genetic and physical mapping studies recently performed are summarized--studies that eventually led to the discovery of the gene for hereditary paraganglioma type 1 (PGL1). Finally, future directions stemming from the PGL gene discovery are described.


Subject(s)
Genetic Predisposition to Disease/epidemiology , Head and Neck Neoplasms/genetics , Paraganglioma/genetics , Female , Genetic Testing , Head and Neck Neoplasms/epidemiology , Humans , Incidence , Male , Paraganglioma/epidemiology , Pedigree , Risk Assessment , Sensitivity and Specificity
7.
Hum Genet ; 109(2): 216-23, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11511928

ABSTRACT

Constitutional chromosomal translocations are relatively common causes of human morbidity, yet the DNA double-strand break (DSB) repair mechanisms that generate them are incompletely understood. We cloned, sequenced and analyzed the breakpoint junctions of a familial constitutional reciprocal translocation t(9;11)(p24;q23). Within the 10-kb region flanking the breakpoints, chromosome 11 had 25% repeat elements, whereas chromosome 9 had 98% repeats, 95% of which were L1-type LINE elements. The breakpoints occurred within an L1-type repeat element at 9p24 and at the 3'-end of an Alu sequence at 11q23. At the breakpoint junction of derivative chromosome 9, we discovered an unusually large 41-bp insertion, which showed 100% identity to 12S mitochondrial DNA (mtDNA) between nucleotides 896 and 936 of the mtDNA sequence. Analysis of the human genome failed to show the preexistence of the inserted sequence at normal chromosomes 9 and 11 breakpoint junctions or elsewhere in the genome, strongly suggesting that the insertion was derived from human mtDNA and captured into the junction during the DSB repair process. To our knowledge, these findings represent the first observation of spontaneous germ line insertion of modern human mtDNA sequences and suggest that DSB repair may play a role in inter-organellar gene transfer in vivo. Our findings also provide evidence for a previously unrecognized insertional mechanism in human, by which non-mobile extra-chromosomal fragments can be inserted into the genome at DSB repair junctions.


Subject(s)
Chromosome Breakage/genetics , Chromosomes, Human, Pair 9/genetics , DNA, Mitochondrial/genetics , Translocation, Genetic , Base Sequence , Chromosome Mapping/methods , Chromosome Segregation , Chromosomes, Artificial, Bacterial , Chromosomes, Human, Pair 11/genetics , Cloning, Molecular , DNA Primers/genetics , Female , Gene Rearrangement , Genetic Testing , Humans , Male , Molecular Sequence Data , Pedigree , Polymerase Chain Reaction , Polymorphism, Single Nucleotide , Sequence Homology, Nucleic Acid
8.
Genes Chromosomes Cancer ; 31(3): 255-63, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11391796

ABSTRACT

Paraganglioma (PGL) is a rare disorder characterized by tumors of the head and neck region. Between 10% and 50% of cases of PGL are familial, and the disease is autosomal dominant and subject to age-dependent penetrance and imprinting. The paraganglioma gene (PGL1) has been mapped to 11q22.3-q23, and recently germline mutations in the SDHD gene have been identified. The SDHD region contains another gene, DPP2/TIMM8B, the homolog of which causes dystonia and deafness seen in Mohr-Tranebjaerg syndrome. Using four PGL pedigrees, two of which exhibit coinheritance of PGL and sensorineural hearing loss or tinnitus, analysis of 14 microsatellite markers provided support for linkage to the PGL1 locus. Sequence analysis identified novel mutations in exon 1 and exon 3 of the SDHD gene, including a novel two base pair deletion in exon 3 creating a premature stop codon at position 67; a novel three base pair deletion in exon 3 resulting in the loss of Tyr-93; a missense mutation in exon 3 resulting in the substitution of Leu-81 for Pro-81; and a novel G-to-C substitution in exon 1 resulting in the substitution of Met-1 for Ile-1. No base changes were detected in the DPP2/TIMM8B gene. There was no apparent loss of heterozygosity at the site of the SDHD mutations. However, RT-PCR analysis of tumor samples showed monoallelic expression of the mutant (paternal) allele as expected for imprinting. This has not previously been shown for this disorder. The inheritance and expression of the SDHD gene is consistent with the PGL1 gene being subject to genomic imprinting.


Subject(s)
Carotid Body Tumor/genetics , Hearing Loss, Sensorineural/genetics , Membrane Transport Proteins , Multienzyme Complexes/genetics , Mutation/genetics , Oxidoreductases/genetics , Succinate Dehydrogenase/genetics , Adolescent , Carotid Body Tumor/enzymology , Child , Chromosomes, Human, Pair 11/genetics , Electron Transport Complex II , Female , Gene Expression Regulation, Neoplastic/genetics , Genetic Linkage/genetics , Genetic Markers , Haplotypes/genetics , Hearing Loss, Sensorineural/enzymology , Humans , Intracellular Membranes/enzymology , Male , Middle Aged , Mitochondria/enzymology , Mitochondria/genetics , Mitochondrial Precursor Protein Import Complex Proteins , Pedigree , Peptidyl Transferases/genetics , Proteins/genetics , Tinnitus/genetics
9.
Genes Chromosomes Cancer ; 31(3): 274-81, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11391798

ABSTRACT

Hereditary paragangliomas or glomus tumors are usually benign slow-growing tumors in the head and neck region. The inheritance pattern of hereditary paraganglioma is autosomal dominant with imprinting. Recently, we have identified the SDHD gene encoding subunit D of the mitochondrial respiratory chain complex II as one of the genes involved in hereditary paragangliomas. Here, we demonstrate that two founder mutations, Asp92Tyr and Leu139Pro, are responsible for paragangliomas in 24 and 6 of the 32 independently ascertained Dutch paraganglioma families, respectively. These two mutations were also detected among 20 of 55 isolated patients. Ten of the isolated patients had multiple paragangliomas, and in eight of these SDHD germline mutations were found, indicating that multicentricity is a strong predictive factor for the hereditary nature of the disorder in isolated patients. In addition, we demonstrate that the maternally derived wild-type SDHD allele is lost in tumors from mutation-carrying patients, indicating that SDHD functions as a tumor suppressor gene.


Subject(s)
Founder Effect , Head and Neck Neoplasms/enzymology , Head and Neck Neoplasms/genetics , Multienzyme Complexes/genetics , Mutation/genetics , Oxidoreductases/genetics , Paraganglioma/enzymology , Paraganglioma/genetics , Succinate Dehydrogenase/genetics , DNA Mutational Analysis , Electron Transport Complex II , Genetic Heterogeneity , Humans , Loss of Heterozygosity/genetics
10.
Eur J Hum Genet ; 9(2): 121-9, 2001 Feb.
Article in English | MEDLINE | ID: mdl-11313745

ABSTRACT

Chromosomal region 11q22-q23 is a frequent target for deletion during the development of many solid tumour types, including breast, ovary, cervix, stomach, bladder carcinomas and melanoma. One of the most commonly deleted subregions contains the SDHD gene, which encodes the small subunit of cytochrome b (cybS) in mitochondrial complex II (succinate-ubiquinone oxidoreductase). Germline mutations in SDHD cause hereditary paraganglioma type 1 (PGL1), and suggest a tumour suppressor role for cybS. We present a high-resolution physical map spanning SDHD, covered by 19 YACs and 20 BACs. An approximate 1.1-Mb gene-rich region around SDHD is spanned by a complete BAC contig. Twenty-six new STSs are developed from the BAC clone ends. In addition to the discovery and characterisation of 15 new simple tandem repeat polymorphisms, we provide integrated positional information for 33 ESTs and known genes, including KIAA1391, POU2AF1 (OBF1), PPP2R1B, CRYAB, HSPB2, DLAT, IL-18, PTPS, KIAA0781 and KAIA4591, which is mapped by NotI site cloning. We describe full-length transcript sequence for PPP2R1B, encoding the protein phosphatase 2A regulatory subunit A beta isoform. We also discover a processed pseudogene for USA-CYP, a cyclophilin associated with U4/U6 snRPNs, and a novel gene, DDP2, encoding a mitochondrial protein similar to the X-linked deafness-dystonia protein, which is juxtaposed 5'-to-5' to SDHD. This map will help assess this gene-rich region in PGL and in other common tumours.


Subject(s)
Chromosome Mapping , Chromosomes, Human, Pair 11/genetics , Genes, Tumor Suppressor , Multienzyme Complexes/genetics , Oxidoreductases/genetics , Succinate Dehydrogenase/genetics , 3' Untranslated Regions/genetics , Base Sequence , Chromosomes, Artificial, Bacterial/genetics , Chromosomes, Artificial, Yeast/genetics , Cloning, Molecular , Cytochrome b Group/chemistry , Cytochrome b Group/genetics , Electron Transport Complex II , Humans , In Situ Hybridization, Fluorescence , Loss of Heterozygosity , Molecular Sequence Data , Neoplasms/genetics , Phosphoprotein Phosphatases/genetics , Polymorphism, Genetic , Polymorphism, Single Nucleotide , Protein Phosphatase 2 , Restriction Mapping , Sequence Deletion , Sequence Tagged Sites
11.
Laryngoscope ; 111(10): 1822-7, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11801952

ABSTRACT

OBJECTIVE/HYPOTHESIS: To determine the heritable proportion of paraganglioma (PGL) and identify clinical features associated with heritable PGL. STUDY DESIGN: Patients diagnosed with head and neck PGLs, identified retrospectively through clinical otolaryngology practices and/or participation in previous PGL research studies, were given a medical and family history questionnaire. METHODS: Questionnaire information was used to classify participants as having "heritable" or "non-heritable" cases of PGL. Classification of the participants identified through otolaryngology clinics was used to estimate the heritable proportion of PGL. Statistical analysis was performed to identify significant differences in the clinical characteristics of the heritable versus non-heritable groups. RESULTS: Among the otolaryngology clinic population, 35% were classified as having heritable PGL. Individuals with heritable PGL were younger on average than those with non-heritable PGL. The majority of non-heritable participants were female, but there was an equal gender ratio among the heritable participants. Individuals diagnosed with a carotid body tumor (CBT) were 5.8 times more likely to be classified as heritable than those diagnosed with PGL at other anatomic locations. CONCLUSIONS: Approximately 35% of individuals who present to an otolaryngologist with a head and neck PGL have inherited a predisposition for this growth. Among individuals diagnosed with head and neck PGL, those diagnosed with CBT are 5.8 times more likely to have an inherited predisposition than those diagnosed with PGL at other anatomic locations.


Subject(s)
Otorhinolaryngologic Neoplasms/genetics , Paraganglioma/genetics , Adult , Aged , Aged, 80 and over , Female , Genetic Predisposition to Disease/genetics , Humans , Male , Middle Aged , Otorhinolaryngologic Neoplasms/diagnosis , Paraganglioma/diagnosis , Pedigree , Risk
12.
Laryngoscope ; 110(7): 1225-9, 2000 Jul.
Article in English | MEDLINE | ID: mdl-10892701

ABSTRACT

OBJECTIVES: In the management of two related patients with multicentric glomus jugulare tumors, given the incidence of 1:30,000 with approximately 20% familial cases, our objective was to review the genetic characteristics and inheritance patterns of these tumors and to determine what molecular genetic screening possibilities exist for the phenotypically normal family members. In addition, our aim was to review the incidence of various multicentric paraganglioma (PGL) tumor location combinations. METHODS: Molecular genetic linkage analysis testing was performed on the 2 patients and 14 other unaffected family members. We report the results of this screening and review the literature on the incidence and genetics of paragangliomas. RESULTS: The inheritance pattern in the literature demonstrates autosomal dominant transmission with maternal imprinting (inactivation). The proclivity for multicentric origin increases to 26% in familial cases, as reflected in our patients. In addition to the two patients, four unaffected family members demonstrated the presence of the disease haplotype at chromosome band 11q23, which indicates a very high likelihood of developing a paraganglioma, given the highly penetrant nature of the disease. CONCLUSIONS: It is clear that the familial PGL gene locus is situated at chromosome 11q23. The gene itself and its exact degree of penetrance, however, still await identification. Since early detection of paragangliomas reduces the incidence of morbidity and mortality, genotypic analysis as a screening tool in families of affected patients should play a front-line diagnostic role, leading to more timely and cost-effective patient management.


Subject(s)
Glomus Jugulare Tumor/diagnosis , Glomus Jugulare Tumor/genetics , Paraganglioma/diagnosis , Paraganglioma/genetics , Chromosomes, Human, Pair 11/genetics , Gene Expression/genetics , Genetic Linkage , Haplotypes/genetics , Humans
13.
Science ; 287(5454): 848-51, 2000 Feb 04.
Article in English | MEDLINE | ID: mdl-10657297

ABSTRACT

Hereditary paraganglioma (PGL) is characterized by the development of benign, vascularized tumors in the head and neck. The most common tumor site is the carotid body (CB), a chemoreceptive organ that senses oxygen levels in the blood. Analysis of families carrying the PGL1 gene, described here, revealed germ line mutations in the SDHD gene on chromosome 11q23. SDHD encodes a mitochondrial respiratory chain protein-the small subunit of cytochrome b in succinate-ubiquinone oxidoreductase (cybS). In contrast to expectations based on the inheritance pattern of PGL, the SDHD gene showed no evidence of imprinting. These findings indicate that mitochondria play an important role in the pathogenesis of certain tumors and that cybS plays a role in normal CB physiology.


Subject(s)
Carotid Body Tumor/genetics , Cytochrome b Group/genetics , Germ-Line Mutation , Multienzyme Complexes/genetics , Oxidoreductases/genetics , Paraganglioma/genetics , Succinate Dehydrogenase/genetics , Alleles , Amino Acid Sequence , Carotid Body/metabolism , Carotid Body Tumor/metabolism , Chromosomes, Human, Pair 11/genetics , Cytochrome b Group/chemistry , Cytochrome b Group/metabolism , Electron Transport Complex II , Genetic Linkage , Genomic Imprinting , Haplotypes , Heterozygote , Humans , Loss of Heterozygosity , Mitochondria/metabolism , Molecular Sequence Data , Multienzyme Complexes/chemistry , Multienzyme Complexes/metabolism , Mutation, Missense , Oxidoreductases/chemistry , Oxidoreductases/metabolism , Paraganglioma/metabolism , Polymorphism, Single-Stranded Conformational , Succinate Dehydrogenase/chemistry , Succinate Dehydrogenase/metabolism
14.
Gene ; 236(1): 21-4, 1999 Aug 05.
Article in English | MEDLINE | ID: mdl-10433962

ABSTRACT

The human PLZF (promyelocytic leukaemia zinc finger) gene encodes a Krüppel-like zinc finger protein, which was identified via the reciprocal translocation t(11;17)(q23;q21) fusing it to the retinoic acid receptor alpha (RARalpha) gene in promyelocytic leukaemia. To determine its complete genomic organisation, we constructed a cosmid-map fully containing the hPLZF gene. The gene has seven exons, including a novel 5' untranslated exon, varying in size from 87 to 1358bp and spans at least 120kb. Flanking intronic sequences were identified and all splice acceptor and donor sites conformed to the gt/ag rule. Five polymorphic markers could be fine located in its vicinity. These data will facilitate mutation analysis of hPLZF in t(11;17) leukaemia cases, as well as assist mapping and loss-of-heterozygosity analysis. Here we have tested hPLZF as a possible candidate for the PGL1 locus involved in hereditary head and neck paragangliomas. However, mutation analysis revealed no aberration in 12 paraganglioma patients from different families.


Subject(s)
DNA-Binding Proteins/genetics , Transcription Factors/genetics , Base Sequence , Chromosomes, Artificial, Yeast , Chromosomes, Human, Pair 11 , Cosmids , Exons , Genetic Markers , Germ-Line Mutation , Humans , Introns , Kruppel-Like Transcription Factors , Models, Genetic , Molecular Sequence Data , Polymerase Chain Reaction , Promyelocytic Leukemia Zinc Finger Protein
15.
Hum Genet ; 104(3): 219-25, 1999 Mar.
Article in English | MEDLINE | ID: mdl-10323245

ABSTRACT

Hereditary paragangliomas (PGL, glomus tumors, MIM no.168000) are mostly benign, slow-growing tumors of the head and neck region. The gene (or genes) affecting risk to PGL are subject to genomic imprinting: children of affected fathers exhibit an autosomal dominant pattern of disease inheritance, whereas children of affected mothers rarely if ever develop the disease through maternal transmission. We previously confined the disease gene to an approximately 6 Mb critical region on chromosome band 11q23 (PGL1). Based on haplotype analysis of an extended Dutch pedigree, a 2 Mb sub-region between D11S938 and D11S1885 was proposed as the PGL1 critical interval. In this study, we excluded this interval by analysis of two new single tandem repeat polymorphisms (STRP) contained therein. Instead, we predicted a non-overlapping, more proximal 2 Mb critical interval between D11S1647 and D11S897, and evaluated this new region using nine STRP (D11S1986, five new, closely-linked STRP, D11S1347, D11S3178, and D11S1987). Consistent with our prediction, we observed substantial haplotype-sharing within the Dutch pedigree. We also analyzed four new American PGL families. A recombination event detected in one family further defined D11S1347 as the new telomeric border. We observed significant haplotype-sharing within this new interval among three unrelated American PGL families, strongly suggesting that they originated from a common ancestor. Thus, we confined PGL1 to an approximately 1.5 Mb region between D11S1986 and D11S1347, and showed identity-by-descent sharing for a group of American PGL families.


Subject(s)
Chromosomes, Human, Pair 11/genetics , Head and Neck Neoplasms/genetics , Paraganglioma/genetics , Chromosome Banding , Chromosome Mapping , Family Health , Female , Genetic Markers , Genotype , Haplotypes , Humans , Male , Pedigree
16.
Am J Hum Genet ; 64(6): 1646-54, 1999 Jun.
Article in English | MEDLINE | ID: mdl-10330351

ABSTRACT

Split-hand/split-foot malformation (SHFM, ectrodactyly, or lobster-claw deformity) is a human limb malformation characterized by aberrant development of central digital rays with absence of fingers and toes, a deep median cleft, and fusion of remaining digits. SHFM is clinically heterogeneous, presenting both in an isolated form and in combination with additional abnormalities affecting the tibia and/or other organ systems, including the genitourinary, craniofacial, and ectodermal structures. Three SHFM disease loci have been genetically mapped to chromosomes 7q21 (SHFM1), Xq26 (SHFM2), and 10q24 (SHFM3). We mapped data from a large Turkish family with isolated SHFM to chromosome 10q24 and have narrowed the SHFM3 region from 9 cM to an approximately 2-cM critical interval between genetic markers D10S1147 and D10S1240. In several instances we found evidence for a more severe phenotype in offspring of a mildly affected parent, suggesting anticipation. Finally, data from this family, combined with those from six other pedigrees, mapped to 10q24, demonstrate biased transmission of SHFM3 alleles from affected fathers to offspring. The degree of this segregation distortion is obvious in male offspring and is possibly of the same magnitude for female offspring.


Subject(s)
Chromosomes, Human, Pair 10 , Foot Deformities, Congenital/genetics , Hand Deformities, Congenital/genetics , Chromosome Mapping , Female , Fibroblast Growth Factor 8 , Fibroblast Growth Factors/genetics , Homeodomain Proteins/genetics , Humans , Karyotyping , Lod Score , Male , Mutation , Oncogene Proteins/genetics , Pedigree , Phenotype , Proto-Oncogene Proteins
17.
Gene ; 217(1-2): 107-16, 1998 Sep 14.
Article in English | MEDLINE | ID: mdl-9795170

ABSTRACT

Protein phosphatase 2A (PP2A) holoenzyme plays a critical role in cell-cycle control and growth-factor signaling, and is implicated in tumorigenesis. Because the protein phosphatase 2 regulatory subunit A beta isoform gene (PPP2R1B) maps within the critical region of hereditary paraganglioma (PGL1) on chromosomal band 11q23, we characterized its genomic structure and evaluated it as a candidate gene for PGL1. PPP2R1B has 15 exons spanning approx. 27kb genomic distance. We placed the exons on genomic EcoRI fragments and identified their flanking intronic sequences. The gene was oriented from telomere to centromere. Splice acceptor and donor sites of all introns conformed to the GT/AG rule. Northern analysis with a cDNA probe identified 2.5kb and 5.0kb transcript sizes. We identified an ATG initiation codon in a favorable context and mapped two transcription start sites 15bp and 66bp upstream of it. We also mapped a 3'-polyadenylation site 504bp downstream of the TGA stop codon, consistent with the 2.5kb transcript size. We did not detect germ-line mutations by single-stranded conformational polymorphism (SSCP) analysis or major rearrangements by Southern analysis in a set of PGL1 patients. In conclusion, we precisely mapped and characterized the structure of PPP2R1B and evaluated it as a candidate gene for PGL1.


Subject(s)
Chromosomes, Human, Pair 11 , Paraganglioma/genetics , Phosphoprotein Phosphatases/genetics , Base Sequence , Chromosome Banding , Chromosome Mapping , DNA Mutational Analysis , DNA Primers , Exons , Female , Holoenzymes/genetics , Humans , Introns , Isoenzymes/genetics , Molecular Sequence Data , Organ Specificity , Polymorphism, Single-Stranded Conformational , Pregnancy , Protein Phosphatase 2 , Reverse Transcriptase Polymerase Chain Reaction
18.
Am J Med Genet ; 81(1): 81-91, 1998 Feb 07.
Article in English | MEDLINE | ID: mdl-9514593

ABSTRACT

Analysis of an extended pedigree in which a balanced t(9;11)(p24;q23.1) translocation was found to cosegregate with bipolar affective disorder revealed that five of 11 translocation carriers had bipolar affective disorder and one carrier had unipolar depression. There were no affected individuals in the pedigree without the balanced translocation. We hypothesized that gene(s) or gene regulatory regions disrupted by the translocation might be contributing to the bipolar affective disorder in a dominant fashion. To test this hypothesis, we isolated the derivative chromosome 9 and derivative chromosome 11 in somatic cell hybrids and identified the nearest flanking markers on chromosome 9 (D9S230 and D9S2011E/HRFX3) and chromosome 11 (EST00652 and CRYA2). YAC contigs were constructed in the region of flanking markers for both chromosomes 9 and 11. Chromosome 11 breakpoint was localized within an 8-kb region in a small insert (100 kb) YAC. Chromosome 9 breakpoint was localized within approximately 2 Mb region. Several genes and ESTs including EST00652, CRYA2, DRD2, 5HTR3 on chromosome 11 and VLDLR and SLC1A1 on chromosome 9 were mapped within the vicinity of the breakpoint but were shown not to be disrupted by the translocation breakpoint. Although several possibilities exist regarding the role of the balanced translocation in developing bipolar affective disorder in this pedigree, including a chance cosegregation, identification of a disrupted gene or gene regulatory region with the help of physical mapping resources described in this study may help to identify the presence of a susceptibility gene for this disorder.


Subject(s)
Bipolar Disorder/genetics , Chromosomes, Human, Pair 11 , Chromosomes, Human, Pair 9 , Translocation, Genetic , Blotting, Southern , Chromosome Mapping , Chromosomes, Artificial, Yeast , Cloning, Molecular , Cosmids , Female , Humans , Male , Pedigree , Restriction Mapping
19.
Genomics ; 44(2): 214-21, 1997 Sep 01.
Article in English | MEDLINE | ID: mdl-9299238

ABSTRACT

The genes responsible for hereditary paragangliomas (glomus tumors, MIM No. 168000) have been mapped to two distinct loci on the long arm of chromosome 11. Most of the informative families appear to be linked to the distal locus on chromosome 11q23 (PGL1), which has been previously confined to a 2-cM interval by haplotype analysis in an extended Dutch pedigree. To facilitate the identification of the PGL1 disease gene, we constructed an approximately 4-Mb ordered clone contig map of Sequence tagged sites, expressed sequence tags (ESTs), and known genes that spans the PGL1 critical region on chromosome 11q23. Among 29 new positional candidate ESTs, only two (EST100999 and EST241777) mapped within the PGL1 critical region. We further characterized the genomic organization of the promyelocytic leukemia zinc finger (PLZF) gene that maps within the PGL1 critical region and physically excluded the serotonin receptor type 3 (5HT3R) gene. Finally, we identified a common, silent, single-base substitution polymorphism in the 5HT3R gene and characterized the allele sets of two new highly polymorphic microsatellite repeats within the PGL1 critical region.


Subject(s)
Chromosomes, Human, Pair 11/genetics , Glomus Tumor/genetics , Alleles , Base Sequence , Chromosome Mapping , Chromosomes, Artificial, Yeast/genetics , Cosmids , DNA Primers/genetics , DNA-Binding Proteins/genetics , Gene Expression , Humans , Kruppel-Like Transcription Factors , Microsatellite Repeats , Polymerase Chain Reaction , Polymorphism, Genetic , Promyelocytic Leukemia Zinc Finger Protein , Sequence Tagged Sites , Transcription Factors/genetics
20.
Am J Hum Genet ; 60(1): 121-32, 1997 Jan.
Article in English | MEDLINE | ID: mdl-8981955

ABSTRACT

Hereditary nonchromaffin paragangliomas (PGL; glomus tumors; MIM 168000) are mostly benign, slow-growing tumors of the head and neck region, inherited from carrier fathers in an autosomal dominant fashion subject to genomic imprinting. Genetic linkage analysis in two large, unrelated Dutch families assigned PGL loci to two regions of chromosome 11, at 11q23 (PGL1) and 11q13.1 (PGL2). We ascertained a total of 11 North American PGL families and confirmed maternal imprinting (inactivation). In three of six families, linkage analysis provided evidence of linkage to the PGL1 locus at 11q23. Recombinants narrowed the critical region to an approximately 4.5-Mb interval flanked by markers D11S1647 and D11S622. Partial allelic loss of strictly maternal origin was detected in 5 of 19 tumors. The greatest degree of imbalance was detected at 11q23, distal to D11S1327 and proximal to CD3D. Age at onset of symptoms was significantly different between fathers and children (Wilcoxon rank-sum test, P < .002). Affected children had an earlier age at onset of symptoms in 39 of 57 father-child pairs (chi2 = 7.74, P < .006). However, a more conservative comparison of the number of pairs in which a child had > or = 5 years earlier age at onset (n = 33) vis-a-vis that of complementary pairs (n = 24) revealed no significant difference (chi2 = 1.42, P > .2). Whether these data represent genetic anticipation or ascertainment bias can be addressed only by analysis of a larger number of father-child pairs.


Subject(s)
Chromosome Mapping , Chromosomes, Human, Pair 11 , Genomic Imprinting , Head and Neck Neoplasms/genetics , Paraganglioma, Extra-Adrenal/genetics , Adolescent , Adult , Age of Onset , Aged , Alleles , Child , Child, Preschool , Crossing Over, Genetic , Female , Genes, Tumor Suppressor , Genetic Heterogeneity , Genetic Linkage , Genotype , Humans , Infant , Infant, Newborn , Male , Middle Aged , Molecular Sequence Data , Pedigree
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