A new reliable reference gene UBA52 for quantitative real-time polymerase chain reaction studies in pyloric cecal tissues of the starfish Asterias rubens.

The starfish Asterias rubens is one of the most abundant echinoderm species in the White, Barents, North, and Baltic Seas. This species is an important component of marine ecosystems and a model object for certain biological studies, in particular those requiring quantitative estimation of gene expression. As a rule, expression at the transcriptional level is estimated by real-time qPCR using the ΔΔCt method, which allows the comparison of the copy number of target gene transcripts in samples with unknown mRNA/cDNA concentration. Application of this method requires normalization of the results relative to genes with stable expression levels (reference genes). The identification of reference genes is still a challenging task since data of this kind are missing for certain taxa, whereas the use of "standard" endogenous control genes without additional tests might lead to erroneous conclusions. We performed a preliminary analysis of the expression of many housekeeping genes in the pyloric ceca of A. rubens by high-throughput sequencing under normal and heat shock conditions. For one of them, the ubiquitin gene UBA52, low variation of expression (not greater than 2-fold) was shown using real-time qPCR. Tissues of pyloric ceca of normal adults and underyearlings and of adults after heat shock were used. The data obtained suggest that the UBA52 gene may be used as reference for normalization of gene expression at the mRNA level in the starfish A. rubens and probably in closely related species.

Fano interference in supported gold nanosandwiches with weakly coupled nanodisks.

We studied the far-field optical response of supported gold-silica-gold nanosandwiches using spectroscopic ellipsometry, reflectance and transmittance measurements. Although transmittance data clearly shows that the gold nanodisks in the sandwich structure interact very weakly, oblique reflectance spectra of s- and p-polarized light show clearly asymmetric line-shapes of the Fano type. However, all experimental results are very well described by modeling the gold nanodisks as oblate spheroids and by employing a 2 × 2 scattering matrix formulation of the Fresnel coefficients provided by an island film theory. In particular, the Fano asymmetry can be explained in terms of interference between the scattered waves from the decoupled nanodisks in the spectral range limited by their respective plasmon resonances. We also show that the reflectance and ellipsometry spectra can be described by a three-layer system with uniaxial effective dielectric functions.

Optical response of supported gold nanodisks.

It is shown that the ellipsometric spectra of short range ordered planar arrays of gold nanodisks supported on glass substrates can be described by modeling the nanostructured arrays as uniaxial homogeneous layers with dielectric functions of the Lorentz type. However, appreciable deviations from experimental data are observed in calculated spectra of irradiance measurements. A qualitative and quantitative description of all measured spectra is obtained with a uniaxial effective medium dielectric function in which the nanodisks are modeled as oblate spheroids. Dynamic depolarization factors in the long-wavelength approximation and interaction with the substrate are considered. Similar results are obtained calculating the optical spectra using the island-film theory. Nevertheless, a small in-plane anisotropy and quadrupolar coupling effects reveal a very complex optical response of the nanostructured arrays.