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1.
J Proteomics ; 151: 97-105, 2017 01 16.
Article in English | MEDLINE | ID: mdl-27321914

ABSTRACT

Schizophrenia is a complex disorder hypothesized to develop from a combination of genetic, neurodevelopmental, and environmental factors. Molecules that are directly involved in the pathogenesis of schizophrenia and may serve as biomarker candidates can be identified with "omics" approaches such as proteomics and peptidomics. In this context, we performed a peptidomic study in schizophrenia postmortem brains, to our knowledge the first such study in schizophrenia patients. We investigated the anterior temporal lobe (ATL) and corpus callosum (CC) by liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS) and a label-free ion quantification technique based on data-dependent acquisition (DDA). Results indicated alterations in a specific intracellular neurogranin peptide in both the ATL and CC and a decrease of PepH, a fragment of histone H2B type 1-H intracellular peptide, in the ATL. PepH was tested in serum-deprived Neuro2A cells and showed a protective effect against cell death. Cells were also challenged with lipopolysaccharide (LPS), and PepH was able to prevent the endotoxic effects of LPS. Our data suggest that specific intracellular peptides are altered in schizophrenia patients. The potential biological activity of PepH supports intracellular peptides as novel targets in the study not only of schizophrenia but also of other neuropsychiatric diseases. BIOLOGICAL SIGNIFICANCE: Psychiatric disorders are considerably more difficult to diagnose in their early stages. Usually, by the time the diagnosis is clear and clinical treatment can be started, the disorder is already established and thus of greater severity. Consequently, the scientific community has been searching for biomarker candidates that can aid the early detection of such disorders and for novel therapeutics to improve treatment or at least delay disease progression. Moreover, key molecules involved in the establishment of psychiatric diseases may help the understanding of their pathogenesis and thus drive the development of more effective treatments. The present work screened peptides that might be possible novel targets to control cell machinery in schizophrenia and identified an intracellular peptide with potential cytoprotective activity. To our knowledge, this is the first peptidomic study in schizophrenia patients.


Subject(s)
Corpus Callosum/chemistry , Peptides/analysis , Schizophrenia/pathology , Temporal Lobe/chemistry , Biomarkers/analysis , Cell Death/drug effects , Cell Line , Chromatography, Liquid , Corpus Callosum/pathology , Histones/analysis , Humans , Neurogranin/analysis , Proteomics/methods , Tandem Mass Spectrometry , Temporal Lobe/pathology
2.
Biochemical Journal ; 404(2): 279-288, 2007.
Article in English | Sec. Est. Saúde SP, SESSP-IBPROD, Sec. Est. Saúde SP, SESSP-IBACERVO | ID: biblio-1060811

ABSTRACT

The physicochemical properties of TOP (thimet oligopeptidase) and NEL (neurolysin) and their hydrolytic activities towards the FRET (fluorescence resonance energy transfer) peptide series Abz-GFSXFRQ-EDDnp [where Abz is o-aminobenzoyl; X = Ala, Ile, Leu, Phe, Tyr, Trp, Ser, Gln, Glu, His, Arg or Pro; and EDDnp is N-(2,4-dinitrophenyl)-ethylenediamine] were compared with those of site-mutated analogues. Mutations at Tyr605 and Ala 607 in TOP and at Tyr606 and Gly608 in NEL did not affect the overall folding of the two peptidases, as indicated by their thermal stability, CD analysis and the pH-dependence of the intrinsic fluorescence of the protein. The kinetic parameters for the hydrolysis of substrates with systematic variations at position P1 showed that Tyr605 and Tyr606 of TOP and NEL respectively, played a role in subsite S1. Ala607 of TOP and Gly608 of NEL contributed to the flexibility of the loops formed by residues 600-612 (GHLAGGYDGQYYG; one-letter amino acid codes used) in NEL and 599-611 (GHLAGGYDAQYYG; one-letter amino acid codes used) in TOP contributing to the distinct substrate specificities, particularly with an isoleucine residue at P1. TOP Y605A was inhibited less efficiently by JA-2 {N-[1-(R,S)-carboxy-3-phenylpropyl]Ala-Aib-Tyr-p-aminobenzoate}, which suggested that the aromatic ring of Tyr605 was an important anchor for its interaction with wild-type TOP. The hydroxy groups of Tyr605 and Tyr606 did not contribute to the pH-activity profiles, since the pKs obtained in the assays of mutants TOP Y605F and NEL Y606F were similar to those of wild-type peptidases. However, the pH-kcat/Km dependence curve of TOP Y605A differed from that of wild-type TOP and from TOP Y606F. These results provide insights into the residues involved in the substrate specificities of TOP and NEL and how they select cytosolic peptides for hydrolysis.


Subject(s)
Animals , Protease Inhibitors , Peptide Hydrolases/classification
3.
Biochem Biophys Res Commun ; 339(2): 520-5, 2006 Jan 13.
Article in English | MEDLINE | ID: mdl-16300734

ABSTRACT

Recent findings from our laboratory suggest that intracellular peptides containing putative post-translational modification sites (i.e., phosphorylation) could regulate specific protein interactions. Here, we extend our previous observations showing that peptide phosphorylation changes the kinetic parameters of structurally related endopeptidase EP24.15 (EC 3.4.24.15), neurolysin (EC 3.4.24.16), and angiotensin-converting enzyme (EC 3.4.15.1). Phosphorylation of peptides that are degraded by these enzymes leads to reduced degradation, whereas phosphorylation of peptides that interacted as competitive inhibitors of these enzymes alters only the K(i)'s. These data suggest that substrate phosphorylation could be one of the mechanisms whereby some intracellular peptides would escape degradation and could be regulating protein interactions within cells.


Subject(s)
Metalloendopeptidases/metabolism , Peptidyl-Dipeptidase A/metabolism , Amino Acid Sequence , Hydrolysis , Molecular Sequence Data , Phosphorylation , Substrate Specificity
4.
Biochem. biophys. res. commun ; 339(2): 520-525, 2006.
Article in English | Sec. Est. Saúde SP, SESSP-IBPROD, Sec. Est. Saúde SP, SESSP-IBACERVO | ID: biblio-1060803

ABSTRACT

Recent findings from our laboratory suggest that intracellular peptides containing putative post-translational modification sites (i.e., phosphorylation) could regulate specific protein interactions. Here, we extend our previous observations showing that peptide phosphorylation changes the kinetic parameters of structurally related endopeptidase EP24.15 (EC 3.4.24.15), neurolysin (EC 3.4.24.16), and angiotensin-converting enzyme (EC 3.4.15.1). Phosphorylation of peptides that are degraded by these enzymes leads to reduced degradation, whereas phosphorylation of peptides that interacted as competitive inhibitors of these enzymes alters only the Ki's. These data suggest that substrate phosphorylation could be one of the mechanisms whereby some intracellular peptides would escape degradation and could be regulating protein interactions within cells.


Subject(s)
Humans , Phosphorylation , Peptides/classification , Proteasome Endopeptidase Complex
5.
Physiol Genomics ; 20(2): 173-82, 2005 Jan 20.
Article in English | MEDLINE | ID: mdl-15522949

ABSTRACT

Mice harboring 1, 2, or 3 copies of the angiotensin-converting enzyme (ACE) gene were used to evaluate the quantitative role of the ACE locus on obesity. Three-copy mice fed with a high-fat diet had lower body weight and peri-epididymal adipose tissue than did 1- and 2-copy mice (P < 0.05). On regular diet, 3-copy mice had to eat more to maintain the same body weight; on a high-fat diet, they ate the same but weighed less than 1- and 2-copy mice (P < 0.05), indicating a higher metabolic rate in 3-copy mice that was not affected by ANG II AT(1) blocker treatment. A catalytically inactive form of thimet oligopeptidase (EC 3.4.24.15; EP24.15) was used to isolate ACE substrates from adipose tissue. Liquid chromatography electrospray ionization tandem mass spectrometry (LC-ESI-MS/MS) identified 162 peptide peaks; 16 peptides were present in both groups (1- and 3-copy mice fed with a high-fat diet), whereas 58 of the 72 unique peptides were found only in the 3-copy mice. Peptide size distribution was shifted to lower molecular weight in 3-copy mice. Two of the identified peptides, LVVYPWTQRY and VVYPWTQRY, which are ACE substrates, inhibited in vitro protein kinase C phosphorylation in a concentration-dependent manner. In addition, neurolysin (EC 3.4.24.16; EP24.16) activity was lower in fat tissue from 3- vs. 1-copy mice (P < 0.05). Taken together, these results provide evidence that ACE is associated with body weight and peri-epididymal fat accumulation. This response may involve the generation of oligopeptides that inhibit the activity of EP24.16 and other oligopeptidases within the adipose tissue.


Subject(s)
Peptidyl-Dipeptidase A/physiology , Adipose Tissue , Animals , Body Weight , Chromatography, Liquid , Dose-Response Relationship, Drug , Male , Metalloendopeptidases/genetics , Mice , Mice, Transgenic , Models, Statistical , Oligopeptides/chemistry , Peptide Hydrolases/chemistry , Peptides/chemistry , Peptidyl-Dipeptidase A/genetics , Phenotype , Phosphorylation , Protein Kinase C/metabolism , Risk Factors , Spectrometry, Mass, Electrospray Ionization
6.
J Bacteriol ; 186(7): 2164-72, 2004 Apr.
Article in English | MEDLINE | ID: mdl-15028702

ABSTRACT

Leptospira species colonize a significant proportion of rodent populations worldwide and produce life-threatening infections in accidental hosts, including humans. Complete genome sequencing of Leptospira interrogans serovar Copenhageni and comparative analysis with the available Leptospira interrogans serovar Lai genome reveal that despite overall genetic similarity there are significant structural differences, including a large chromosomal inversion and extensive variation in the number and distribution of insertion sequence elements. Genome sequence analysis elucidates many of the novel aspects of leptospiral physiology relating to energy metabolism, oxygen tolerance, two-component signal transduction systems, and mechanisms of pathogenesis. A broad array of transcriptional regulation proteins and two new families of afimbrial adhesins which contribute to host tissue colonization in the early steps of infection were identified. Differences in genes involved in the biosynthesis of lipopolysaccharide O side chains between the Copenhageni and Lai serovars were identified, offering an important starting point for the elucidation of the organism's complex polysaccharide surface antigens. Differences in adhesins and in lipopolysaccharide might be associated with the adaptation of serovars Copenhageni and Lai to different animal hosts. Hundreds of genes encoding surface-exposed lipoproteins and transmembrane outer membrane proteins were identified as candidates for development of vaccines for the prevention of leptospirosis.


Subject(s)
Genome, Bacterial , Genomics , Leptospira interrogans/physiology , Leptospira interrogans/pathogenicity , Animals , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Cricetinae , Humans , Leptospira interrogans/classification , Leptospira interrogans/genetics , Leptospirosis/microbiology , Mice , Molecular Sequence Data , Sequence Analysis, DNA , Serotyping , Virulence/genetics
7.
J Bacteriol ; 185(3): 1018-26, 2003 Feb.
Article in English | MEDLINE | ID: mdl-12533478

ABSTRACT

Xylella fastidiosa is a xylem-dwelling, insect-transmitted, gamma-proteobacterium that causes diseases in many plants, including grapevine, citrus, periwinkle, almond, oleander, and coffee. X. fastidiosa has an unusually broad host range, has an extensive geographical distribution throughout the American continent, and induces diverse disease phenotypes. Previous molecular analyses indicated three distinct groups of X. fastidiosa isolates that were expected to be genetically divergent. Here we report the genome sequence of X. fastidiosa (Temecula strain), isolated from a naturally infected grapevine with Pierce's disease (PD) in a wine-grape-growing region of California. Comparative analyses with a previously sequenced X. fastidiosa strain responsible for citrus variegated chlorosis (CVC) revealed that 98% of the PD X. fastidiosa Temecula genes are shared with the CVC X. fastidiosa strain 9a5c genes. Furthermore, the average amino acid identity of the open reading frames in the strains is 95.7%. Genomic differences are limited to phage-associated chromosomal rearrangements and deletions that also account for the strain-specific genes present in each genome. Genomic islands, one in each genome, were identified, and their presence in other X. fastidiosa strains was analyzed. We conclude that these two organisms have identical metabolic functions and are likely to use a common set of genes in plant colonization and pathogenesis, permitting convergence of functional genomic strategies.


Subject(s)
Citrus/microbiology , Gammaproteobacteria/genetics , Genome, Bacterial , Plant Diseases/microbiology , Base Sequence , Molecular Sequence Data
8.
J Comp Neurol ; 438(4): 399-410, 2001 Oct 01.
Article in English | MEDLINE | ID: mdl-11559896

ABSTRACT

Endopeptidase 24.15 (EP24.15) and 24.16 (EP24.16) are closely related metalloendopeptidases implicated in the metabolism of several neuropeptides and widely expressed in mammalian brain. To gain insight into the functional role of these two enzymes in the central nervous system, we examined their cellular and subcellular distribution in rat brain by using electron microscopic immunogold labeling. In all areas examined, EP24.15 and EP24.16 immunoreactivity were observed in selective subpopulations of neuronal and glial cells. Subcellular localization of EP24.15 in neurons revealed that this enzyme was predominantly concentrated in the nucleus, whereas EP24.16 was almost exclusively cytoplasmic. The amount of EP24.15 found in the nucleus was inversely correlated with that found in the cytoplasm, suggesting that the enzyme could be mobilized from one compartment to the other. Within the cytoplasm, EP24.15 and EP24.16 immunoreactivity showed comparable distributional patterns. Both enzymes were detected throughout perikarya and dendrites, as well as within axons and axon terminals. In all neuronal compartments, EP24.15 and EP24.16 showed a major association with membranes of neurosecretory elements, including Golgi cisternae, tubulovesicular organelles, synaptic vesicles, and endosomes. However, whereas EP24.15 always faced the cytoplasmic face of the membranes, EP24.16 was observed on both cytoplasmic and luminal sides, suggesting that the latter was more likely to contribute to the processing of peptides or to the degradation of internalized ligands. Taken together, the present results suggest that EP24.15 could play a major role in the hydrolysis of intranuclear substrates, whereas EP24.16 would be predominantly involved in the processing and inactivation of signaling peptides.


Subject(s)
Brain/enzymology , Metalloendopeptidases/metabolism , Neuroglia/enzymology , Neurons/enzymology , Neuropeptides/metabolism , Animals , Brain/ultrastructure , Cell Compartmentation/physiology , Cell Nucleus Structures/enzymology , Cell Nucleus Structures/ultrastructure , Cerebellar Cortex/enzymology , Cerebellar Cortex/ultrastructure , Cerebral Cortex/enzymology , Cerebral Cortex/ultrastructure , Cytoskeleton/enzymology , Cytoskeleton/ultrastructure , Dendrites/enzymology , Dendrites/ultrastructure , Immunohistochemistry , Intracellular Membranes/enzymology , Intracellular Membranes/ultrastructure , Male , Microscopy, Electron , Neuroglia/ultrastructure , Neurons/ultrastructure , Organelles/enzymology , Organelles/ultrastructure , Presynaptic Terminals/enzymology , Presynaptic Terminals/ultrastructure , Rats , Rats, Wistar , Solitary Nucleus/enzymology , Solitary Nucleus/ultrastructure
9.
Anal Biochem ; 292(2): 257-65, 2001 May 15.
Article in English | MEDLINE | ID: mdl-11355859

ABSTRACT

Internally quenched fluorescent peptides derived from neurotensin (pELYENKPRRPYIL) sequence were synthesized and assayed as substrates for neurolysin (EC 3.4.24.16), thimet oligopeptidase (EC 3.4.24.15 or TOP), and neprilysin (EC 3.4.24.11 or NEP). Abz-LYENKPRRPYILQ-EDDnp (where EDDnp is N-(2,4-dinitrophenyl)ethylenediamine and Abz is ortho-aminobenzoic acid) was derived from neurotensin by the introduction of Q-EDDnp at the C-terminal end of peptide and by the substitution of the pyroglutamic (pE) residue at N-terminus for Abz and a series of shorter peptides was obtained by deletion of amino acids residues from C-terminal, N-terminal, or both sides. Neurolysin and TOP hydrolyzed the substrates at P--Y or Y--I or R--R bonds depending on the sequence and size of the peptides, while NEP cleaved P-Y or Y-I bonds according to its S'(1) specificity. One of these substrates, Abz-NKPRRPQ-EDDnp was a specific and sensitive substrate for neurolysin (k(cat) = 7.0 s(-1), K(m) = 1.19 microM and k(cat)/K(m) = 5882 mM(-1). s(-1)), while it was completely resistant to NEP and poorly hydrolyzed by TOP and also by prolyl oligopeptidase (EC 3.4.21.26). Neurolysin concentrations as low as 1 pM were detected using this substrate under our conditions and its analogue Abz-NKPRAPQ-EDDnp was hydrolyzed by neurolysin with k(cat) = 14.03 s(-1), K(m) = 0.82 microM, and k(cat)/K(m) = 17,110 mM(-1). s(-1), being the best substrate so far described for this peptidase.


Subject(s)
Fluorescent Dyes/metabolism , Metalloendopeptidases/metabolism , Neprilysin/metabolism , Neurotensin/analogs & derivatives , Neurotensin/metabolism , Alanine/genetics , Alanine/metabolism , Amino Acid Sequence , Fluorescent Dyes/chemistry , Humans , Hydrolysis , Kinetics , Mutation/genetics , Neurotensin/chemistry , Prolyl Oligopeptidases , Sensitivity and Specificity , Serine Endopeptidases/metabolism , Substrate Specificity
10.
Biochemistry ; 40(14): 4417-25, 2001 Apr 10.
Article in English | MEDLINE | ID: mdl-11284698

ABSTRACT

We report a systematic and detailed analysis of recombinant neurolysin (EC 3.4.24.16) specificity in parallel with thimet oligopeptidase (TOP, EC 3.4.24.15) using Bk sequence and its C- and N-terminal extensions as in human kininogen as motif for synthesis of internally quenched fluorescent substrates. The influence of the substrate size was investigated, and the longest peptide susceptible to TOP and neurolysin contains 17 amino acids. The specificities of both oligopeptidases to substrate sites P(4) to P(3)' were also characterized in great detail using seven series of peptides based on Abz-GFSPFRQ-EDDnp taken as reference substrate. Most of the peptides were hydrolyzed at the bond corresponding to P(4)-F(5) in the reference substrate and some of them were hydrolyzed at this bond or at F(2)-S(3) bond. No restricted specificity was found for P(1)' as found in thermolysin as well for P(1) substrate position, however the modifications at this position (P(1)) showed to have large influence on the catalytic constant and the best substrates for TOP contained at P(1), Phe, Ala, or Arg and for neurolysin Asn or Arg. Some amino acid residues have large influence on the K(m) constants independently of its position. On the basis of these results, we are hypothesizing that some amino acids of the substrates can bind to different sub-sites of the enzyme fitting P-F or F-S bond, which requires rapid interchange for the different forms of interaction and convenient conformations of the substrate in order to expose and fit the cleavage bonds in correct position for an efficient hydrolysis. Finally, this plasticity of interaction with the substrates can be an essential property for a class of cytosolic oligopeptidases that are candidates to participate in the selection of the peptides to be presented by the MHC class I.


Subject(s)
Metalloendopeptidases/metabolism , Recombinant Proteins/metabolism , Amino Acid Sequence , Animals , Chromogenic Compounds/metabolism , Ethylenediamines/metabolism , Humans , Hydrolysis , Kinetics , Kininogens/metabolism , Male , Mass Spectrometry , Metalloendopeptidases/chemistry , Molecular Sequence Data , Oligopeptides/chemical synthesis , Oligopeptides/metabolism , Rats , Recombinant Proteins/chemistry , Substrate Specificity , Swine , ortho-Aminobenzoates/metabolism
11.
Brain Res ; 863(1-2): 249-53, 2000 Apr 28.
Article in English | MEDLINE | ID: mdl-10773214

ABSTRACT

Lesion, immunohistochemical, and immunoblotting methods were used to evaluate the effects of cholinergic deafferentation upon the expression of the alpha2 subunit of the nicotinic acetylcholine receptors in the lateral spiriform nucleus (SpL) of the chick brain. The expression of the alpha2 subunit in the SpL showed biphasic changes after lesion of its cholinergic source (nucleus semilunaris), with an increase after 2 days postlesion and a decrease after 3-7 days. Our results could represent a correlate of the phenomena of nicotinic receptor up- and down-regulation, induced by removal of the cholinergic input.


Subject(s)
Brain/cytology , Brain/metabolism , Chickens/anatomy & histology , Chickens/metabolism , Cholinergic Fibers/metabolism , Denervation/adverse effects , Gene Expression Regulation, Developmental/physiology , Neural Pathways/metabolism , Receptors, Nicotinic/metabolism , Animals , Animals, Newborn , Choline O-Acetyltransferase/metabolism , Cholinergic Fibers/ultrastructure , Immunohistochemistry , Nerve Degeneration/physiopathology , Neural Pathways/cytology , Time Factors
12.
Biochem Biophys Res Commun ; 269(1): 7-13, 2000 Mar 05.
Article in English | MEDLINE | ID: mdl-10694468

ABSTRACT

Oligopeptidases are tissue endopeptidases that do not attack proteins and are likely to be involved in the maturation and degradation of peptide hormones and neuropeptides. The rabbit brain endooligopeptidase A and the rat testes soluble metallopeptidase (EC 3.4.24.15) are thiol-activated oligopeptidases which are able to generate enkephalin from a number of opioid peptides and to inactivate bradykinin and neurotensin by hydrolyzing the same peptide bonds. A monospecific antibody raised against the purified rabbit brain endooligopeptidase A allowed the identification of a 2. 3 kb cDNA coding for a truncated enzyme of 512 amino acids, displaying the same enzymatic features as endooligopeptidase A. In spite of all efforts, employing several strategies, the full-length cDNA could not be cloned until now. The analysis of the deduced amino acid sequence showed no similarity to the rat testes metalloendopeptidase sequence, except for the presence of the typical metalloprotease consensus sequence [HEXXH]. The antibody raised against recombinant endooligopeptidase A specifically inhibited its own activity and reduced the thiol-activated oligopeptidase activity of rabbit brain cytosol to less than 30%. Analysis of the endooligopeptidase A tissue distribution indicated that this enzyme is mainly expressed in the CNS, whereas the soluble metallo EC 3.4.24.15 is mainly expressed in peripheral tissues.


Subject(s)
Brain/enzymology , Metalloendopeptidases/genetics , Metalloendopeptidases/immunology , Amino Acid Sequence , Animals , Antibodies , Base Sequence , Cloning, Molecular , Cytosol/enzymology , DNA, Complementary/genetics , Immunochemistry , Male , Metalloendopeptidases/chemistry , Mice , Mice, Inbred BALB C , Molecular Sequence Data , RNA, Messenger/genetics , RNA, Messenger/metabolism , Rabbits , Rats , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Tissue Distribution
13.
Biochem Biophys Res Commun ; 255(3): 591-5, 1999 Feb 24.
Article in English | MEDLINE | ID: mdl-10049755

ABSTRACT

The initial processing of antigens leading to major histocompatibility complex (MHC) class I antigenic peptides is carried out by the proteasome. However, how the final epitopes are generated and protected from degradation by cytosolic peptidases remains unknown. Coincidentally, peptides associated with the MHC class I molecules range from 8 to 13 amino acid residues, similarly to the optimum substrate size required for the cytosolic thimet oligopeptidase. Here we have investigated the putative intracellular function of thimet oligopeptidase related to antigen presentation. Using a well-characterized antigen-presenting cell system, we were able to demonstrate either inhibition or stimulation of CD8 T cell proliferation and cytotoxicity, manipulating intracellular thimet oligopeptidase levels with its specific inhibitor cFP-Ala-Ala-Tyr-pAb or loading the enzyme itself into the antigen-presenting cells. Our results suggest that thimet oligopeptidase should take an important function in the pathway of antigen presentation via MHC class I through a mechanism yet unknown.


Subject(s)
Antigen-Presenting Cells/immunology , Histocompatibility Antigens Class I/immunology , Metalloendopeptidases/immunology , Antigen-Presenting Cells/enzymology , CD4-Positive T-Lymphocytes/enzymology , CD4-Positive T-Lymphocytes/immunology , CD8-Positive T-Lymphocytes/enzymology , CD8-Positive T-Lymphocytes/immunology , Cysteine Endopeptidases/metabolism , Cytotoxicity Tests, Immunologic , Enzyme Inhibitors , Flow Cytometry , Immunohistochemistry , Liposomes/metabolism , Macrophages, Peritoneal/metabolism , Multienzyme Complexes/metabolism , Oligopeptides/pharmacology , Proteasome Endopeptidase Complex
14.
Biochem Biophys Res Commun ; 255(3): 596-601, 1999 Feb 24.
Article in English | MEDLINE | ID: mdl-10049756

ABSTRACT

In this study we investigated the fate of a class of proteasome-generated oligopeptides, exposing them to the crude cytosol of macrophages or to the purified recombinant thimet oligopeptidase. Among the proteasome products of known sequences are MHC class I epitopes, 13 of which were randomly chosen to be used as putative substrates. Surprisingly, our results clearly showed that the majority of the peptides were poorly or not degraded, either by the purified enzyme or by the crude macrophage cytosol. The peptides, which were resistant to hydrolysis, displayed high affinity for the thimet oligopeptidase as competitive inhibitors. Regardless of the fact that our data do not allow prediction of whether or not a specific peptide would be degraded, it seems very likely that the structural features, which rule out the stability of the MHC class I peptides in the cytosol, may have implications in an optimized repertoire selection for antigen presentation.


Subject(s)
Histocompatibility Antigens Class I/metabolism , Macrophages/enzymology , Metalloendopeptidases/metabolism , Oligopeptides/metabolism , Animals , Antigen Presentation/immunology , Antigen-Presenting Cells/enzymology , Cysteine Endopeptidases/metabolism , Enzyme Inhibitors/pharmacology , Epitopes/chemistry , Epitopes/immunology , Kinetics , Male , Multienzyme Complexes/metabolism , Oligopeptides/pharmacology , Proteasome Endopeptidase Complex , Rats , Recombinant Proteins/metabolism , Substrate Specificity , Testis/enzymology
15.
Brain Res ; 851(1-2): 261-5, 1999 Dec 18.
Article in English | MEDLINE | ID: mdl-10642854

ABSTRACT

Immunohistochemistry was used to analyze the rat brain distribution of thimet oligopeptidase and neurolysin. Both enzymes appear ubiquitously distributed within the entire rat brain. However, neuronal perikarya and processes stained for neurolysin, while intense nuclear labeling was only observed for thimet oligopeptidase. These data suggest that neurolysin and thimet oligopeptidase, endopeptidases sharing several functional and structural similarities, are present in distinctive intracellular compartments in neuronal cells.


Subject(s)
Brain Chemistry , Metalloendopeptidases/analysis , Neurons/chemistry , Animals , Male , Rats , Rats, Wistar
16.
Brain Res ; 810(1-2): 283-7, 1998 Nov 09.
Article in English | MEDLINE | ID: mdl-9813371

ABSTRACT

Effects of retinal lesions on the expression of AMPA-type glutamate receptor (GluR) subunits in the chick optic tectum were evaluated with immunohistochemistry and immunoblotting. Expression of GluR1 and GluR2/3 subunits decreased in the deafferented tectum after 2 days and increased after 7 days postlesion. These results suggest biphasic effects of retinal lesions upon the expression of GluR subunits, possibly due to removal of the glutamatergic input from the retina.


Subject(s)
Chickens/physiology , Neurons, Afferent/physiology , Receptors, AMPA/biosynthesis , Retina/physiology , Superior Colliculi/metabolism , Animals , Cell Survival/physiology , Denervation , Histocytochemistry , Image Processing, Computer-Assisted
17.
Biochem Biophys Res Commun ; 250(1): 5-11, 1998 Sep 08.
Article in English | MEDLINE | ID: mdl-9735321

ABSTRACT

Endopeptidase EC 3.4.24.16 (EP24.16c, neurolysin) and thimet oligopeptidase EC 3.4.24.15 are close related members of a large family of metalloproteases. Besides their cytosolic and membrane bound form, endopeptidase EC 3.4.24.16 appears to be present in the inner membrane of the mitochondria (EP24.16m). We have overexpressed two porcine EP24.16 isoforms in E. coli and purified the recombinant proteins to homogeneity. We show here that these peptidases hydrolyse a series of neuropeptides with similar rates and at sites reminiscent of those elicited by classically purified human brain EP24.16c. All neuropeptides, except neurotensin, were similarly cleaved by recombinant endopeptidase 3.4.24.15 (EP24.15, thimet oligopeptidase), another zinc-containing metalloenzyme structurally related to EP24.16. These two EP24.16 isoforms were drastically inhibited by Pro-Ile and dithiothreitol and remained unaffected by a specific carboalkyl inhibitor (CFP-AAY-pAb) directed toward the related EP24.15. The present purification procedure of EP24.16 should allow to establish, by mutagenesis analysis, the mechanistic properties of the enzyme.


Subject(s)
Isoenzymes/metabolism , Metalloendopeptidases/metabolism , Neuropeptides/metabolism , Amino Acid Sequence , Animals , Base Sequence , Cytosol/enzymology , DNA, Complementary , Enzyme Activation , Humans , Hydrolysis , Isoenzymes/antagonists & inhibitors , Isoenzymes/genetics , Metalloendopeptidases/antagonists & inhibitors , Metalloendopeptidases/genetics , Mitochondria/enzymology , Molecular Sequence Data , Recombinant Proteins/antagonists & inhibitors , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Substrate Specificity , Swine
18.
Biochem J ; 324 ( Pt 2): 517-22, 1997 Jun 01.
Article in English | MEDLINE | ID: mdl-9182712

ABSTRACT

A systematic analysis of the peptide sequences and lengths of several homologues of bioactive peptides and of a number of quenched-fluorescence (qf) opioid- and bradykinin-related peptides was performed to determine the main features leading the oligopeptides to hydrolysis by the recombinant rat testis thimet oligopeptidase (EC 3.4.24.15). The results indicate that a minimum substrate length of six amino acids is required and that among the oligopeptides six to thirteen amino acid residues long, their susceptibility as substrates is highly variable. Thimet oligopeptidase was able to hydrolyse, with similar catalytic efficiency, peptide bonds having hydrophobic or hydrophilic amino acids as well as proline in the P1 position of peptides, ranging from a minimum of six to a maximum of approximately thirteen amino acid residues. An intriguing observation was the shift of the cleavage site, at a Leu-Arg bond in qf dynorphin-(2-8) [qf-Dyn2-8; Abz-GGFLRRV-EDDnp, where Abz stands for o-aminobenzoyl and EDDnp for N-(2,4-dinitrophenyl)ethylenediamine], to Arg-Arg in qf-Dyn2-8Q, in which Gln was substituted for Val at its C-terminus. Similarly, a cleavage site displacement was also observed with the hydrolysis of the internally quenched-fluorescence bradykinin analogues containing Gln at the C-terminal position, namely Abz-RPPGFSPFR-EDDnp and Abz-GFSPFR-EDDnp are cleaved at the Phe-Ser bond, but Abz-RPPGFSPFRQ-EDDnp and Abz-GFSPFRQ-EDDnp are cleaved at the Pro-Phe bond.


Subject(s)
Metalloendopeptidases/metabolism , Oligopeptides/chemistry , Amino Acid Sequence , Animals , Bradykinin/metabolism , Chemical Phenomena , Chemistry, Physical , Dynorphins/metabolism , Hydrolysis , Male , Molecular Sequence Data , Oligopeptides/metabolism , Rats , Recombinant Fusion Proteins/metabolism , Structure-Activity Relationship , Substrate Specificity , Testis/enzymology
19.
Biol Chem Hoppe Seyler ; 377(5): 283-91, 1996 May.
Article in English | MEDLINE | ID: mdl-8828819

ABSTRACT

The recombinant rat testes metallo-endooligopeptidase (EC 3.4.24.15) and the rabbit brain endooligopeptidase A (formerly EC 3.4.22.19) were compared, side-by-side, in view of their striking similarities in both the physicochemical features and the specificities for oligopeptides. Concerning the tissue distribution in rat and rabbit, no relation between the levels of enzyme activity in cytosol and the levels of metallo-endooligopeptidase 24.15 mRNA could be established. The results suggest that the predominant neuropeptide-metabolizing activity attributed to the metallo-endooligopeptidase 24.15 is performed by, at least, two distinct cytosolic enzymes, one predominant in rat testes and the other in rabbit brain and testes, and possibly also in rat brain. Both enzymes are activated by dithiothreitol and irreversibly inhibited by a SH-affinity labeling dynorphin-related compound, but they are not inhibited by EDTA in a concentration dependent manner. Both enzymes exhibit the same specificity toward several bioactive peptides, except for LH-RH and substance P, which are only hydrolysed by the rat testes enzyme. Taken together, these results lead us to conclude that it is unlikely that the recombinant rat testes metallo-endooligopeptidase 24.15 and the rabbit brain endooligopeptidase A are the same molecule although they might belong to the same family of oligopeptidases.


Subject(s)
Metalloendopeptidases/metabolism , Amino Acid Sequence , Animals , Blotting, Northern , Blotting, Western , Brain/enzymology , Chelating Agents/pharmacology , Cytosol/enzymology , Dithiothreitol/pharmacology , Edetic Acid/pharmacology , Electrophoresis, Polyacrylamide Gel , Hydrolysis , Male , Metalloendopeptidases/antagonists & inhibitors , Metalloendopeptidases/isolation & purification , Molecular Sequence Data , Rabbits , Rats , Recombinant Proteins/chemistry , Species Specificity , Substrate Specificity , Sulfhydryl Reagents/pharmacology , Testis/enzymology
20.
J Cell Biochem ; 57(2): 311-20, 1995 Feb.
Article in English | MEDLINE | ID: mdl-7759568

ABSTRACT

Endooligopeptidase A is a putative neuropeptide-metabolizing enzyme. It converts small enkephalin-containing peptides into the corresponding enkephalins and inactivates biopeptides such as bradykinin and neurotensin in vitro. We investigated the presence of endooligopeptidase A in PC12 cells. This cell line was derived from a rat pheochromocytoma tumor and resembles fetal chromaffin cell. Depending on the supplements added to the cell culture, this cell line can be differentiated into mature chromaffin cell or sympathetic neuron-like cell. Endooligopeptidase A activity was measured in soluble cellular extracts using a specific fluorogenic substrate QF-ERP7. The PC12 endooligopeptidase A-like activity shared similar but not identical biochemical properties with rabbit brain endooligopeptidase A. Similarly to rabbit brain endooligopeptidase A, the PC12 endooligopeptidase A-like activity was enhanced by DTT, totally inhibited by DTNB and 1-10 Phenanthroline, partially inhibited by cFP-AAF-pAb, and not affected by PMSF. Furthermore, the PC12 endooligopeptidase A-like activity displayed identical elution profile as rabbit brain endooligopeptidase A in gel filtration and anion-exchange chromatography. In addition, an antiserum raised against rabbit brain endooligopeptidase A cross-reacted with a 71 kDa component from PC12 cell extracts in Western blotting and was also able to partially neutralize the PC12 endooligopeptidase A-like activity. Treatment of PC12 cells with basic fibroblast growth factor (bFGF), a neurotrophic factor for this cell line, did not modify the specific activity of this enzyme. However, cAMP analogs decreased the specific activity of the enzyme. These results indicate the presence of an endooligopeptidase A-like activity in PC12 cells which is modulated by cAMP but not by bFGF.


Subject(s)
8-Bromo Cyclic Adenosine Monophosphate/pharmacology , Bucladesine/pharmacology , Cyclic AMP/physiology , Fibroblast Growth Factor 2/pharmacology , Metalloendopeptidases/metabolism , Adrenal Gland Neoplasms , Animals , Blotting, Western , Brain/enzymology , Cell Differentiation , Chromatography, Gel , Dithionitrobenzoic Acid/pharmacology , Dithiothreitol/pharmacology , Ethylenediamines , Immune Sera , Kinetics , Metalloendopeptidases/isolation & purification , Oligopeptides , PC12 Cells , Phenanthrolines/pharmacology , Pheochromocytoma , Rabbits , Rats
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