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1.
Mar Drugs ; 20(4)2022 Mar 22.
Article in English | MEDLINE | ID: mdl-35447892

ABSTRACT

Aquatic invertebrates are a major source of biomaterials and bioactive natural products that can find applications as pharmaceutics, nutraceutics, cosmetics, antibiotics, antifouling products and biomaterials. Symbiotic microorganisms are often the real producers of many secondary metabolites initially isolated from marine invertebrates; however, a certain number of them are actually synthesized by the macro-organisms. In this review, we analysed the literature of the years 2010-2019 on natural products (bioactive molecules and biomaterials) from the main phyla of marine invertebrates explored so far, including sponges, cnidarians, molluscs, echinoderms and ascidians, and present relevant examples of natural products of interest to public and private stakeholders. We also describe omics tools that have been more relevant in identifying and understanding mechanisms and processes underlying the biosynthesis of secondary metabolites in marine invertebrates. Since there is increasing attention on finding new solutions for a sustainable large-scale supply of bioactive compounds, we propose that a possible improvement in the biodiscovery pipeline might also come from the study and utilization of aquatic invertebrate stem cells.


Subject(s)
Biological Products , Animals , Aquatic Organisms/metabolism , Biocompatible Materials/metabolism , Biological Products/metabolism , Biological Products/pharmacology , Echinodermata , Invertebrates/metabolism , Marine Biology
2.
Sci Total Environ ; 771: 144565, 2021 Jun 01.
Article in English | MEDLINE | ID: mdl-33736145

ABSTRACT

Environmental stressors are assessed through methods that quantify their impacts on a wide range of metrics including species density, growth rates, reproduction, behaviour and physiology, as on host-pathogen interactions and immunocompetence. Environmental stress may induce additional sublethal effects, like mutations and epigenetic signatures affecting offspring via germline mediated transgenerational inheritance, shaping phenotypic plasticity, increasing disease susceptibility, tissue pathologies, changes in social behaviour and biological invasions. The growing diversity of pollutants released into aquatic environments requires the development of a reliable, standardised and 3R (replacement, reduction and refinement of animals in research) compliant in vitro toolbox. The tools have to be in line with REACH regulation 1907/2006/EC, aiming to improve strategies for potential ecotoxicological risks assessment and monitoring of chemicals threatening human health and aquatic environments. Aquatic invertebrates' adult stem cells (ASCs) are numerous and can be pluripotent, as illustrated by high regeneration ability documented in many of these taxa. This is of further importance as in many aquatic invertebrate taxa, ASCs are able to differentiate into germ cells. Here we propose that ASCs from key aquatic invertebrates may be harnessed for applicable and standardised new tests in ecotoxicology. As part of this approach, a battery of modern techniques and endpoints are proposed to be tested for their ability to correctly identify environmental stresses posed by emerging contaminants in aquatic environments. Consequently, we briefly describe the current status of the available toxicity testing and biota-based monitoring strategies in aquatic environmental ecotoxicology and highlight some of the associated open issues such as replicability, consistency and reliability in the outcomes, for understanding and assessing the impacts of various chemicals on organisms and on the entire aquatic environment. Following this, we describe the benefits of aquatic invertebrate ASC-based tools for better addressing ecotoxicological questions, along with the current obstacles and possible overhaul approaches.


Subject(s)
Ecotoxicology , Water Pollutants, Chemical , Animals , Aquatic Organisms , Humans , Invertebrates , Reproducibility of Results , Stem Cells , Water Pollutants, Chemical/toxicity
3.
Nanotoxicology ; 14(10): 1342-1361, 2020 12.
Article in English | MEDLINE | ID: mdl-33078975

ABSTRACT

We investigated the toxicity of Iron oxide and Zinc oxide engineered nanoparticles (ENPs) on Paracentrotus lividus sea urchin embryos and three species of microalgae. Morphological responses, internalization, and potential impacts of Fe2O3 and ZnO ENPs on physiology and metabolism were assessed. Both types of ENPs affected P. lividus larval development, but ZnO ENPs had a much stronger effect. While growth of the alga Micromonas commoda was severely impaired by both ENPs, Ostreococcus tauri or Nannochloris sp. were unaffected. Transmission electron microscopy showed the internalization of ENPs in sea urchin embryonic cells while only nanoparticle interaction with external membranes was evidenced in microalgae, suggesting that marine organisms react in diverse ways to ENPs. Transcriptome-wide analysis in P. lividus and M. commoda showed that many different physiological pathways were affected, some of which were common to both species, giving insights about the mechanisms underpinning toxic responses.


Subject(s)
Embryo, Nonmammalian/drug effects , Magnetic Iron Oxide Nanoparticles/toxicity , Microalgae/drug effects , Nanoparticles/toxicity , Paracentrotus/drug effects , Transcriptome/drug effects , Water Pollutants, Chemical/toxicity , Zinc Oxide/toxicity , Animals , Embryo, Nonmammalian/metabolism , Gene Expression Profiling , Microalgae/growth & development , Microalgae/metabolism , Paracentrotus/genetics , Paracentrotus/growth & development
4.
J Nat Prod ; 81(6): 1301-1310, 2018 06 22.
Article in English | MEDLINE | ID: mdl-29792428

ABSTRACT

The structures of three new cyclic depsipeptides, tiahuramides A (1), B (2), and C (3), from a French Polynesian collection of the marine cyanobacterium Lyngbya majuscula are described. The planar structures of these compounds were established by a combination of mass spectrometry and 1D and 2D NMR experiments. Absolute configurations of natural and nonproteinogenic amino acids were determined through a combination of acid hydrolysis, derivitization with Marfey's reagent, and HPLC. The absolute configuration of hydroxy acids was confirmed by Mosher's method. The antibacterial activities of tiahuramides against three marine bacteria were evaluated. Compound 3 was the most active compound of the series, with an MIC of 6.7 µM on one of the three tested bacteria. The three peptides inhibit the first cell division of sea urchin fertilized eggs with IC50 values in the range from 3.9 to 11 µM. Tiahuramide B (2), the most potent compound, causes cellular alteration characteristics of apoptotic cells, blebbing, DNA condensation, and fragmentation, already at the first egg cleavage. The cytotoxic activity of compounds 1-3 was tested in SH-SY5Y human neuroblastoma cells. Compounds 2 and 3 showed an IC50 of 14 and 6.0 µM, respectively, whereas compound 1 displayed no toxicity in this cell line at 100 µM. To determine the type of cell death induced by tiahuramide C (3), SH-SY5Y cells were costained with annexin V-FITC and propidium iodide and analyzed by flow cytometry. The double staining indicated that the cytotoxicity of compound 3 in this cell line is produced by necrosis.


Subject(s)
Aquatic Organisms/chemistry , Cyanobacteria/chemistry , Depsipeptides/chemistry , Depsipeptides/pharmacology , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Cell Death/drug effects , Cell Line, Tumor , Cytotoxins/chemistry , Cytotoxins/pharmacology , Humans , Marine Biology/methods , Neuroblastoma/drug therapy
5.
PLoS One ; 11(2): e0149184, 2016.
Article in English | MEDLINE | ID: mdl-26886422

ABSTRACT

The perinucleolar compartment (PNC) is a subnuclear stucture forming predominantly in cancer cells; its prevalence positively correlates with metastatic capacity. Although several RNA-binding proteins have been characterized in PNC, the molecular function of this compartment remains unclear. Here we demonstrate that the cyclin-dependent kinase 13 (CDK13) is a newly identified constituent of PNC. CDK13 is a kinase involved in the regulation of gene expression and whose overexpression was found to alter pre-mRNA processing. In this study we show that CDK13 is enriched in PNC and co-localizes all along the cell cycle with the PNC component PTB. In contrast, neither the cyclins K and L, known to associate with CDK13, nor the potential kinase substrates accumulate in PNC. We further show that CDK13 overexpression increases PNC prevalence suggesting that CDK13 may be determinant for PNC formation. This result linked to the finding that CDK13 gene is amplified in different types of cancer indicate that this kinase can contribute to cancer development in human.


Subject(s)
CDC2 Protein Kinase/metabolism , Cell Compartmentation , Cell Nucleolus/metabolism , RNA Precursors/genetics , RNA Splicing/genetics , CDC2 Protein Kinase/chemistry , Cell Line, Tumor , Chromosomal Proteins, Non-Histone/metabolism , Cyclins/metabolism , Humans , Mitosis , Phosphoproteins/metabolism , Protein Structure, Tertiary , RNA Precursors/metabolism , RNA-Binding Proteins/metabolism , Nucleolin
6.
PLoS One ; 7(11): e46850, 2012.
Article in English | MEDLINE | ID: mdl-23144790

ABSTRACT

Proteolysis of sperm histones in the sea urchin male pronucleus is the consequence of the activation at fertilization of a maternal cysteine protease. We previously showed that this protein is required for male chromatin remodelling and for cell-cycle progression in the newly formed embryos. This enzyme is present in the nucleus of unfertilized eggs and is rapidly recruited to the male pronucleus after insemination. Interestingly, this cysteine-protease remains co-localized with chromatin during S phase of the first cell cycle, migrates to the mitotic spindle in M-phase and is re-located to the nuclei of daughter cells after cytokinesis. Here we identified the protease encoding cDNA and found a high sequence identity to cathepsin proteases of various organisms. A phylogenetical analysis clearly demonstrates that this sperm histone protease (SpHp) belongs to the cathepsin L sub-type. After an initial phase of ubiquitous expression throughout cleavage stages, SpHp gene transcripts become restricted to endomesodermic territories during the blastula stage. The transcripts are localized in the invaginating endoderm during gastrulation and a gut specific pattern continues through the prism and early pluteus stages. In addition, a concomitant expression of SpHp transcripts is detected in cells of the skeletogenic lineage and in accordance a pharmacological disruption of SpHp activity prevents growth of skeletal rods. These results further document the role of this nuclear cathepsin L during development.


Subject(s)
Cathepsin L/metabolism , Endopeptidases/metabolism , Histones/metabolism , Sea Urchins/embryology , Sea Urchins/enzymology , Amino Acid Sequence , Animals , Base Sequence , Cathepsin L/analysis , Cathepsin L/genetics , DNA, Complementary/genetics , Endopeptidases/analysis , Endopeptidases/genetics , Fertilization , Gene Expression Regulation, Developmental , Male , Molecular Sequence Data , Phylogeny , Sea Urchins/cytology , Sea Urchins/genetics , Sequence Alignment , Spermatozoa/metabolism
7.
Anticancer Res ; 32(10): 4287-97, 2012 Oct.
Article in English | MEDLINE | ID: mdl-23060549

ABSTRACT

BACKGROUND: Ianthelline was isolated from the Arctic sponge Stryphnus fortis. The structure of the compound has been previously described. However, only limited bioactivity data are available and little has been reported about the cytotoxic potential of ianthelline since its discovery. In addition, no study has so far aimed at identifying which cellular mechanisms are affected by ianthelline to generate cytotoxicity. MATERIALS AND METHODS: The cytotoxicity of ianthelline was tested against one non-malignant and ten malignant cell lines. The effects of ianthelline on key cell division events were studied in sea urchin embryos. Tyrosine kinase ABL (ABL), cAMP-dependent protein kinase A (PKA), protein-tyrosine phosphatase 1B (PTP1B), and a panel of 131 kinases were further tested for sensitivity to ianthelline. RESULTS: Ianthelline inhibits cellular growth in a dose- and time-dependent manner. Disturbed mitotic spindle formation was found in sea urchin embryos exposed to ianthelline. In addition, pronuclear migration and cytokinesis were severely inhibited. No effect on DNA synthesis was detectable. Ianthelline did not significantly inhibit ABL, but did provoke weak dose-dependent inhibition of PKA and PTP1B. It strongly inhibited the activity of 1 out of 131 tested kinases (to residual activity <10 %), with a Gini co-efficient of 0.22 for the degree of selectivity of kinase inhibition. CONCLUSION: These results demonstrate that ianthelline is a cytotoxic marine compound, which exerts its antiproliferative effects by several mechanisms that include inhibition of mitotic spindle formation and inhibition of protein kinase activity.


Subject(s)
Antineoplastic Agents/pharmacology , Biological Products/pharmacology , Imidazoles/pharmacology , Porifera/chemistry , Tyrosine/analogs & derivatives , Animals , Breast Neoplasms/drug therapy , Carcinoma/drug therapy , Cell Division/drug effects , Cell Line, Tumor , Cell Proliferation/drug effects , Colonic Neoplasms/drug therapy , Female , Humans , Leukemia/drug therapy , Melanoma/drug therapy , Protein Kinase Inhibitors/pharmacology , Sea Urchins/drug effects , Sea Urchins/embryology , Spindle Apparatus/drug effects , Tyrosine/pharmacology
8.
Mar Drugs ; 8(2): 347-58, 2010 Feb 23.
Article in English | MEDLINE | ID: mdl-20390109

ABSTRACT

Meroterpenes are compounds of mixed biogenesis, isolated from plants, microorganisms and marine invertebrates. We have previously isolated and determined the structure for a series of meroterpenes extracted from the ascidian Aplidium aff. densum. Here, we demonstrate the chemical synthesis of three of them and their derivatives, and evaluate their biological activity on two bacterial strains, on sea urchin eggs, and on cancerous and healthy human cells.


Subject(s)
Abietanes/pharmacology , Benzopyrans/pharmacology , Hydroquinones/pharmacology , Terpenes/pharmacology , Urochordata/chemistry , Abietanes/chemical synthesis , Animals , Anti-Bacterial Agents/pharmacology , Benzopyrans/chemical synthesis , Cell Proliferation/drug effects , Humans , Hydroquinones/chemical synthesis , Sea Urchins , Structure-Activity Relationship , Terpenes/chemical synthesis
9.
J Virol ; 82(14): 7155-66, 2008 Jul.
Article in English | MEDLINE | ID: mdl-18480452

ABSTRACT

The human immunodeficiency virus type 1 (HIV-1) Tat is a 14-kDa viral protein that acts as a potent transactivator by binding to the transactivation-responsive region, a structured RNA element located at the 5' end of all HIV-1 transcripts. Tat transactivates viral gene expression by inducing the phosphorylation of the C-terminal domain of RNA polymerase II through several Tat-activated kinases and by recruiting chromatin-remodeling complexes and histone-modifying enzymes to the HIV-1 long terminal repeat. Histone acetyltransferases, including p300 and hGCN5, not only acetylate histones but also acetylate Tat at lysine positions 50 and 51 in the arginine-rich motif. Acetylated Tat at positions 50 and 51 interacts with a specialized protein module, the bromodomain, and recruits novel factors having this particular domain, such as P/CAF and SWI/SNF. In addition to having its effect on transcription, Tat has been shown to be involved in splicing. In this study, we demonstrate that Tat interacts with cyclin-dependent kinase 13 (CDK13) both in vivo and in vitro. We also found that CDK13 increases HIV-1 mRNA splicing and favors the production of the doubly spliced protein Nef. In addition, we demonstrate that CDK13 acts as a possible restriction factor, in that its overexpression decreases the production of the viral proteins Gag and Env and subsequently suppresses virus production. Using small interfering RNA against CDK13, we show that silencing of CDK13 leads to a significant increase in virus production. Finally, we demonstrate that CDK13 mediates its effect on splicing through the phosphorylation of ASF/SF2.


Subject(s)
CDC2 Protein Kinase/metabolism , HIV-1/growth & development , RNA Splicing , RNA, Messenger/metabolism , RNA, Viral/metabolism , Virus Replication/physiology , tat Gene Products, Human Immunodeficiency Virus/metabolism , HeLa Cells , Humans , Immunoprecipitation , Protein Binding
10.
J Cell Physiol ; 216(3): 790-5, 2008 Sep.
Article in English | MEDLINE | ID: mdl-18425772

ABSTRACT

We have previously reported that sperm histones (SpH) degradation after fertilization is catalyzed by a cystein-protease (SpH-protease). Its inhibition blocks the degradation of SpH in vivo and also aborts sea urchin development at the initial embryonic cell cycles. It remains unknown if this effect is a consequence of the persistence of SpH on zygotic chromatin, or if this protease is involved per-se in the progression of the embryonic cell cycles. To discriminate among these two options we have inhibited this protease at a time when male chromatin remodeling was completed and the embryos were engaged in the second cell cycle of the cleavage divisions. The role of this enzyme in cell cycle was initially analyzed by immuno-inhibiting its SpH degrading activity in one of the two blastomeres after the initial cleavage division, while the other blastomere was used as a control. We found that in the blastomere injected with the anti-SpH-protease antibodies the cytokinesis was arrested, the chromatin failed to decondense after mitosis and BrdU incorporation into DNA was blocked. Since the N-terminal sequence and the SpH protease was homologous to the cathepsin L (Cat L) family of proteases, we subsequently investigated if the deleterious effect of the inhibition of this protease is related to its Cat L activity. In this context we analyzed the effect of Cat L inhibitor I (Z-Phe-Phe-CH(2)F) on embryonic development. We found that the addition of 100 uM of this inhibitor to the embryos harvested at the time of the initial cleavage division (80 min p.i.) mimics perfectly the effects of the immuno-inhibition of this enzyme obtained by microinjecting the anti-SpH-protease antibodies. Taken together these results indicate that the activity of this protease is required for embryonic cell cycle progression. Interestingly, we observed that when this protease was inhibited the chromatin decondensation after mitosis was abolished indicating that the inhibition of this enzyme affects chromosomes decondensation after mitosis.


Subject(s)
Cathepsins/antagonists & inhibitors , Cell Division/physiology , Chromosomes/metabolism , Cysteine Proteinase Inhibitors/metabolism , Mitosis/physiology , Sea Urchins , Animals , Cathepsin L , Cathepsins/metabolism , Cysteine Endopeptidases/metabolism , DNA Replication , Male , Sea Urchins/embryology , Sea Urchins/genetics
11.
J Soc Biol ; 201(1): 31-40, 2007.
Article in French | MEDLINE | ID: mdl-17762822

ABSTRACT

Sea urchin is a classical research model system in developmental biology; moreover, the external fertilization and growth of embryos, their rapid division cycle, their transparency and the accessibility of these embryos to molecular visualization methods, made them good specimens to analyze the regulatory mechanisms of cell division. These features as well as the phylogenetic position of sea urchin, close to vertebrates but in an outgroup within the deuterostomes, led scientists working on this model to sequence the genome of the species S. purpuratus. The genome contains a full repertoire of cell cycle control genes. A comparison of this toolkit with those from vertebrates, nematodes, drosophila, as well as tunicates, provides new insight into the evolution of cell cycle control. While some gene subtypes have undergone lineage-specific expansions in vertebrates (i.e. cyclins, mitotic kinases,...), others seem to be lost in vertebrates, for instance the novel cyclin B identified in S. purpuratus. On the other hand, some genes which were previously thought to be vertebrate innovations, are also found in sea urchins (i.e. MCM9). To note is also the absence of cell cycle inhibitors of the INK type, which are apparently confined to vertebrates. The uncovered genomic repertoire of cell-cycle regulators will thus provide molecular tools that should further enhance future research on cell cycle control and developmental regulation in this model.


Subject(s)
Cell Cycle/physiology , Embryo, Nonmammalian/cytology , Genome , Sea Urchins/embryology , Sea Urchins/genetics , Animals , Cell Division , Mice , Models, Biological , Phylogeny , Sea Urchins/classification , Species Specificity , Vertebrates/genetics
12.
J Exp Zool B Mol Dev Evol ; 308(4): 484-93, 2007 Jul 15.
Article in English | MEDLINE | ID: mdl-17520703

ABSTRACT

The cephalochordate amphioxus (Branchiostoma sp.) is an important animal model for studying the evolution of chordate developmental mechanisms. Obtaining amphioxus embryos is a key step for these studies. It has been shown that an increase of 3-4 degrees C in water temperature triggers spawning of the European amphioxus (Branchiostoma lanceolatum) in captivity, however, very little is known about the natural spawning behavior of this species in the field. In this work, we have followed the spawning behavior of the European amphioxus during two spawning seasons (2004 and 2005), both in the field and in captivity. We show that animals in the field spawn approximately from mid-May through early July, but depending on the year, they show different patterns of spawning. Thus, even if temperature has a critical role in the induction of the spawning in captivity, it is not the major factor in the field. Moreover, we report some improvements on the methodology for inducing spawning in captivity (e.g. in maintenance, light cycle control and induction of spawning in a laboratory without running sea water system). These studies have important implications for amphioxus animal husbandry and for improving laboratory techniques to develop amphioxus as an experimental animal model.


Subject(s)
Animal Husbandry , Chordata, Nonvertebrate/physiology , Animals , Reproduction
13.
Chem Biol Interact ; 168(2): 106-16, 2007 Jun 30.
Article in English | MEDLINE | ID: mdl-17448456

ABSTRACT

Methoxyconidiol is a meroterpene previously extracted from the ascidian Aplidium aff. densum [A. Simon-Levert, A. Arrault, N. Bontemps-Subielos, C. Canal, B. Banaigs. Meroterpenes from the ascidian Aplidium aff. densum, J. Nat. Prod. 68 (2005) 1412-1415]. In the present work we investigated its antimitotic effect on eukaryotic cells by using a bioassay based on the sea urchin early embryo. This bioassay has been successfully used to evaluate the efficacy of antiproliferative agents and to rapidly determine the affected cell cycle phase. We demonstrated that methoxyconidiol inhibits the cleavages of sea urchin Sphaerechinus granularis and Paracentrotus lividus fertilized eggs. This meroterpene disrupts M-phase progression and completely blocks cytokinesis without having any effect on DNA replication. The treatment severely disturbs the establishment of a mitotic spindle, most likely by affecting microtubule dynamics. Moreover, while the cell cycle regulatory kinase cyclin B/CDK1 is activated, cyclin B proteolysis is inhibited, impeding the output of M-phase. This characteristic cell cycle arrest induced by methoxyconidiol in sea urchin eggs emphasizes the interest for this drug as a putative antiproliferative agent for tumor cells.


Subject(s)
Abietanes/pharmacology , Antimitotic Agents/pharmacology , Mitosis/drug effects , Animals , Blotting, Western , CDC2 Protein Kinase/metabolism , Cell Cycle/drug effects , Cyclin B/metabolism , DNA Replication/drug effects , Embryo, Nonmammalian/drug effects , Female , Male , Microscopy, Fluorescence , Microtubules/drug effects , Microtubules/metabolism , Sea Urchins/drug effects , Sea Urchins/embryology , Spindle Apparatus/drug effects , Urochordata/chemistry
14.
Biochem Biophys Res Commun ; 354(3): 735-40, 2007 Mar 16.
Article in English | MEDLINE | ID: mdl-17261272

ABSTRACT

Due to the strong sequence homology it has been suggested that CDC2L5 and CDK12 belong to a high molecular weight subfamily of CDC2 family with PITAI/VRE motifs [F. Marques, J.L. Moreau, G. Peaucellier, J.C. Lozano, P. Schatt, A. Picard, I. Callebaut, E. Perret, A.M. Geneviere, A new subfamily of high molecular mass CDC2-related kinases with PITAI/VRE motifs, Biochem. Biophys. Res. Commun. 279 (2000) 832-837]. Recently, we reported that CDK12 interacts with L-type cyclins and is involved in alternative splicing regulation [H.-H. Chen, Y.-C. Wang, M.-J. Fann, Identification and characterization of the CDK12/Cyclin L1 complex involved in alternative splicing regulation, Mol. Cel. Biol. 26 (2006) 2736-2745]. Here, we provide evidence that CDC2L5 also interacts with L-type cyclins and thus rename it as cyclin-dependent kinase 13 (CDK13). The kinase domain of CDK13 is sufficient to bind the cyclin domains of L-type cyclins. Moreover, CDK13 and L-type cyclins modulate each other's subcellular localization. When CDK13 and an E1a minigene reporter construct were over-expressed in HEK293T cells, CDK13 alters the splicing pattern of E1a transcripts in a dose-dependent manner. Similar to effects of CDK12, effects of CDK13 on splicing pattern are counteracted by SF2/ASF and SC35. These findings strengthen CDK12 and CDK13 as a subfamily of cyclin-dependent kinases that regulate alternative splicing.


Subject(s)
Alternative Splicing/physiology , CDC2 Protein Kinase/metabolism , Cyclins/metabolism , Alternative Splicing/genetics , Amino Acid Sequence , Blotting, Western , CDC2 Protein Kinase/chemistry , CDC2 Protein Kinase/genetics , Cells, Cultured , Cyclins/chemistry , Cyclins/genetics , Humans , Molecular Sequence Data , Molecular Weight , RNA, Messenger/genetics , RNA, Messenger/metabolism
15.
Dev Biol ; 300(1): 238-51, 2006 Dec 01.
Article in English | MEDLINE | ID: mdl-17078944

ABSTRACT

A search of the Strongylocentrotus purpuratus genome for genes associated with cell cycle control and DNA metabolism shows that the known repertoire of these genes is conserved in the sea urchin, although with fewer family members represented than in vertebrates, and with some cases of echinoderm-specific gene diversifications. For example, while homologues of the known cyclins are mostly encoded by single genes in S. purpuratus (unlike vertebrates, which have multiple isoforms), there are additional genes encoding novel cyclins of the B and K/L types. Almost all known cyclin-dependent kinases (CDKs) or CDK-like proteins have an orthologue in S. purpuratus; CDK3 is one exception, whereas CDK4 and 6 are represented by a single homologue, referred to as CDK4. While the complexity of the two families of mitotic kinases, Polo and Aurora, is close to that found in the nematode, the diversity of the NIMA-related kinases (NEK proteins) approaches that of vertebrates. Among the nine NEK proteins found in S. purpuratus, eight could be assigned orthologues in vertebrates, whereas the ninth is unique to sea urchins. Most known DNA replication, DNA repair and mitotic checkpoint genes are also present, as are homologues of the pRB (two) and p53 (one) tumor suppressors. Interestingly, the p21/p27 family of CDK inhibitors is represented by one homologue, whereas the INK4 and ARF families of tumor suppressors appear to be absent, suggesting that these evolved only in vertebrates. Our results suggest that, while the cell cycle control mechanisms known from other animals are generally conserved in sea urchin, parts of the machinery have diversified within the echinoderm lineage. The set of genes uncovered in this analysis of the S. purpuratus genome should enhance future research on cell cycle control and developmental regulation in this model.


Subject(s)
Cell Cycle/genetics , DNA/metabolism , Genome , Sea Urchins/classification , Sea Urchins/genetics , Amino Acid Sequence , Animals , Conserved Sequence , Cyclin-Dependent Kinases/genetics , DNA/genetics , Molecular Sequence Data , Phylogeny , Protein Kinases/genetics , Sea Urchins/cytology , Sequence Alignment , Sequence Homology, Amino Acid
16.
Dev Biol ; 300(1): 180-93, 2006 Dec 01.
Article in English | MEDLINE | ID: mdl-17027740

ABSTRACT

This paper reports a preliminary in silico analysis of the sea urchin kinome. The predicted protein kinases in the sea urchin genome were identified, annotated and classified, according to both function and kinase domain taxonomy. The results show that the sea urchin kinome, consisting of 353 protein kinases, is closer to the Drosophila kinome (239) than the human kinome (518) with respect to total kinase number. However, the diversity of sea urchin kinases is surprisingly similar to humans, since the urchin kinome is missing only 4 of 186 human subfamilies, while Drosophila lacks 24. Thus, the sea urchin kinome combines the simplicity of a non-duplicated genome with the diversity of function and signaling previously considered to be vertebrate-specific. More than half of the sea urchin kinases are involved with signal transduction, and approximately 88% of the signaling kinases are expressed in the developing embryo. These results support the strength of this nonchordate deuterostome as a pivotal developmental and evolutionary model organism.


Subject(s)
Protein Kinases/genetics , Sea Urchins/growth & development , Sea Urchins/genetics , Animals , Embryo, Nonmammalian , Gene Expression Regulation, Developmental , Phosphorylation , Phylogeny , Protein Kinases/classification , Sea Urchins/classification , Sea Urchins/embryology , Signal Transduction
17.
J Cell Sci ; 119(Pt 17): 3491-501, 2006 Sep 01.
Article in English | MEDLINE | ID: mdl-16912079

ABSTRACT

Unfertilized sea urchin eggs that are arrested at G1 phase after completion of meiosis contain a highly phosphorylated mitogen-activated protein (MAP) kinase (MAPK), the ERK-like protein (ERK-LP). Several data including our previous results show that ERK-LP is inactivated after fertilization, which agrees with results obtained in other species including Xenopus, starfish and mammals. The question is to elucidate the function of a high MAPK activity in sea urchin eggs. We report here that dephosphorylation of ERK-LP with very low concentrations of two MEK inhibitors, PD98059 or U0126, triggers entry into mitosis. Under these conditions, recurrent oscillations of the phosphorylation of ERK-LP and of a tyrosine residue in Cdc2 occur, and the intracellular Ca2+ level (Ca2+ i) progressively and slowly increases. Nuclear envelope breakdown and all mitotic events initiated after dephosphorylation of ERK-LP are inhibited when changes in Ca2+ i are prevented; however, they are independent of the intracellular pH. These results suggest that inactivation of a MEK-ERK pathway, normally induced after fertilization of sea urchin eggs, triggers entry into mitosis by altering Ca2+ i but cannot trigger full DNA replication. We discuss the hypothesis that neither inactivation nor activation of a MEK-ERK pathway is required for S phase completion in sea urchin egg.


Subject(s)
Calcium/metabolism , MAP Kinase Signaling System/physiology , Mitogen-Activated Protein Kinases , Oocytes , S Phase/physiology , Animals , Butadienes/metabolism , DNA Replication , Enzyme Inhibitors/metabolism , Flavonoids/metabolism , Maturation-Promoting Factor/metabolism , Mitogen-Activated Protein Kinases/antagonists & inhibitors , Mitogen-Activated Protein Kinases/metabolism , Nitriles/metabolism , Oocytes/cytology , Oocytes/enzymology , Oocytes/physiology , Sea Urchins
18.
J Cell Biochem ; 99(3): 890-904, 2006 Oct 15.
Article in English | MEDLINE | ID: mdl-16721827

ABSTRACT

The human CDC2L5 gene encodes a protein of unknown physiological function. This protein is closely related to the cyclin-dependent kinase (Cdks) family and contains an arginine/serine-rich (RS) domain. The Cdks were first identified as crucial regulators of cell-cycle progression, more recently they were found to be involved in transcription and mRNA processing. RS domains are mainly present in proteins regulating pre-mRNA splicing, suggesting CDC2L5 having a possible role in this process. In this study, we demonstrate that CDC2L5 is located in the nucleoplasm, at a higher concentration in speckles, the storage sites for splicing factors. Furthermore, this localization is dependent on the presence of the N-terminal sequence including the RS domain. Then, we report that CDC2L5 directly interacts with the ASF/SF2-associated protein p32, a protein involved in splicing regulation. Overexpression of CDC2L5 constructs disturbs constitutive splicing and switches alternative splice site selection in vivo. These results argue in favor of a functional role of the CDC2L5 kinase in splicing regulation.


Subject(s)
CDC2 Protein Kinase/metabolism , Nuclear Proteins/metabolism , Protein Subunits/metabolism , RNA Precursors/metabolism , RNA Splicing , Animals , CDC2 Protein Kinase/genetics , Cell Line , Cell Nucleus/metabolism , Cell Nucleus/ultrastructure , Humans , Lymphotoxin-alpha/genetics , Lymphotoxin-alpha/metabolism , Mice , Nuclear Proteins/genetics , Protein Structure, Tertiary , Protein Subunits/genetics , RNA-Binding Proteins , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Serine-Arginine Splicing Factors , Two-Hybrid System Techniques
19.
J Cell Biochem ; 98(2): 335-42, 2006 May 15.
Article in English | MEDLINE | ID: mdl-16408295

ABSTRACT

We reported recently that the inhibition of cysteine-proteases with E-64-d disturbs DNA replication and prevents mitosis of the early sea urchin embryo. Since E-64-d is a rather general inhibitor of thiol-proteases, to specifically target the cysteine-protease previously identified in our laboratory as the enzyme involved in male chromatin remodeling after fertilization, we injected antibodies against the N-terminal sequence of this protease that were able to inhibit the activity of this enzyme in vitro. We found that injection of these antibodies disrupts the initial zygotic cell cycle. As shown in this report in injected zygotes a severe inhibition of DNA replication was observed, the mitotic spindle was not correctly bipolarized the embryonic development was aborted at the initial cleavage division. Consequently, the injection of these antibodies mimics perfectly the effects previously described for E-64-d, indicating that the effects of this inhibitor rely mainly on the inhibition of the cysteine-protease involved in male chromatin remodeling after fertilization. These results further support the crucial role of this protease in early embryonic development.


Subject(s)
Cell Cycle/immunology , Chromatin Assembly and Disassembly/physiology , Cysteine Endopeptidases/immunology , Cysteine Proteinase Inhibitors/immunology , Sea Urchins/embryology , Animals , Antibodies/pharmacology , Cell Cycle/drug effects , Chromatin Assembly and Disassembly/drug effects , Cysteine Endopeptidases/metabolism , Cysteine Proteinase Inhibitors/pharmacology , DNA Replication/drug effects , Embryonic Development/drug effects , Embryonic Development/physiology , Fertilization/physiology , Immunoglobulins/drug effects , Leucine/analogs & derivatives , Leucine/pharmacology , Male , Microinjections/methods , Mitosis/drug effects , Zygote/cytology
20.
J Cell Physiol ; 204(2): 693-703, 2005 Aug.
Article in English | MEDLINE | ID: mdl-15795898

ABSTRACT

Recent findings suggested that the role of cysteine proteases would not be limited to protein degradation in lysosomes but would also play regulatory functions in more specific cell mechanisms. We analyzed here the role of these enzymes in the control of cell cycle during embryogenesis. The addition of the potent cysteine protease inhibitor E64d to newly fertilized sea urchin eggs disrupted cell cycle progression, affecting nuclear as well as cytoplasmic characteristic events. Monitoring BrdU incorporation in E64d treated eggs demonstrated that DNA replication is severely disturbed. Moreover, this drug treatment inhibited male histones degradation, a step that is necessary for sperm chromatin remodeling and precedes the initiation of DNA replication in control eggs. This inhibition likely explains the DNA replication disturbance and suggests that S phase initiation requires cysteine protease activity. In turn, activation of the DNA replication checkpoint could be responsible for the consecutive block of nuclear envelope breakdown (NEB). However, in sea urchin early embryos this checkpoint doesn't control the mitotic cytoplasmic events that are not tightly coupled with NEB. Thus the fact that microtubule spindle is not assembled and cyclin B-cdk1 not activated under E64d treatment more likely rely on a distinct mechanism. Immunofluorescence experiments indicated that centrosome organization was deficient in absence of cysteine protease activity. This potentially accounts for mitotic spindle disruption and for cyclin B mis-localization in E64d treated eggs. We conclude that cysteine proteases are essential to trigger S phase and to promote M phase entry in newly fertilized sea urchin eggs.


Subject(s)
Cell Cycle/drug effects , Cysteine Proteinase Inhibitors/pharmacology , DNA Replication/drug effects , Leucine/analogs & derivatives , Mitosis/drug effects , Sea Urchins/embryology , Acrylates/pharmacology , Animals , CDC2 Protein Kinase/metabolism , Calpain/antagonists & inhibitors , Cathepsins/antagonists & inhibitors , Cell Nucleus/drug effects , Cyclin B/metabolism , Cytoplasm/drug effects , Embryo, Nonmammalian/cytology , Embryo, Nonmammalian/metabolism , Leucine/pharmacology , Tissue Distribution
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