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1.
Inorg Chem ; 62(8): 3629-3636, 2023 Feb 27.
Article in English | MEDLINE | ID: mdl-36780272

ABSTRACT

Vacancy-ordered halide perovskites have received great interest in optoelectronic applications. In this work, we report the novel inorganic halide Cs10MnSb6Cl30 with a distinctive 10H (10-layer hexagonal) perovskite polytype structure with (hcccc)2 stacking. Cs10MnSb6Cl30 has 30% B-site vacancies ordered at both corner- and face-sharing sites, resulting in [MnSb6Cl30]10-n columns, i.e., a reduction of octahedral connectivity to 1D. This results in enhanced photoluminescence in comparison to the previously reported 25% vacancy-ordered 3C polytype Cs4MnSb2Cl12 with 2D connectivity. This demonstrates not only the existence of the 10H perovskite structure in halides but also demonstrates the degree of B-site deficiency and stacking sequence variation as a direction to tune the optical properties of perovskite polytypes via vacancy rearrangements.

2.
Chem Mater ; 34(5): 2458-2467, 2022 Mar 08.
Article in English | MEDLINE | ID: mdl-35431437

ABSTRACT

Two-dimensional (2D) organic-inorganic hybrid copper halide perovskites have drawn tremendous attention as promising multifunctional materials. Herein, by incorporating ortho-, meta-, and para-chlorine substitutions in the benzylamine structure, we first report the influence of positional isomerism on the crystal structures of chlorobenzylammonium copper(II) chloride perovskites A2CuCl4. 2D polar ferromagnets (3-ClbaH)2CuCl4 and (4-ClbaH)2CuCl4 (ClbaH+ = chlorobenzylammonium) are successfully obtained. They both adopt a polar monoclinic space group Cc at room temperature, displaying significant differences in crystal structures. In contrast, (2-ClbaH)2CuCl4 adopts a centrosymmetric space group P 21/ c at room temperature. This associated structural evolution successfully enhances the physical properties of the two polar compounds with high thermal stability, discernible second harmonic generation (SHG) signals, ferromagnetism, and narrow optical band gaps. These findings demonstrate that the introduction of chlorine atoms into the interlayer organic species is a powerful tool to tune crystal symmetries and physical properties, and this inspires further exploration of designing high-performance multifunctional copper-based materials.

3.
Inorg Chem ; 61(7): 3230-3239, 2022 Feb 21.
Article in English | MEDLINE | ID: mdl-35138839

ABSTRACT

We present the influence of positional isomerism on the crystal structure of fluorobenzylammonium copper(II) chloride perovskites A2CuCl4 by incorporating ortho-, meta-, and para-fluorine substitution in the benzylamine structure. Two-dimensional (2D) polar ferromagnet (3-FbaH)2CuCl4 (3-FbaH+ = 3-fluorobenzylammonium) is successfully obtained, which crystallizes in a polar orthorhombic space group Pca21 at room temperature. In contrast, both (2-FbaH)2CuCl4 (2-FbaH+ = 2-fluorobenzylammonium) and (4-FbaH)2CuCl4 (4-FbaH+ = 4-fluorobenzylammonium) crystallize in centrosymmetric space groups P21/c and Pnma at room temperature, respectively, displaying significant differences in crystal structures. These differences indicate that the position of the fluorine atom is a driver for the polar behavior in (3-FbaH)2CuCl4. Preliminary magnetic measurements confirm that these three perovskites possess dominant ferromagnetic interactions within the inorganic [CuCl4]∞ layers. Therefore, (3-FbaH)2CuCl4 is a polar ferromagnet, with potential as a type I multiferroic. This work is expected to promote further development of high-performance 2D copper(II) halide perovskite multiferroic materials.

4.
Trials ; 22(1): 846, 2021 Nov 25.
Article in English | MEDLINE | ID: mdl-34823572

ABSTRACT

BACKGROUND: Gait difficulties in Parkinson's disease have been related to problems shifting the center of gravity forward. We previously showed reduced forward stepping latencies for people with Parkinson's disease after one session of adaptation to upward visual shifts, which produces downward motor after-effects and potentially shifts the center of gravity forward. Here we tested if repeated prism adaptation improved gait and postural control in Parkinson's disease through a parallel, double-blind, randomized, sham-controlled trial. METHODS: We recruited participants with idiopathic Parkinson's disease aged 40-85 and meeting any one of three clinical criteria: (1) Hoehn and Yahr Stage II.5-IV; (2) scoring > 0 on the gait, freezing of gait, and/or postural stability items of the Movement Disorder Society Unified Parkinson's Disease Rating Scale; or (3) Timed Up and Go > 12 s. Sealed envelope style randomization allocated participants to two weeks of twice-daily prism adaptation or sham treatment. Participants, care givers, and those assessing the outcomes were blinded to group assignment. Primary outcomes were changes in postural control measured using the Berg Balance Scale and the Limits of Stability, Sensory Organization, and Motor Control tests from the Smart EquiTest system. Secondary outcomes included other physiotherapy and questionnaire measures. Outcomes were assessed at the Dartmouth Hitchcock Medical Center immediately before and after the treatment period, with further long-term postal follow-up over 3 months. Outcomes were analyzed using analyses of variance with follow-up t tests. RESULTS: Eighteen participants were allocated to undergo prism adaptation, of which sixteen were analyzed. Thirteen participants were allocated to undergo sham treatment, and all were analyzed. The prism adaptation group showed increased forward stepping velocity on the Limits of Stability test (pre: M=2.33, SEM=0.24; post: M=2.88, SEM=0.26; t(15)=3.2, p=.005, d=.819). The sham group showed no such change (pre: M=2.13, SEM=0.22; 1d post: M=2.24, SEM=0.22; t(13)=.636, p=.537, d=.176). However, there were no group differences for any other outcome measures and no indications that prism adaptation produced functional improvements in posture, gait, or activities of daily living. CONCLUSIONS: Prism adaptation does not improve gait or postural control in Parkinson's disease. TRIAL REGISTRATION: ClinicalTrials.gov NCT02380859 . Registered prospectively on 5 March 2015.


Subject(s)
Gait Disorders, Neurologic , Parkinson Disease , Activities of Daily Living , Exercise Therapy , Gait , Humans , Parkinson Disease/diagnosis , Parkinson Disease/therapy , Postural Balance , Posture
5.
Inorg Chem ; 60(15): 11014-11024, 2021 Aug 02.
Article in English | MEDLINE | ID: mdl-34242021

ABSTRACT

We present three new hybrid copper(II) chloride layered perovskites of generic composition ACuCl4 or A2CuCl4, which exhibit three distinct structure types. (m-PdH2)CuCl4 (m-PdH22+ = protonated m-phenylenediamine) adopts a Dion-Jacobson (DJ)-like layered perovskite structure type and exhibits a very large axial thermal contraction effect upon heating, as revealed via variable-temperature synchrotron X-ray powder diffraction (SXRD). This can be attributed to the contraction of an interlayer block, via a slight repositioning of the m-PdH22+ moiety. (3-AbaH)2CuCl4 (3-AbaH+ = protonated 3-aminobenzoic acid) and (4-AbaH)2CuCl4 (4-AbaH+ = protonated 4-aminobenzoic acid) possess the same generic formula as Ruddlesden-Popper (RP) layered perovskites, A2BX4, but adopt different structures. (4-AbaH)2CuCl4 adopts a near-staggered structure type, whereas (3-AbaH)2CuCl4 adopts a near-eclipsed structure type, which resembles the DJ rather than the RP family. (3-AbaH)2CuCl4 also displays static disorder of the [CuCl4]∞ layers. The crystal structures of each are discussed in terms of the differing nature of the templating molecular species, and these are compared to related layered perovskites. Preliminary magnetic measurements are reported, suggesting dominant ferromagnetic interactions.

6.
Parkinsons Dis ; 2021: 5541760, 2021.
Article in English | MEDLINE | ID: mdl-34306610

ABSTRACT

INTRODUCTION: Parkinson's disease (PD) is an age-related neurodegenerative disease likely caused by complex interactions between genetic and environmental risk factors. Exposure to pesticides, toxic metals, solvents, and history of traumatic brain injury have been implicated as environmental risk factors for PD, underscoring the importance of identifying risk factors associated with PD across different communities. METHODS: We conducted a questionnaire-based case-control study in a rural area on the New Hampshire/Vermont border, enrolling PD patients and age- and sex-matched controls from the general population between 2017 and 2020. We assessed frequent participation in a variety of recreational and occupational activities and surveyed potential chemical exposures. RESULTS: Suffering from "head trauma or a concussion" prior to diagnosis was associated with a fourfold increased risk of PD. Adjustment for head trauma negated any risk of participation in "strenuous athletic activities." We observed a 2.7-fold increased risk of PD associated with activities involving lead (adjusted p=0.038). CONCLUSION: Implicating these factors in PD risk favors public health efforts in exposure mitigation while also motivating future work mechanisms and intervention opportunities.

7.
NPJ Parkinsons Dis ; 7(1): 2, 2021 Jan 04.
Article in English | MEDLINE | ID: mdl-33398042

ABSTRACT

Parkinson's disease (PD) is a neurodegenerative disorder characterized by motor and non-motor symptoms and loss of dopaminergic neurons of the substantia nigra. Inflammation and cell death are recognized aspects of PD suggesting that strategies to monitor and modify these processes may improve the management of the disease. Inflammasomes are pro-inflammatory intracellular pattern recognition complexes that couple these processes. The NLRP3 inflammasome responds to sterile triggers to initiate pro-inflammatory processes characterized by maturation of inflammatory cytokines, cytoplasmic membrane pore formation, vesicular shedding, and if unresolved, pyroptotic cell death. Histologic analysis of tissues from PD patients and individuals with nigral cell loss but no diagnosis of PD identified elevated expression of inflammasome-related proteins and activation-related "speck" formation in degenerating mesencephalic tissues compared with controls. Based on previous reports of circulating inflammasome proteins in patients suffering from heritable syndromes caused by hyper-activation of the NLRP3 inflammasome, we evaluated PD patient plasma for evidence of inflammasome activity. Multiple circulating inflammasome proteins were detected almost exclusively in extracellular vesicles indicative of ongoing inflammasome activation and pyroptosis. Analysis of plasma obtained from a multi-center cohort identified elevated plasma-borne NLRP3 associated with PD status. Our findings are consistent with others indicating inflammasome activity in neurodegenerative disorders. Findings suggest mesencephalic inflammasome protein expression as a histopathologic marker of early-stage nigral degeneration and suggest plasma-borne inflammasome-related proteins as a potentially useful class of biomarkers for patient stratification and the detection and monitoring of inflammation in PD.

8.
Dalton Trans ; 48(38): 14461-14466, 2019 Oct 14.
Article in English | MEDLINE | ID: mdl-31524905

ABSTRACT

A family of hybrid Perovskite-oxalates ("Perovzalates") of general composition AILi3MII(C2O4)3 (A = K+, Rb+, Cs+; M = Fe2+, Co2+, Ni2+) are presented. All eight new compounds are isostructural with the previously reported examples NH4Li3Fe(C2O4)3 and KLi3Fe(C2O4)3, crystallising in the rhombohedral space group R3[combining macron]c, with a∼11.3-11.6 Å, c∼14.8-15.2 Å. In contrast to other families of "hybrid perovskites" such as the formates, these compounds can be regarded as closer structural relatives to inorganic (oxide) perovskites, in the sense that they contain direct linkages of the octahedral sites via bridging oxygen atoms (of the oxalate groups). It is of note, therefore, that monoatomic cations as large as Cs+ can be incorporated into the perovskite-like A sites of this structure type, which is not feasible in traditional ABO3 perovskites; indeed CsLi3Ni(C2O4)3 appears to exhibit the 'mostly tightly bound' 12-coordinate Cs+ ion in an oxide environment, according to a bond valence analysis.

9.
Dalton Trans ; 48(15): 4784-4787, 2019 Apr 09.
Article in English | MEDLINE | ID: mdl-30888371

ABSTRACT

The title compound is the first example of a layered fluoroperovskite containing an interlayer organic cation. Preliminary magnetic characterisation is reported, and structural relationships to related layered perovskites are discussed.

10.
NPJ Parkinsons Dis ; 4: 24, 2018.
Article in English | MEDLINE | ID: mdl-30131971

ABSTRACT

Neuroinflammation is a well-characterized pathophysiology occurring in association with the progression of Parkinson's disease. Characterizing the cellular and molecular basis of neuroinflammation is critical to understanding its impact on the incidence and progression of PD and other neurologic disorders. Inflammasomes are intracellular pro-inflammatory pattern-recognition receptors capable of initiating and propagating inflammation. These cellular complexes are well characterized in the innate immune system and activity of the NLRP3 inflammasome has been reported in microglia. NLRP3 inflammasome activity has been associated with Alzheimer's disease, and recent reports, from our laboratory and others, indicate that Nlrp3 is required for neuroinflammation and nigral cell loss in animal models of PD. NLRP3 has not yet been characterized in PD patients. Here we characterize NLRP3 in PD using immunohistologic and genetic approaches. Histologic studies revealed elevated NLRP3 expression in mesencephalic neurons of PD patients. Analysis of exome sequencing data for genetic variation of NLRP3 identified multiple single-nucleotide polymorphisms (SNPs) including rs7525979 that was associated with a significantly reduced risk of developing PD. Mechanistic studies conducted in HEK293 cells indicated that the synonymous SNP, NLRP3 rs7525979, alters the efficiency of NLRP3 translation impacting NLRP3 protein stability, ubiquitination state, and solubility. These data provide evidence that dopaminergic neurons are a cell-of-origin for inflammasome activity in PD and are consistent with recent animal studies, suggesting that inflammasome activity may impact the progression of PD.

11.
J Neurol Sci ; 377: 137-143, 2017 Jun 15.
Article in English | MEDLINE | ID: mdl-28477684

ABSTRACT

BACKGROUND: Recognizing the factors associated with falling in Parkinson's disease (PD) would improve identification of at-risk individuals. OBJECTIVE: To examine frequency of falling and baseline characteristics associated with falling in PD using the National Institute of Neurological Disorders and Stroke (NINDS) Exploratory Trials in PD Long-term Study-1 (NET-PD LS-1) dataset. METHODS: The LS-1 database included 1741 early treated PD subjects (median 4year follow-up). Baseline characteristics were tested for a univariate association with post-baseline falling during the trial. Significant variables were included in a multivariable logistic regression model. A separate analysis using a negative binomial model investigated baseline factors on fall rate. RESULTS: 728 subjects (42%) fell during the trial, including at baseline. A baseline history of falls was the factor most associated with post-baseline falling. Men had lower odds of post-baseline falling compared to women, but for men, the probability of a post-baseline fall increased with age such that after age 70, men and women had similar odds of falling. Other baseline factors associated with a post-baseline fall and increased fall rate included the Unified PD Rating Scale (UPDRS) Activities of Daily Living (ADL) score, total functional capacity (TFC), baseline ambulatory capacity score and dopamine agonist monotherapy. CONCLUSION: Falls are common in early treated PD. The biggest risk factor for falls in PD remains a history of falling. Measures of functional ability (UPDRS ADL, TFC) and ambulatory capacity are novel clinical risk factors needing further study. A significant age by sex interaction may help to explain why age has been an inconsistent risk factor for falls in PD.


Subject(s)
Accidental Falls , Dopamine Agents/therapeutic use , Parkinson Disease/drug therapy , Parkinson Disease/physiopathology , Activities of Daily Living , Aged , Cohort Studies , Datasets as Topic/statistics & numerical data , Disease Progression , Female , Humans , Logistic Models , Male , Middle Aged , Risk Factors , Severity of Illness Index , Time Factors
12.
Nano Lett ; 16(8): 5291-7, 2016 08 10.
Article in English | MEDLINE | ID: mdl-27398653

ABSTRACT

For spintronic devices excited by a sudden magnetic or optical perturbation, the torque acting on the magnetization plays a key role in its precession and damping. However, the torque itself can be a dynamical quantity via the time-dependent anisotropies of the system. A challenging problem for applications is then to disentangle the relative importance of various sources of anisotropies in the dynamical torque, such as the dipolar field, the crystal structure or the shape of the particular interacting magnetic nanostructures. Here, we take advantage of a range of colloidal cobalt ferrite nanocubes assembled in 2D thin films under controlled magnetic fields to demonstrate that the phase, ϕPrec, of the precession carries a strong signature of the dynamical anisotropies. Performing femtosecond magneto-optics, we show that ϕPrec displays a π-shift for a particular angle θH of an external static magnetic field, H. θH is controlled with the cobalt concentration, the laser intensity, as well as the interparticle interactions. Importantly, it is shown that the shape anisotropy, which strongly departs from those of equivalent bulk thin films or individual noninteracting nanoparticles, reveals the essential role played by the interparticle collective effects. This work shows the reliability of a noninvasive optical approach to characterize the dynamical torque in high density magnetic recording media made of organized and interacting nanoparticles.

13.
J Clin Apher ; 31(1): 63-5, 2016 Feb.
Article in English | MEDLINE | ID: mdl-25851808

ABSTRACT

Autoantibodies to the voltage-gated potassium channel (VGKC) complex cause a spectrum of non-paraneoplastic neurologic syndromes including limbic encephalitis (LE). We report a case of a man with LE who underwent a course of therapeutic plasma exchange (TPE) in addition to other immunomodulatory therapies and experienced sustained clinical resolution of his symptoms. This report adds to the existing literature supporting TPE in cases of LE due to VGKC complex autoantibodies.


Subject(s)
Autoantibodies/blood , Limbic Encephalitis/immunology , Limbic Encephalitis/therapy , Plasma Exchange , Potassium Channels, Voltage-Gated/immunology , Aged , Autoantibodies/isolation & purification , Humans , Limbic Encephalitis/etiology , Male , Steroids/adverse effects
14.
PLoS One ; 7(9): e43945, 2012.
Article in English | MEDLINE | ID: mdl-22984455

ABSTRACT

To elucidate the cortical control of handwriting, we examined time-dependent statistical and correlational properties of simultaneously recorded 64-channel electroencephalograms (EEGs) and electromyograms (EMGs) of intrinsic hand muscles. We introduced a statistical method, which offered advantages compared to conventional coherence methods. In contrast to coherence methods, which operate in the frequency domain, our method enabled us to study the functional association between different neural regions in the time domain. In our experiments, subjects performed about 400 stereotypical trials during which they wrote a single character. These trials provided time-dependent EMG and EEG data capturing different handwriting epochs. The set of trials was treated as a statistical ensemble, and time-dependent correlation functions between neural signals were computed by averaging over that ensemble. We found that trial-to-trial variability of both the EMGs and EEGs was well described by a log-normal distribution with time-dependent parameters, which was clearly distinguished from the normal (Gaussian) distribution. We found strong and long-lasting EMG/EMG correlations, whereas EEG/EEG correlations, which were also quite strong, were short-lived with a characteristic correlation durations on the order of 100 ms or less. Our computations of correlation functions were restricted to the [Formula: see text] spectral range (13-30 Hz) of EEG signals where we found the strongest effects related to handwriting. Although, all subjects involved in our experiments were right-hand writers, we observed a clear symmetry between left and right motor areas: inter-channel correlations were strong if both channels were located over the left or right hemispheres, and 2-3 times weaker if the EEG channels were located over different hemispheres. Although we observed synchronized changes in the mean energies of EEG and EMG signals, we found that EEG/EMG correlations were much weaker than EEG/EEG and EMG/EMG correlations. The absence of strong correlations between EMG and EEG signals indicates that (i) a large fraction of the EEG signal includes electrical activity unrelated to low-level motor variability; (ii) neural processing of cortically-derived signals by spinal circuitry may reduce the correlation between EEG and EMG signals.


Subject(s)
Cerebral Cortex/physiology , Handwriting , Neurons/physiology , Statistics as Topic , Color , Electrodes , Electroencephalography , Electromyography , Humans , Probability , Signal Processing, Computer-Assisted , Surface Properties , Time Factors
15.
Ann Hum Genet ; 75(3): 351-8, 2011 May.
Article in English | MEDLINE | ID: mdl-21488853

ABSTRACT

Parkinson disease (PD) is a common complex neurodegenerative disorder with an underlying genetic etiology that has been difficult to dissect. Although some PD risk genes have been discovered, most of the underlying genetic etiology remains unknown. To further elucidate the genetic component, we have undertaken a genome-wide linkage screen in an isolated founder population of Amish living in the Midwestern United States. We performed tests for linkage and for association using a marker set of nearly 6000 single-nucleotide polymorphisms. Parametric multipoint linkage analysis generated a logarithm of the odds of linkage (LOD) score of 2.44 on chromosome 6 in the SYNE1 gene, approximately 8 Mbp from the PARK2 gene. In a different region on chromosome 6 (∼67 Mbp from PARK2) an association was found for rs4302647 (p < 4.0 × 10(-6) ), which is not within 300 kb of any gene. While the association exceeds Bonferroni correction, it may yet represent a false positive due to the small sample size and the low minor allele frequency. The minor allele frequency in affecteds is 0.07 compared to 0.01 in unaffecteds. Taken together, these results support involvement of loci on chromosome 6 in the genetic etiology of PD.


Subject(s)
Chromosomes, Human, Pair 6 , Genetic Predisposition to Disease , Genome-Wide Association Study , Parkinson Disease/genetics , Aged , Female , Humans , Indiana , Male , Ohio , Polymorphism, Single Nucleotide
16.
Am J Med Genet B Neuropsychiatr Genet ; 153B(5): 1060-9, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20468060

ABSTRACT

Hierarchical clustering is frequently used for grouping results in expression or haplotype analyses. These methods can elucidate patterns between measures that can then be applied to discerning their validity in discriminating between experimental conditions. Here a hierarchical clustering method is used to analyze the results of an imaging genetics study using multiple brain morphology and cognitive testing endpoints for older adults with amnestic mild cognitive impairment (MCI) or cognitive complaints (CC) compared to healthy controls (HC). The single nucleotide polymorphisms (SNPs) are a subset of those included on a larger array that are found in a reported Alzheimer's disease (AD) and neurodegeneration pathway. The results indicate that genetic models within the endpoints cluster together, while there are 4 distinct sets of SNPs that differentiate between the endpoints, with most significant results associated with morphology endpoints rather than cognitive testing of patients' reported symptoms. The genes found in at least one cluster are ABCB1, APBA1, BACE1, BACE2, BCL2, BCL2L1, CASP7, CHAT, CST3, DRD3, DRD5, IL6, LRP1, NAT1, and PSEN2. The greater associations with morphology endpoints suggests that changes in brain structure can be influenced by an individual's genetic background in the absence of dementia and in some cases (Cognitive Complaints group) even without those effects necessarily being detectable on commonly used clinical tests of cognition. The results are consistent with polygenic influences on early neurodegenerative changes and demonstrate the effectiveness of hierarchical clustering in identifying genetic associations among multiple related phenotypic endpoints.


Subject(s)
Amnesia/complications , Amnesia/genetics , Cognition Disorders/complications , Cognition Disorders/genetics , Magnetic Resonance Imaging , Neuropsychological Tests , Adult , Aged , Alzheimer Disease/diagnosis , Alzheimer Disease/genetics , Cluster Analysis , Cognition Disorders/diagnosis , Female , Humans , Male , Phenotype , Polymorphism, Single Nucleotide/genetics
17.
Lab Chip ; 7(8): 1057-61, 2007 Aug.
Article in English | MEDLINE | ID: mdl-17653349

ABSTRACT

We demonstrate that the thermal response of uncalibrated atomic force microscope cantilevers can be used to extract the density and the viscosity of viscous liquids with good accuracy. Temperature dependent thermal noise spectra were measured in water/poly(ethylene glycol) mixtures. Empirical parameters characteristic of the resonance behavior of the system were extracted from data recorded for one of the solutions at room temperature. These parameters were then employed to determine both viscosity and density values of the solutions simultaneously at different temperatures. In addition, activation energies for viscous flow were determined from the viscosity values obtained. The method presented is both fast and reliable and has the potential to be applied in connection with microfluidic systems, making macroscopic amounts of liquid and separate measurements with a viscometer and a densimeter redundant.


Subject(s)
Microscopy, Atomic Force , Models, Theoretical , Polyethylene Glycols/chemistry , Water/chemistry , Calibration , Microfluidic Analytical Techniques , Microscopy, Atomic Force/instrumentation , Microscopy, Atomic Force/methods , Solutions , Spectrum Analysis , Temperature , Viscosity
18.
BMC Bioinformatics ; 7: 39, 2006 Jan 25.
Article in English | MEDLINE | ID: mdl-16436204

ABSTRACT

BACKGROUND: The identification and characterization of genes that influence the risk of common, complex multifactorial disease primarily through interactions with other genes and environmental factors remains a statistical and computational challenge in genetic epidemiology. We have previously introduced a genetic programming optimized neural network (GPNN) as a method for optimizing the architecture of a neural network to improve the identification of gene combinations associated with disease risk. The goal of this study was to evaluate the power of GPNN for identifying high-order gene-gene interactions. We were also interested in applying GPNN to a real data analysis in Parkinson's disease. RESULTS: We show that GPNN has high power to detect even relatively small genetic effects (2-3% heritability) in simulated data models involving two and three locus interactions. The limits of detection were reached under conditions with very small heritability (<1%) or when interactions involved more than three loci. We tested GPNN on a real dataset comprised of Parkinson's disease cases and controls and found a two locus interaction between the DLST gene and sex. CONCLUSION: These results indicate that GPNN may be a useful pattern recognition approach for detecting gene-gene and gene-environment interactions.


Subject(s)
Algorithms , Chromosome Mapping/methods , Gene Expression Profiling/methods , Genetic Predisposition to Disease/genetics , Neural Networks, Computer , Parkinson Disease/genetics , Protein Interaction Mapping/methods , Diagnosis, Computer-Assisted/methods , Genetic Testing/methods , Humans , Multigene Family/genetics , Parkinson Disease/diagnosis , Pattern Recognition, Automated/methods , Polymorphism, Single Nucleotide/genetics
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