Leaf Morphological and Epidermal Traits Variability along an Environmental Gradients in Ten Natural Populations of Pistacia lentiscus.

The species belonging to the genus Pistacia possess ecological, economic, and medicinal value. They show a very high ecological plasticity. This research is a contribution to the study of the intraspecific diversity and variability of 10 populations of Pistacia lentiscus in different bioclimates. Nine locations in Algeria and one site in France have been selected in order to understand the strategies developed by this species under extreme conditions, including altitude and aridity, and to identify the adaptive processes that can be observed based on the morphological and ultrastructural features of the leaf. As a result of this research, we have collected a large quantity of important information on morphological and microphytodermal leaf variability for the ten studied populations. The statistical analyses showed a very important difference in the studied characteristics between these populations. It has been demonstrated that environmental factors also have a significant impact on the heterogeneity of most measured leaf features. Moreover, the observations with the scanning electron microscope (SEM) enabled us to highlight new characteristics of the studied species, such as the glandular trichomes on the leaflets and embedded stomata in the epidermis. These criteria could supplement the existing morphological characteristics used in the systematic classification of the Pistacia genus. Overall, the studied species have shown xeromorphy features, which give them the opportunity to be used in desertification mitigation programs, due to their ability to withstand conditions of extreme aridity.

The Role of Gorse (Ulex parviflorus Pourr. Scrubs) in a Mediterranean Shrubland Undergoing Climate Change: Approach by Hyperspectral Measurements.

The goal of this study was to observe the neighbor effect of Gorse, a plant of the Fabaceae family, on three typical species of Mediterranean shrubland: kermes oak, white Cistus and rosemary. For this purpose, a hyperspectral analysis and the application of vegetation indices (VIs) were carried out. We provide the spectral signature of Gorse, which differs mainly from that of its companion species in the band between 700 and 1350 nm. This supposed Gorse effect was tested in natural conditions and in conditions of forced drought to simulate the effects of the climate change predicted for the Mediterranean Basin. Field spectrometry demonstrated the existence of such interactions between the four species. In control stands, the presence of Gorse significantly modifies the spectral responses of kermes, white Cistus and rosemary, mainly in the near-infrared region (700-1350 nm). Both tri- and tetra-specific plant assemblages also exhibited spectral changes, suggesting an indirect effect of Gorse. Under drought conditions, one-way ANOVA followed by Fisher's LSD test led us to identify the features involved in plants' coexistence with Gorse. The Cistus albidus reflectance spectrum was clearly increased in the presence of Gorse in rain-exclusion conditions. The application of several VIs allowed us to extract new information on the variation of spectral signatures. Unexpectedly, nitrogen supply by Gorse was not shown, except for Cistus, as shown by the VI NDVI (N) analysis. However, this study proved that Gorse can modify the behavior of its companion species in controls, but also in drought conditions, by increasing their photosynthesis activity (NIRvP) and water content (ratio R975/R900). Gorse therefore appears as a key species in the ecosystem of the Mediterranean shrubland, but its high vulnerability to drought leaves a vacant ecological niche in plant communities. While the spectral reflectance increases linearly with the specific richness in the lack of any disturbance, by contrast, climate aridification imposes a double reciprocal profile. This clearly means that multispecific plant communities cope better with climate change. Nevertheless, knowledge of the underlying mechanisms requires further structural, chemical, and biochemical investigation.

The Optical Response of a Mediterranean Shrubland to Climate Change: Hyperspectral Reflectance Measurements during Spring.

Remote sensing techniques in terms of monitoring plants' responses to environmental constraints have gained much attention during recent decades. Among these constraints, climate change appears to be one of the major challenges in the Mediterranean region. In this study, the main goal was to determine how field spectrometry could improve remote sensing study of a Mediterranean shrubland submitted to climate aridification. We provided the spectral signature of three common plants of the Mediterranean garrigue: Cistus albidus, Quercus coccifera, and Rosmarinus officinalis. The pattern of these spectra changed depending on the presence of a neighboring plant species and water availability. Indeed, the normalized water absorption reflectance (R975/R900) tended to decrease for each species in trispecific associations (11-26%). This clearly indicates that multispecific plant communities will better resist climate aridification compared to monospecific stands. While Q. coccifera seemed to be more sensible to competition for water resources, C. albidus exhibited a facilitation effect on R. officinalis in trispecific assemblage. Among the 17 vegetation indices tested, we found that the pigment pheophytinization index (NPQI) was a relevant parameter to characterize plant-plant coexistence. This work also showed that some vegetation indices known as indicators of water and pigment contents could also discriminate plant associations, namely RGR (Red Green Ratio), WI (Water Index), Red Edge Model, NDWI1240 (Normalized Difference Water Index), and PRI (Photochemical Reflectance Index). The latter was shown to be linearly and negatively correlated to the ratio of R975/R900, an indicator of water status.

Response of Downy Oak (Quercus pubescens Willd.) to Climate Change: Transcriptome Assembly, Differential Gene Analysis and Targeted Metabolomics.

Global change scenarios in the Mediterranean basin predict a precipitation reduction within the coming hundred years. Therefore, increased drought will affect forests both in terms of adaptive ecology and ecosystemic services. However, how vegetation might adapt to drought is poorly understood. In this report, four years of climate change was simulated by excluding 35% of precipitation above a downy oak forest. RNASeq data allowed us to assemble a genome-guided transcriptome. This led to the identification of differentially expressed features, which was supported by the characterization of target metabolites using a metabolomics approach. We provided 2.5 Tb of RNASeq data and the assembly of the first genome guided transcriptome of Quercus pubescens. Up to 5724 differentially expressed transcripts were obtained; 42 involved in plant response to drought. Transcript set enrichment analysis showed that drought induces an increase in oxidative pressure that is mitigated by the upregulation of ubiquitin-like protein protease, ferrochelatase, oxaloacetate decarboxylase and oxo-acid-lyase activities. Furthermore, the downregulation of auxin biosynthesis and transport, carbohydrate storage metabolism were observed as well as the concomitant accumulation of metabolites, such as oxalic acid, malate and isocitrate. Our data suggest that early metabolic changes in the resistance of Q. pubescens to drought involve a tricarboxylic acid (TCA) cycle shunt through the glyoxylate pathway, galactose metabolism by reducing carbohydrate storage and increased proteolytic activity.

Exogenous Isoprene Confers Physiological Benefits in a Negligible Isoprene Emitter (Acer monspessulanum L.) Under Water Deficit.

Isoprene, the main volatile released by plants, is known to protect the photosynthetic apparatus in isoprene emitters submitted to oxidative pressures caused by environmental constraints. Whether ambient isoprene contributes to protect negligible plant emitters under abiotic stress conditions is less clear, and no study has tested if ambient isoprene is beneficial during drought periods in plant species that naturally release negligible isoprene emissions. This study examines the effect of exogenous isoprene (20 ppbv) on net photosynthesis, stomatal conductance and production of H2O2 (a reactive oxygen species: ROS) in leaves of Acer monspessulanum (a negligible isoprene emitter) submitted to three watering treatments (optimal, moderate water stress and severe water stress). Results showed that A. monspessulanum exhibited a net photosynthesis increase (+30%) and a relative leaf H2O2 decrease when saplings were exposed to an enriched isoprene atmosphere compared to isoprene-free conditions under moderate water deficit. Such physiological improvement under isoprene exposure was not observed under optimal watering or severe water stress. These findings suggest that when negligible isoprene emitters are surrounded by a very high concentration of isoprene in the ambient air, some plant protection mechanism occurs under moderate water deficit probably related to protection against ROS damage eventually impeding photosynthesis drop.

Resistance of native oak to recurrent drought conditions simulating predicted climatic changes in the Mediterranean region.

The capacity of a Quercus pubescens forest to resist recurrent drought was assessed on an in situ experimental platform through the measurement of a large set of traits (ecophysiological and metabolic) studied under natural drought (ND) and amplified drought (AD) induced by partial rain exclusion. This study was performed during the third and fourth years of AD, which correspond to conditions of moderate AD in 2014 and harsher AD in 2015, respectively. Although water potential (Ψ) and net photosynthesis (Pn) were noticeably reduced under AD in 2015 compared to ND, trees showed similar growth and no oxidative stress. The absence of oxidative damage could be due to a strong accumulation of α-tocopherol, suggesting that this compound is a major component of the Q. pubescens antioxidant system. Other antioxidants were rather stable under AD in 2014, but slight changes started to be observed in 2015 (carotenoids and isoprene) due to harsher conditions. Our results indicate that Q. pubescens could be able to cope with AD, for at least 4 years, likely due to its antioxidant system. However, growth decrease was observed during the fifth year (2016) of AD, suggesting that this resistance could be threatened over longer periods of recurrent drought.

Leaf and canopy photosynthesis of a chlorophyll deficient soybean mutant.

The photosynthetic, optical, and morphological characteristics of a chlorophyll-deficient (Chl-deficient) "yellow" soybean mutant (MinnGold) were examined in comparison with 2 green varieties (MN0095 and Eiko). Despite the large difference in Chl content, similar leaf photosynthesis rates were maintained in the Chl-deficient mutant by offsetting the reduced absorption of red photons by a small increase in photochemical efficiency and lower non-photochemical quenching. When grown in the field, at full canopy cover, the mutants reflected a significantly larger proportion of incoming shortwave radiation, but the total canopy light absorption was only slightly reduced, most likely due to a deeper penetration of light into the canopy space. As a consequence, canopy-scale gross primary production and ecosystem respiration were comparable between the Chl-deficient mutant and the green variety. However, total biomass production was lower in the mutant, which indicates that processes other than steady state photosynthesis caused a reduction in biomass accumulation over time. Analysis of non-photochemical quenching relaxation and gas exchange in Chl-deficient and green leaves after transitions from high to low light conditions suggested that dynamic photosynthesis might be responsible for the reduced biomass production in the Chl-deficient mutant under field conditions.

Challenges and advances for transcriptome assembly in non-model species.

Analyses of high-throughput transcriptome sequences of non-model organisms are based on two main approaches: de novo assembly and genome-guided assembly using mapping to assign reads prior to assembly. Given the limits of mapping reads to a reference when it is highly divergent, as is frequently the case for non-model species, we evaluate whether using blastn would outperform mapping methods for read assignment in such situations (>15% divergence). We demonstrate its high performance by using simulated reads of lengths corresponding to those generated by the most common sequencing platforms, and over a realistic range of genetic divergence (0% to 30% divergence). Here we focus on gene identification and not on resolving the whole set of transcripts (i.e. the complete transcriptome). For simulated datasets, the transcriptome-guided assembly based on blastn recovers 94.8% of genes irrespective of read length at 0% divergence; however, assignment rate of reads is negatively correlated with both increasing divergence level and reducing read lengths. Nevertheless, we still observe 92.6% of recovered genes at 30% divergence irrespective of read length. This analysis also produces a categorization of genes relative to their assignment, and suggests guidelines for data processing prior to analyses of comparative transcriptomics and gene expression to minimize potential inferential bias associated with incorrect transcript assignment. We also compare the performances of de novo assembly alone vs in combination with a transcriptome-guided assembly based on blastn both via simulation and empirically, using data from a cyprinid fish species and from an oak species. For any simulated scenario, the transcriptome-guided assembly using blastn outperforms the de novo approach alone, including when the divergence level is beyond the reach of traditional mapping methods. Combining de novo assembly and a related reference transcriptome for read assignment also addresses the bias/error in contigs caused by the dependence on a related reference alone. Empirical data corroborate these findings when assembling transcriptomes from the two non-model organisms: Parachondrostoma toxostoma (fish) and Quercus pubescens (plant). For the fish species, out of the 31,944 genes known from D. rerio, the guided and de novo assemblies recover respectively 20,605 and 20,032 genes but the performance of the guided assembly approach is much higher for both the contiguity and completeness metrics. For the oak, out of the 29,971 genes known from Vitis vinifera, the transcriptome-guided and de novo assemblies display similar performance, but the new guided approach detects 16,326 genes where the de novo assembly only detects 9,385 genes.

Inter-population variability of terpenoid composition in leaves of Pistacia lentiscus L. from Algeria: a chemoecological approach.

Three different altitudes were selected to study the variability of terpenoid composition from leaves of female plants of Pistacia lentiscus L. throughout the elevation gradient. GC-MS analyses showed that terpenoid contents change with altitude. Forty nine compounds were identified with a high interpopulation variability for low- and midaltitude sites that also exhibited the same major components when data were expressed on dry weight basis. However, Two-Way-ANOVA followed by Tukey's post hoc test showed that monoterpene hydrocarbons increased with elevation, giving values of 21.7, 37.5 and 221.5 µg g⁻¹ dw for low- mid- and highlands, respectively. On the other hand, applying P.C.A. with data expressed in percentage of the chromatogram of the volatile extract led to the identification of three chemotypes associated with altitudinal levels. In highlands (Group I), the major compounds were ß-caryophyllene (12%), δ-cadinene (9.3%) and a-pinene (6.3%) while in midlands (Group II), ß-caryophyllene (11.5%), δ-cadinene (8.6%) and caryophyllene oxide (6.8%) were the main components. In lowlands (Group III) δ-cadinene (10.9%), cubebol (10.5%) and ß-bisabolene (7.7%) were chiefly present. Hence, the involvement of genetic factors, temperature and drought in the chemical polymorphism of P. lentiscus associated with elevation is discussed in this report.

Depollution potential of three macrophytes: exudated, wall-bound and intracellular peroxidase activities plus intracellular phenol concentrations.

The aim of this study was to investigate the potential role of three macrophyte species (Iris pseudacorus, Typha latifolia and Phragmites australis) for detoxication of xenobiotics, and to study their variations with seasons or concentrations of sewage sludge from the food industry. For this purpose, some aspects of the green liver concept were explored through peroxidase measurements in three compartments in roots: intracellular, cell wall and extracellular. In addition, phenol concentrations were also measured in order to assess heavy metal detoxication potential. Enzyme activities and phenol concentrations were overall lower in winter according to the phenological stages and some sludge effects occurred. Results show that P. australis roots exuded and contained more peroxidase in all seasons: 17 U/g (1373 U/g protein), 0.8 U/g (613 U/g protein) and 4.8 U/g (1329 U/g protein) in intracellular compartments, cell wall and exudates, respectively. In contrast, the highest phenol concentration was found in I. pseudacorus roots: 3.58 mg eq. [corrected] gallic acid/g. Hence, in constructed wetlands, P. australis is suitable for organic waste water treatment, while I. pseudacorus should be used in the case of waters highly charged with heavy metals.

Variations in allelochemical composition of leachates of different organs and maturity stages of Pinus halepensis.

We investigated changes in the occurrence of allelochemicals from leachates of different Pinus halepensis organs taking into account the stages of pine stand age (i.e., young < 15-years-old, middle age +/- 30-years, and old > 60-years-old). GC-MS analysis of aqueous extracts revealed approx. 59 components from needles and roots. The major constituents were divided into different phytochemical groups-phenolics (50%), fatty acids (44%), and terpenoids. Further analyses were carried out to characterize the distribution of allelochemicals in different organs and P. halepensis successional stages. Roots and needles had two distinct chemical profiles, while needle leachates were composed mainly of oxygenated terpenoids (e.g., alpha-eudesmol, alpha-cadinol, and alpha-terpineol). Roots mainly contained fatty acids. Needles from young pine stands had the highest content of monoterpenes, suggesting their role as potential allelochemicals that could help young pine stands to establish. Pooling the different functional chemical groups showed that needles and, to a lesser extent, old roots, had higher chemical diversity than the roots of young and medium-aged pines. The highest diversity in phenolic constituents and fatty acids was in young needles (D(chem) = 2.38). Finally, caffeic acid, a compound that has allelopathic properties was found in aqueous extracts at high concentrations in both young needles and old roots. The role of this compound in mediation of biological interactions in P. halepensis ecosystem functioning is discussed.

Compost may affect volatile and semi-volatile plant emissions through nitrogen supply and chlorophyll fluorescence.

The use of composted biosolids as an amendment for forest regeneration in degraded ecosystems is growing since sewage-sludge dumping has been banned in the European Community. Its consequences on plant terpenes are however unknown. Terpene emissions of both Rosmarinus officinalis (a terpene-storing species) and Quercus coccifera (a non-storing species) and terpene content of the former, were studied after a middle-term exposure to compost at intermediate (50tha(-1): D50) and high (100tha(-1): D100) compost rates, in a seven-year-old post-fire shrubland ecosystem. Some chlorophyll fluorescence parameters (Fv/Fm, ETR, Phi(PSII)), soil and plant enrichment in phosphorus (P) and nitrogen (N) were monitored simultaneously in amended and non-amended plots in order to establish what factors were responsible for possible compost effect on terpenes. Compost affected all studied parameters with the exception of Fv/Fm and terpene content. For both species, mono- and sesquiterpene basal emissions were intensified solely under D50 plots. On the contrary leaf P, leaf N levels reached in D50 were partly responsible of terpene changes, suggesting that optimal N conditions occurred therein. N also affected ETR and Phi(PSII) which were, in turn, robustly correlated to terpene emissions. These results imply that emissions of terpene-storing and non-storing species were under nitrogen and chlorophyll fluorescence control, and that a correct management of compost rates applied on soil may modify terpene emission rate of plants, which in turn has consequences in air quality and plant defense mechanisms.

Comparative morphology of leaf epidermis in eight populations of Atlas Pistachio (Pistacia atlantica Desf., Anacardiaceae).

A comparative analysis was undertaken to conduct a micromorphological study of Pistacia atlantica leaves by comparing different populations grown under different climatic conditions. Leaf epidermis of eight wild populations was investigated under scanning electron microscope. Micromorphological characteristics (epidermis ornament, stomata type, waxes as well as trichomes) of the adaxial and abaxial leaf surfaces were examined. The epidermis ornament varied among populations and leaf surface, the abaxial leaf surface is reticulate with a striate surface. Messaad site shows a smooth uneven surface. The adaxial leaf surface is smooth but several ornamentations can be seen. The leaflet is amphistomatic; the stomata appeared to be slightly sunken. A variety of stomatal types were recorded; actinocytic and anomocytic types are the most frequent. The indumentum consisted of glandular and nonglandular trichomes. Unicellular glandular trichomes are recorded for P. atlantica leaves in this study. Their density is higher in Oued safene site, located at the highest altitude in comparison with the other populations. The wax occurred in all the sites and its pattern varied according to the populations studied, particularly between Berriane and Messaad. The morphological variability exhibited by the eight populations of P. atlantica may be interpreted as relevant to the ecological plasticity and the physiological mechanisms involved are discussed in this report.

Plant coexistence alters terpene emission and content of Mediterranean species.

There is evidence that secondary metabolism may modulate plant interactions and is modified by different biotic stress agents, such as herbivores or pathogens. However, it is poorly understood whether secondary metabolism is altered during competition among plants. The intraspecific and interspecific coexistence of some Mediterranean potted seedlings, namely Rosmarinus officinalis, Pinus halepensis, Cistus albidus and Quercus coccifera was investigated through their terpene accumulation within leaves (except for Q. coccifera, a non-storing species) and terpene emissions (for all species). Competition had both positive and negative effects for both terpene emissions and content, depending on the species a seedling coexisted with. For R. officinalis, terpene concentrations (1.8-cineole and camphor) and terpene emissions (camphene, camphor and overall monoterpenes) were lower when the neighbour species was P. halepensis. For C. albidus, no changes were observed in its content, while the overall sesquiterpene emissions (70% of total emissions) were reduced in all competition conditions, except in intraspecific competition. In the case of P. halepensis, the highest terpene content occurred when it grew with C. albidus, and in intraspecific competition, while its emissions were reduced under these conditions. Only emissions of Q. coccifera showed no significant changes in the different competition treatments.

Effect of intraspecific competition and substrate type on terpene emissions from some Mediterranean plant species.

Competition is an important factor that has been extensively reported in the Mediterranean area. There is evidence that leaf terpene accumulation may vary between plants growing on calcareous and siliceous soils. In the present study, leaf terpene emissions from potted seedlings of Pinus halepensis, Cistus albidus, and Quercus coccifera, growing under natural environmental conditions on calcareous and siliceous substrates, were studied by using a bag enclosure method. In both substrates, seedlings were potted alone and in intraspecific competition, to examine the effect of substrate type and that of intraspecific competition on terpene emissions. The results showed that competition favored: (i) overall monoterpene and sesquiterpene emissions from Q. coccifera; (ii) overall monoterpene emissions from P. halepensis; (iii) overall sesquiterpene emissions from C. albidus. Substrate type affected terpene emissions to a limited extent and in a species-specific way. Whereas for Q. coccifera, the overall monoterpene emissions and that of Allo-aromadendrene were favored on siliceous substrate, no significant changes were found in emissions from P. halepensis. Only the release of AR-curcumene from C. albidus was higher on siliceous substrate. We also found high variability in terpene emission composition from the study species, particularly for P. halepensis and Q. coccifera. These two species released both monoterpenes and sesquiterpenes, instead of monoterpenes only, as shown in previous studies.

Composition and some biological activities of the essential oils from an African pasture grass: Elionurus elegans Kunth.

The volatile oils of the aerial parts and roots from a pasture plant, Elionurus elegans, were studied by GC-MS analyses. Both organs studied contained only terpenic constituents. The main components found in the extract essential oils of the aerial parts were campherenone (43.0%), caryophyllene oxide (4.9%), and bisabolone (4.9%), whereas those found in the root essential oils were campherenone (39.0%), epi-beta-santalene (12.0%), and caryophyllene oxide (4.6%). Furthermore, the oils were tested for antibacterial and antifungal activities. The results obtained led to a nonsignificant inhibitory effect, although an increase of the lag stage was shown for the kinetics growth of Candida albicans, Saccharomyces cerevisiae, Enterococcus hirae, and Staphylococcus aureus. When alpha-tocopherol is used as a control, the antioxidant activities of the oils obtained from the aerial parts and roots were 30 and 46% IC(50), respectively.