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1.
Placenta ; 123: 12-23, 2022 06 01.
Article in English | MEDLINE | ID: mdl-35512490

ABSTRACT

INTRODUCTION: The effect of SARS-CoV-2 severity or the trimester of infection in pregnant mothers, placentas, and infants is not fully understood. METHODS: A retrospective, observational cohort study in Chapel Hill, NC of 115 mothers with SARS-CoV-2 and singleton pregnancies from December 1, 2019 to May 31, 2021 via chart review to document the infants' weight, length, head circumference, survival, congenital abnormalities, hearing loss, maternal complications, and placental pathology classified by the Amsterdam criteria. RESULTS: Of the 115 mothers, 85.2% were asymptomatic (n = 37) or had mild (n = 61) symptoms, 13.0% had moderate (n = 9) or severe (n = 6) COVID-19, and 1.74% (n = 2) did not have symptoms recorded. Moderate and severe maternal infections were associated with increased C-section, premature delivery, infant NICU admission, and were more likely to occur in Type 1 (p = 0.0055) and Type 2 (p = 0.0285) diabetic mothers. Only one infant (0.870%) became infected with SARS-CoV-2, which was not via the placenta. Most placentas (n = 63, 54.8%) did not show specific histologic findings; however, a subset showed mild maternal vascular malperfusion (n = 26, 22.6%) and/or mild microscopic ascending intrauterine infection (n = 28, 24.3%). The infants had no identifiable congenital abnormalities, and all infants and mothers survived. DISCUSSION: Most mothers and their infants had a routine clinical course; however, moderate and severe COVID-19 maternal infections were associated with pregnancy complications and premature delivery. Mothers with pre-existing, non-gestational diabetes were at greatest risk of developing moderate or severe COVID-19. The placental injury patterns of maternal vascular malperfusion and/or microscopic ascending intrauterine infection were not associated with maternal COVID-19 severity.


Subject(s)
COVID-19 , Pregnancy Complications, Infectious , Premature Birth , Female , Humans , Immunoglobulin G , Infant , Infectious Disease Transmission, Vertical , Mothers , Placenta/pathology , Pregnancy , Pregnancy Complications, Infectious/pathology , Premature Birth/epidemiology , Premature Birth/pathology , Retrospective Studies , SARS-CoV-2
2.
Int J Tuberc Lung Dis ; 21(5): 493-502, 2017 05 01.
Article in English | MEDLINE | ID: mdl-28399963

ABSTRACT

SETTING: Xpert® MTB/RIF is the most widely used molecular assay for rapid diagnosis of tuberculosis (TB). The number of polymerase chain reaction cycles after which detectable product is generated (cycle threshold value, CT) correlates with the bacillary burden.OBJECTIVE To investigate the association between Xpert CT values and smear status through a systematic review and individual-level data meta-analysis. DESIGN: Studies on the association between CT values and smear status were included in a descriptive systematic review. Authors of studies including smear, culture and Xpert results were asked for individual-level data, and receiver operating characteristic curves were calculated. RESULTS: Of 918 citations, 10 were included in the descriptive systematic review. Fifteen data sets from studies potentially relevant for individual-level data meta-analysis provided individual-level data (7511 samples from 4447 patients); 1212 patients had positive Xpert results for at least one respiratory sample (1859 samples overall). ROC analysis revealed an area under the curve (AUC) of 0.85 (95%CI 0.82-0.87). Cut-off CT values of 27.7 and 31.8 yielded sensitivities of 85% (95%CI 83-87) and 95% (95%CI 94-96) and specificities of 67% (95%CI 66-77) and 35% (95%CI 30-41) for smear-positive samples. CONCLUSION: Xpert CT values and smear status were strongly associated. However, diagnostic accuracy at set cut-off CT values of 27.7 or 31.8 would not replace smear microscopy. How CT values compare with smear microscopy in predicting infectiousness remains to be seen.


Subject(s)
Polymerase Chain Reaction/methods , Sputum/microbiology , Tuberculosis/diagnosis , Humans , Microscopy/methods , Sensitivity and Specificity
3.
Pharmacogenomics J ; 17(1): 61-68, 2017 01.
Article in English | MEDLINE | ID: mdl-26667830

ABSTRACT

Tacrolimus is dependent on CYP3A5 enzyme for metabolism. Expression of the CYP3A5 enzyme is controlled by several alleles including CYP3A5*1, CYP3A5*3, CYP3A5*6 and CYP3A5*7. African Americans (AAs) have on average higher tacrolimus dose requirements than Caucasians; however, some have requirements similar to Caucasians. Studies in AAs have primarily evaluated the CYP3A5*3 variant; however, there are other common nonfunctional variants in AAs (CYP3A5*6 and CYP3A5*7) that do not occur in Caucasians. These variants are associated with lower dose requirements and may explain why some AAs are metabolically similar to Caucasians. We created a tacrolimus clearance model in 354 AAs using a development and validation cohort. Time after transplant, steroid and antiviral use, age and CYP3A5*1, *3, *6 and *7 alleles were significant toward clearance. This study is the first to develop an AA-specific genotype-guided tacrolimus dosing model to personalize therapy.


Subject(s)
Black or African American/genetics , Calcineurin Inhibitors/administration & dosage , Cytochrome P-450 CYP3A/genetics , Drug Dosage Calculations , Immunosuppressive Agents/administration & dosage , Kidney Transplantation , Pharmacogenomic Variants , Tacrolimus/administration & dosage , Transplant Recipients , Adolescent , Adult , Aged , Calcineurin Inhibitors/adverse effects , Calcineurin Inhibitors/pharmacokinetics , Canada/epidemiology , Cytochrome P-450 CYP3A/metabolism , Female , Gene Frequency , Genotype , Graft Rejection/ethnology , Graft Rejection/immunology , Graft Rejection/prevention & control , Graft Survival/drug effects , Humans , Immunosuppressive Agents/adverse effects , Immunosuppressive Agents/pharmacokinetics , Kidney Transplantation/adverse effects , Male , Metabolic Clearance Rate/genetics , Middle Aged , Models, Genetic , Pharmacogenetics , Pharmacogenomic Testing , Phenotype , Tacrolimus/adverse effects , Tacrolimus/pharmacokinetics , Treatment Outcome , United States/epidemiology , Young Adult
4.
Sci Total Environ ; 565: 1028-1036, 2016 Sep 15.
Article in English | MEDLINE | ID: mdl-27261430

ABSTRACT

Industrial hog operations (IHOs) have been identified as a source of antibiotic-resistant Staphylococcus aureus, including methicillin-resistant S. aureus (MRSA). However, few studies have investigated the presence of antibiotic-resistant S. aureus in the environment near IHOs, specifically surface waters proximal to spray fields where IHO liquid lagoon waste is sprayed. Surface water samples (n=179) were collected over the course of approximately one year from nine locations in southeastern North Carolina and analyzed for the presence of presumptive MRSA using CHROMagar MRSA media. Culture-based, biochemical, and molecular tests, as well as matrix-assisted laser desorption/ionization-time of flight mass spectrometry were used to confirm that isolates that grew on CHROMagar MRSA media were S. aureus. Confirmed S. aureus isolates were then tested for susceptibility to 16 antibiotics and screened for molecular markers of MRSA (mecA, mecC) and livestock adaptation (absence of scn). A total of 12 confirmed MRSA were detected in 9 distinct water samples. Nine of 12 MRSA isolates were also multidrug-resistant (MDRSA [i.e., resistant to ≥3 antibiotic classes]). All MRSA were scn-positive and most (11/12) belonged to a staphylococcal protein A (spa) type t008, which is commonly associated with humans. Additionally, 12 confirmed S. aureus that were methicillin-susceptible (MSSA) were recovered, 7 of which belonged to spa type t021 and were scn-negative (a marker of livestock-adaptation). This study demonstrated the presence of MSSA, MRSA, and MDRSA in surface waters adjacent to IHO lagoon waste spray fields in southeastern North Carolina. To our knowledge, this is the first report of waterborne S. aureus from surface waters proximal to IHOs.


Subject(s)
Anti-Bacterial Agents/pharmacology , Methicillin Resistance , Methicillin-Resistant Staphylococcus aureus/isolation & purification , Methicillin/pharmacology , Rivers/microbiology , Animal Husbandry/methods , Animals , Methicillin-Resistant Staphylococcus aureus/genetics , Microbial Sensitivity Tests , North Carolina , Phenotype , Sus scrofa
5.
Transl Psychiatry ; 6: e769, 2016 Mar 29.
Article in English | MEDLINE | ID: mdl-27023175

ABSTRACT

Cannabis is the most widely produced and consumed illicit psychoactive substance worldwide. Occasional cannabis use can progress to frequent use, abuse and dependence with all known adverse physical, psychological and social consequences. Individual differences in cannabis initiation are heritable (40-48%). The International Cannabis Consortium was established with the aim to identify genetic risk variants of cannabis use. We conducted a meta-analysis of genome-wide association data of 13 cohorts (N=32 330) and four replication samples (N=5627). In addition, we performed a gene-based test of association, estimated single-nucleotide polymorphism (SNP)-based heritability and explored the genetic correlation between lifetime cannabis use and cigarette use using LD score regression. No individual SNPs reached genome-wide significance. Nonetheless, gene-based tests identified four genes significantly associated with lifetime cannabis use: NCAM1, CADM2, SCOC and KCNT2. Previous studies reported associations of NCAM1 with cigarette smoking and other substance use, and those of CADM2 with body mass index, processing speed and autism disorders, which are phenotypes previously reported to be associated with cannabis use. Furthermore, we showed that, combined across the genome, all common SNPs explained 13-20% (P<0.001) of the liability of lifetime cannabis use. Finally, there was a strong genetic correlation (rg=0.83; P=1.85 × 10(-8)) between lifetime cannabis use and lifetime cigarette smoking implying that the SNP effect sizes of the two traits are highly correlated. This is the largest meta-analysis of cannabis GWA studies to date, revealing important new insights into the genetic pathways of lifetime cannabis use. Future functional studies should explore the impact of the identified genes on the biological mechanisms of cannabis use.


Subject(s)
Marijuana Abuse/genetics , Marijuana Smoking/genetics , Adolescent , Adult , Aged , Aged, 80 and over , CD56 Antigen/genetics , Carrier Proteins/genetics , Cell Adhesion Molecules/genetics , Female , Genome-Wide Association Study , Humans , Male , Membrane Proteins/genetics , Middle Aged , Potassium Channels/genetics , Potassium Channels, Sodium-Activated , Young Adult
6.
Am J Transplant ; 16(2): 574-82, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26485092

ABSTRACT

We previously reported that tacrolimus (TAC) trough blood concentrations for African American (AA) kidney allograft recipients were lower than those observed in white patients. Subtherapeutic TAC troughs may be associated with acute rejection (AR) and AR-associated allograft failure. This variation in TAC troughs is due, in part, to differences in the frequency of the cytochrome P450 CYP3A5*3 allele (rs776746, expresses nonfunctional enzyme) between white and AA recipients; however, even after accounting for this variant, variability in AA-associated troughs is significant. We conducted a genomewide association study of TAC troughs in AA kidney allograft recipients to search for additional genetic variation. We identified two additional CYP3A5 variants in AA recipients independently associated with TAC troughs: CYP3A5*6 (rs10264272) and CYP3A5*7 (rs41303343). All three variants and clinical factors account for 53.9% of the observed variance in troughs, with 19.8% of the variance coming from demographic and clinical factors including recipient age, glomerular filtration rate, anticytomegalovirus drug use, simultaneous pancreas-kidney transplant and antibody induction. There was no evidence of common genetic variants in AA recipients significantly influencing TAC troughs aside from the CYP3A gene. These results reveal that additional and possibly rare functional variants exist that account for the additional variation.


Subject(s)
Black or African American/genetics , Cytochrome P-450 CYP3A/genetics , Genome-Wide Association Study , Graft Rejection/genetics , Polymorphism, Single Nucleotide/genetics , Postoperative Complications/genetics , Tacrolimus/therapeutic use , Adolescent , Adult , Aged , Aged, 80 and over , Alleles , Child , Child, Preschool , Female , Follow-Up Studies , Genotype , Glomerular Filtration Rate , Graft Rejection/drug therapy , Graft Rejection/ethnology , Graft Survival , Humans , Immunosuppressive Agents/therapeutic use , Infant , Infant, Newborn , Kidney Failure, Chronic/genetics , Kidney Failure, Chronic/surgery , Kidney Function Tests , Kidney Transplantation/adverse effects , Male , Middle Aged , Prognosis , Risk Factors , Tissue Donors , Transplant Recipients , White People/genetics , Young Adult
8.
Mol Psychiatry ; 21(8): 1145-51, 2016 08.
Article in English | MEDLINE | ID: mdl-26239293

ABSTRACT

Although individual differences in intelligence (general cognitive ability) are highly heritable, molecular genetic analyses to date have had limited success in identifying specific loci responsible for its heritability. This study is the first to investigate exome variation in individuals of extremely high intelligence. Under the quantitative genetic model, sampling from the high extreme of the distribution should provide increased power to detect associations. We therefore performed a case-control association analysis with 1409 individuals drawn from the top 0.0003 (IQ >170) of the population distribution of intelligence and 3253 unselected population-based controls. Our analysis focused on putative functional exonic variants assayed on the Illumina HumanExome BeadChip. We did not observe any individual protein-altering variants that are reproducibly associated with extremely high intelligence and within the entire distribution of intelligence. Moreover, no significant associations were found for multiple rare alleles within individual genes. However, analyses using genome-wide similarity between unrelated individuals (genome-wide complex trait analysis) indicate that the genotyped functional protein-altering variation yields a heritability estimate of 17.4% (s.e. 1.7%) based on a liability model. In addition, investigation of nominally significant associations revealed fewer rare alleles associated with extremely high intelligence than would be expected under the null hypothesis. This observation is consistent with the hypothesis that rare functional alleles are more frequently detrimental than beneficial to intelligence.


Subject(s)
Intelligence/genetics , Adult , Alleles , Cognition , Exome/genetics , Exons/genetics , Female , Gene Frequency/genetics , Genetic Variation/genetics , Genome-Wide Association Study/methods , Genotype , Humans , Male , Multifactorial Inheritance/genetics , Polymorphism, Single Nucleotide/genetics , Quantitative Trait, Heritable
9.
Int J Tuberc Lung Dis ; 19(3): 273-5, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25686132

ABSTRACT

The Xpert(®) MTB/RIF assay has demonstrated robust capability for diagnosing tuberculosis (TB) and rifampin (RMP) resistance. Optimal use of Xpert in diverse settings will require knowledge of challenges when interpreting the results. We present three selected cases from the United States, a low-burden TB setting, to highlight important clinical scenarios encountered with Xpert testing: rapid RMP resistance detection in a patient with pre-extensively drug-resistant TB who immigrated from the Philippines, false-positive RMP resistance detection, and Mycobacterium tuberculosis detection in a culture-negative patient. These cases demonstrate that a low pre-test probability of TB or drug-resistant TB can complicate the interpretation of the Xpert assay.


Subject(s)
Molecular Diagnostic Techniques/methods , Nucleic Acid Amplification Techniques/methods , Tuberculosis, Pulmonary/diagnosis , Tuberculosis, Pulmonary/drug therapy , Adult , Aged , Antibiotics, Antitubercular/therapeutic use , Drug Resistance, Multiple, Bacterial , Female , HIV Seronegativity , Humans , Male , Middle Aged , Molecular Diagnostic Techniques/standards , Mycobacterium tuberculosis/drug effects , Mycobacterium tuberculosis/isolation & purification , Nucleic Acid Amplification Techniques/standards , Rifampin/therapeutic use , Specimen Handling , Sputum/microbiology , Treatment Outcome , Tuberculin Test , Tuberculosis, Multidrug-Resistant/drug therapy , United States
10.
Neuropsychologia ; 67: 132-47, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25499146

ABSTRACT

Decision criterion is an important factor in recognition memory, determining the amount of evidence required to judge an item as previously encountered. For a typical recognition memory test involving the prior study of a set of items, a conservative criterion establishes a higher standard of evidence for recognition and designates fewer items as previously studied. In contrast, a liberal criterion establishes a lower standard of evidence and designates more items as previously studied. Therefore, the hit rate and the correct rejection rate on a recognition memory test can be affected by both the memory strength of the studied items and the criterion used to make that judgment. Yet most neuroimaging studies of the successful retrieval effect (a contrast between hits and correct rejections) fail to measure or consider decision criterion. The goal of the current fMRI study with ninety-five participants was to directly manipulate decision criteria on two tests of recognition memory by varying the likelihood of an item's prior occurrence. Our results indicate that regions of the lateral prefrontal and parietal cortex associated with successful retrieval are significantly more active when using conservative criteria than liberal criteria. Furthermore, our results reveal that activity in these regions associated with successful retrieval can be accounted for by individual differences in the conservativeness of the decision criterion above and beyond any differences in memory strength. These results expound on the role of cognitive control in recognition memory and the neural mechanisms that mediate this processing.


Subject(s)
Brain/physiology , Decision Making/physiology , Judgment/physiology , Recognition, Psychology/physiology , Adult , Brain Mapping , Female , Humans , Magnetic Resonance Imaging , Male , Middle Aged
11.
Transpl Infect Dis ; 16(4): 648-52, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24966111

ABSTRACT

A 20-year-old woman, with renal transplant complicated by recurrence of focal segmental glomerulosclerosis and post-transplant lymphoproliferative disorder, presented nearly 2 years after transplantation with fever, conjunctivitis, and sinus congestion. She was found to have severe adenovirus (ADV)-induced granulomatous interstitial nephritis, confirmed by immunohistochemical staining for ADV in the renal biopsy, without urinary symptoms, hematuria, or laboratory evidence of a change in allograft function. Fever, upper respiratory tract symptoms, and evidence of adenoviral infection in the allograft resolved with decreased immunosuppression and treatment with cidofovir and intravenous immunoglobulin. Creatinine rose during treatment and remained elevated, possibly related to cidofovir nephrotoxicity. Despite therapy and continued reduction in immunosuppression, asymptomatic low-level viremia persisted for a year. In renal transplant patients with ADV infection, allograft involvement should be highly suspected even without overt urinary symptoms or laboratory evidence of allograft dysfunction. Demonstration of allograft involvement may prompt alternative management that could limit continued allograft infection. No clear recommendations exist for management of asymptomatic ADV viremia in solid organ transplant patients.


Subject(s)
Adenoviridae/classification , Adenovirus Infections, Human/virology , Kidney Transplantation/adverse effects , Nephritis, Interstitial/virology , Respiratory Tract Infections/virology , Adenoviridae/isolation & purification , Adenovirus Infections, Human/drug therapy , Adenovirus Infections, Human/pathology , Antiviral Agents/administration & dosage , Antiviral Agents/therapeutic use , Cidofovir , Cytosine/administration & dosage , Cytosine/analogs & derivatives , Cytosine/therapeutic use , Drug Therapy, Combination , Female , Humans , Immunocompromised Host , Immunoglobulins, Intravenous/administration & dosage , Immunoglobulins, Intravenous/therapeutic use , Organophosphonates/administration & dosage , Organophosphonates/therapeutic use , Viremia , Young Adult
12.
Mol Psychiatry ; 19(2): 253-8, 2014 Feb.
Article in English | MEDLINE | ID: mdl-23358156

ABSTRACT

Intelligence in childhood, as measured by psychometric cognitive tests, is a strong predictor of many important life outcomes, including educational attainment, income, health and lifespan. Results from twin, family and adoption studies are consistent with general intelligence being highly heritable and genetically stable throughout the life course. No robustly associated genetic loci or variants for childhood intelligence have been reported. Here, we report the first genome-wide association study (GWAS) on childhood intelligence (age range 6-18 years) from 17,989 individuals in six discovery and three replication samples. Although no individual single-nucleotide polymorphisms (SNPs) were detected with genome-wide significance, we show that the aggregate effects of common SNPs explain 22-46% of phenotypic variation in childhood intelligence in the three largest cohorts (P=3.9 × 10(-15), 0.014 and 0.028). FNBP1L, previously reported to be the most significantly associated gene for adult intelligence, was also significantly associated with childhood intelligence (P=0.003). Polygenic prediction analyses resulted in a significant correlation between predictor and outcome in all replication cohorts. The proportion of childhood intelligence explained by the predictor reached 1.2% (P=6 × 10(-5)), 3.5% (P=10(-3)) and 0.5% (P=6 × 10(-5)) in three independent validation cohorts. Given the sample sizes, these genetic prediction results are consistent with expectations if the genetic architecture of childhood intelligence is like that of body mass index or height. Our study provides molecular support for the heritability and polygenic nature of childhood intelligence. Larger sample sizes will be required to detect individual variants with genome-wide significance.


Subject(s)
Carrier Proteins/genetics , Intelligence/genetics , Multifactorial Inheritance , Adolescent , Child , Cohort Studies , Female , Genome-Wide Association Study , Genotyping Techniques , Humans , Intelligence Tests , Male , Phenotype , Polymorphism, Single Nucleotide , Quantitative Trait, Heritable , Software , White People/genetics
13.
Pediatr Pulmonol ; 49(3): 230-7, 2014 Mar.
Article in English | MEDLINE | ID: mdl-23765686

ABSTRACT

OBJECTIVES: The prevalence of methicillin-resistant Staphylococcus aureus (MRSA) in cystic fibrosis (CF) patients in the United States is approximately 25%. Little is known about the relative proportion of hospital- versus community-associated strains or the antimicrobial susceptibility of MRSA in different CF centers. We hypothesized that the majority of MRSA isolates obtained from children with CF are those endemic in the hospital and that those associated with community acquisition (SCCmec IV) would be more resistant than typically seen in non-CF MRSA isolates. METHODS: We studied MRSA strains from seven pediatric CF centers to determine the clonal distribution based on DNA sequencing of the staphylococcal protein A gene (spa typing), the type of staphylococcal chromosomal cassette mec (SCCmec), and the proportion of strains with Panton-Valentine leukocidin (PVL). Antimicrobial susceptibility to systemic and topical antibiotics was compared between different MRSA types. RESULTS: We analyzed 277 MRSA isolates from unique patients (mean age 11.15 ± 4.77 years, 55% male). Seventy % of isolates were SCCmec II PVL negative and the remainder SCCmec IV. Overall 17% MRSA strains were PVL positive (all SCCmec IV). Spa typing of 118 isolates showed most of the SCCmec II strains being t002, while SCCmec IV PVL positive isolates were t008, and SCCmec IV PVL negative isolates represented a variety of spa-types. The proportions of SCCmec II strains and spa-types were similar among centers. Overall rates of resistance to trimethoprim-sulfamethoxazole (4%), tetracycline (7%), tigecycline (0.4%), linezolid (0.4%) as well as fosfomycin (0.4%), fusidic acid (3%), and mupirocin (1%) were low. No strains were resistant to vancomycin. SCCmec II strains had higher rates of resistance to ciprofloxacin and clindamycin (P < 0.001) than SCCmec IV strains. CONCLUSIONS: In this U.S. study, most MRSA isolates in the pediatric CF population were SCCmec II PVL negative. Rates of resistance were low, including to older and orally available antibiotics such as trimethoprim-sulfamethoxazole.


Subject(s)
Anti-Bacterial Agents/pharmacology , Cystic Fibrosis/microbiology , DNA, Bacterial/genetics , Methicillin-Resistant Staphylococcus aureus/genetics , Pneumonia, Staphylococcal/microbiology , Acetamides/pharmacology , Adolescent , Bacterial Proteins/genetics , Bacterial Toxins/genetics , Bronchoscopy , Child , Child, Preschool , Cohort Studies , Cystic Fibrosis/complications , Exotoxins/genetics , Female , Fosfomycin/pharmacology , Fusidic Acid/pharmacology , Humans , Leukocidins/genetics , Linezolid , Male , Methicillin-Resistant Staphylococcus aureus/drug effects , Microbial Sensitivity Tests , Minocycline/analogs & derivatives , Minocycline/pharmacology , Molecular Typing , Mupirocin/pharmacology , Oxazolidinones/pharmacology , Penicillin-Binding Proteins , Pharynx/microbiology , Pneumonia, Staphylococcal/complications , Sequence Analysis, DNA , Sputum/microbiology , Staphylococcal Infections/complications , Staphylococcal Infections/drug therapy , Staphylococcal Infections/microbiology , Staphylococcal Protein A/genetics , Tetracycline/pharmacology , Tigecycline , Trimethoprim, Sulfamethoxazole Drug Combination/pharmacology , United States
14.
Environ Sci Technol ; 45(2): 392-9, 2011 Jan 15.
Article in English | MEDLINE | ID: mdl-21142061

ABSTRACT

Open-pit gold mines encompass thousands of hectares of disturbed materials that are often naturally enriched in mercury (Hg). The objective of this study was to estimate annual non-point-source Hg emissions from two active gold mines in Nevada. This was achieved by measuring diel and seasonally representative Hg fluxes from mesocosms of materials collected from each mine. These measurements provided a framework for scaling emissions over space and time at each mine by identifying the important variables correlated with Hg flux. The validity of these correlations was tested by comparisons with measurements conducted in situ at the mines. Of the average diel fluxes obtained in situ (92 daily flux measurements), 81% were within the 95% prediction limits of the regressions developed from the laboratory-derived data. Some surfaces at the mines could not be simulated in the laboratory setting (e.g., material actively leached by cyanide solution and tailings saturated with cyanide solution), and as such in situ data were applied for scaling. Based on the surface areas of the materials and environmental conditions at the mines during the year of study, non-point-source Hg releases were estimated to be 19 and 109 kg·year(-1). These account for 56% and 14%, respectively, of the overall emissions from each mine (point + nonpoint sources). Material being heap-leached and active tailings impoundments were the major contributors to the releases (>60% combined) suggesting that as mining operations cease, releases will decline.


Subject(s)
Environmental Monitoring/methods , Environmental Pollutants/analysis , Industrial Waste/analysis , Mercury/analysis , Environmental Pollution/statistics & numerical data , Geographic Information Systems , Gold , Mining
15.
Sci Total Environ ; 409(3): 514-22, 2011 Jan 01.
Article in English | MEDLINE | ID: mdl-21078520

ABSTRACT

Mercury (Hg) may be naturally associated with the rock units hosting precious and base metal deposits. Active gold mines are known to have point source releases of Hg associated with ore processing facilities. The nonpoint source release of Hg to the air from the large area (hundreds to thousands of hectares) of disturbed and processed material at industrial open pit gold mines has not been quantified. This paper describes the field data collected as part of a project focused on estimating nonpoint source emissions of Hg from two active mines in Nevada, USA. In situ Hg flux data were collected on diel and seasonal time steps using a dynamic flux chamber from representative mine surfaces. Hg fluxes ranged from <1500 ng m(-2) day(-1) for waste rock piles (0.6-3.5 µg g(-1)) to 684,000 ng m(-2) day(-1) for tailings (2.8-58 µg g(-1)). Releases were positively correlated with material Hg concentrations, surface grain size, and moisture content. Highest Hg releases occurred from materials under active cyanide leaching and from tailings impoundments containing processed high-grade ore. Data collected indicate that as mine sites are reclaimed and material disturbance ceases, emissions will decline. Additionally local cycling of atmospheric Hg (deposition and re-emission) was found to occur.


Subject(s)
Environmental Monitoring , Environmental Pollutants/analysis , Gold , Mercury/analysis , Mining , Nevada , Particle Size
16.
Genes Immun ; 8(8): 684-90, 2007 Dec.
Article in English | MEDLINE | ID: mdl-17917677

ABSTRACT

Atherogenesis is a chronic inflammatory process. Critical in the inflammation process is monocyte chemoattractant protein-1 (MCP-1). To locate genomic regions that affect circulating MCP-1 levels, a genome-wide linkage scan was conducted in a sample of whites and blacks. Phenotype and genetic marker data were available for 2501 white and 513 black participants in the National Heart Lung Blood Institute Family Heart Study follow-up examination. Heritability for MCP-1 was 0.37 in whites and 0.47 in blacks after adjusting for the effects of sex, age, age-sex interaction, smoking status, lifetime smoking exposure (pack-years) and field center. Significant linkage was observed for MCP-1 in a combined black and white sample on chromosome 3 (logarithm of the odds ratio (LOD)=3.5 at 78 cM, P=0.0001) and suggestive linkage was observed in whites on chromosome 5 (LOD=1.8 at 128 cM, P=0.002). Located under the linkage peak on chromosome 3 is the chemokine receptor gene cluster, including CCR2, the receptor for MCP-1. This study provides preliminary evidence linking genetic variation in a receptor to circulating levels of its ligand, as previously demonstrated for the low-density lipoprotein receptor. Further characterization of these chromosomal regions is needed to identify the functional mutations associated with circulating levels of MCP-1.


Subject(s)
Atherosclerosis/genetics , Chemokine CCL2/blood , Chromosomes, Human, Pair 3/genetics , Genetic Linkage , Receptors, Chemokine/genetics , Adult , Aged , Aged, 80 and over , Black People/genetics , Female , Humans , Male , Middle Aged , Multigene Family , National Heart, Lung, and Blood Institute (U.S.) , United States/ethnology , White People/genetics
17.
Pharmacogenomics J ; 7(2): 112-22, 2007 Apr.
Article in English | MEDLINE | ID: mdl-16702981

ABSTRACT

In a double-blind, outcome trial conducted in hypertensive patients randomized to chlorthalidone (C), amlodipine (A), lisinopril (L), or doxazosin (D), the alpha-adducin Gly460Trp polymorphism was typed (n=36 913). Mean follow-up was 4.9 years. Relative risks (RRs) of chlorthalidone versus other treatments were compared between genotypes (Gly/Gly+Gly/Trp versus Trp/Trp). Primary outcome was coronary heart disease (CHD). Coronary heart disease incidence did not differ among treatments or genotypes nor was there any interaction between treatment and genotype (P=0.660). Subgroup analyses indicated that Trp allele carriers had greater CHD risk with C versus A+L in women (RR=1.31) but not men (RR=0.91) with no RR gender differences for non-carriers (gender-gene-treatment interaction, P=0.002). The alpha-adducin gene is not an important modifier of antihypertensive treatment on cardiovascular risk, but women Trp allele carriers may have increased CHD risk if treated with C versus A or L. This must be confirmed to have implications for hypertension treatment.


Subject(s)
Antihypertensive Agents/therapeutic use , Calmodulin-Binding Proteins/genetics , Coronary Disease/genetics , Coronary Disease/prevention & control , Hypertension/drug therapy , Hypertension/genetics , Polymorphism, Genetic , Aged , Amlodipine/therapeutic use , Antihypertensive Agents/pharmacology , Blood Pressure/drug effects , Chlorthalidone/therapeutic use , Coronary Disease/epidemiology , Double-Blind Method , Doxazosin/therapeutic use , Female , Gene Frequency , Genetic Predisposition to Disease , Genotype , Glycine , Humans , Hypertension/complications , Hypertension/physiopathology , Incidence , Kaplan-Meier Estimate , Lisinopril/therapeutic use , Male , Middle Aged , Patient Selection , Proportional Hazards Models , Risk Assessment , Risk Factors , Sex Factors , Time Factors , Treatment Outcome , Tryptophan
18.
Diabetologia ; 49(10): 2329-36, 2006 Oct.
Article in English | MEDLINE | ID: mdl-16906437

ABSTRACT

AIMS/HYPOTHESIS: While there are sex-related differences in both the prevalence of type 2 diabetes mellitus and disease risk factors, there is only limited research on sex-specific influences on type 2 diabetes aetiology within the same study population. Thus, we assessed genotype-by-sex interaction using a liability threshold model in an attempt to localise sex-specific type 2 diabetes quantitative trait loci (QTLs). SUBJECTS, MATERIALS AND METHODS: Hypertensive siblings and their offspring and/or parents in the Hypertension Genetic Epidemiology Network of the Family Blood Pressure Program were recruited from five field centres. The diabetic phenotype was adjusted for race, study centre, age and non-linear age effects. In total, 567 diabetic individuals were identified in 385 families. Variance component linkage analyses in the combined sample and stratified by sex and race were performed (SOLAR program) using race-specific marker allele frequencies derived from a random sample of participants at each centre. RESULTS: We observed a QTL-specific genotype-by-sex interaction (p=0.009) on chromosome 17 at 31 cM, with females displaying a robust adjusted logarithm of odds (LOD) of 3.0 compared with 0.2 in males and 1.3 in the combined sample. Three additional regions demonstrating suggestive evidence for linkage were detected: chromosomes 2 and 5 in the female sample and chromosome 22 (adjusted LOD=1.9) in the combined sample. CONCLUSIONS/INTERPRETATION: These findings suggest that multiple genes may regulate susceptibility to type 2 diabetes, demonstrating the importance of considering the interaction of genes and environment in the aetiology of common complex traits.


Subject(s)
Diabetes Mellitus, Type 2/genetics , Quantitative Trait Loci , Adult , Aged , Diabetes Mellitus, Type 2/epidemiology , Female , Genotype , Humans , Hypertension/epidemiology , Hypertension/genetics , Male , Middle Aged , Nuclear Family , Phenotype , Prevalence , Racial Groups/genetics , Risk Factors , Sex Characteristics , United States/epidemiology
19.
Am J Transplant ; 6(1): 219-24, 2006 Jan.
Article in English | MEDLINE | ID: mdl-16433779

ABSTRACT

Pseudomonas aeruginosa commonly colonizes the airways of patients with cystic fibrosis (CF). However, the occurrence of bacteremia with metastatic infection to the eye causing endogenous endophthalmitis is very rare. In the setting of lung transplantation, the significance of P. aeruginosa bacteremia in patients with CF whose airways are colonized before transplantation is unknown. We report a case of bilateral P. aeruginosa endogenous endophthalmitis in a patient with CF after lung transplant without documented bacteremia. The patient presented with acute eye symptoms in the presence of a left atrial thrombus and the disease followed a rapidly progressive course requiring aggressive medical-surgical treatment. Typically P. aeruginosa endophthalmitis has been associated with a poor visual prognosis. However, with combined medical-surgical management this patient retained useful vision in one eye without having retinal detachment or requiring enucleation. Endogenous endophthalmitis should be considered in the differential diagnosis of ocular complaints in patients with CF after lung transplant.


Subject(s)
Cystic Fibrosis/surgery , Endophthalmitis/diagnosis , Lung Transplantation , Pseudomonas Infections/diagnosis , Adult , Cystic Fibrosis/complications , Cystic Fibrosis/diagnostic imaging , DNA, Bacterial/analysis , Diagnosis, Differential , Endophthalmitis/microbiology , Female , Humans , Lung/chemistry , Lung/diagnostic imaging , Lung/microbiology , Pseudomonas Infections/etiology , Pseudomonas aeruginosa/isolation & purification , Retina/pathology , Tomography, X-Ray Computed , Ultrasonography , Vitreous Body/chemistry , Vitreous Body/diagnostic imaging , Vitreous Body/microbiology
20.
Int J Obes (Lond) ; 29(6): 639-49, 2005 Jun.
Article in English | MEDLINE | ID: mdl-15809668

ABSTRACT

OBJECTIVE: To conduct a full genome search for genes potentially influencing two related phenotypes: body mass index (BMI, kg/m2) and percent body fat (PBF) from bioelectric impedance in men and women. DESIGN: A total of 3383 participants, 1348 men and 2035 women; recruitment was initiated with hypertensive sibpairs and expanded to first-degree relatives in a multicenter study of hypertension genetics. MEASUREMENTS: Genotypes for 387 highly polymorphic markers spaced to provide a 10 cM map (CHLC-8) were generated by the NHLBI Mammalian Genotyping Service (Marshfield, WI, USA). Quantitative trait loci for obesity phenotypes, BMI and PBF, were examined with a variance components method using SOLAR, adjusting for hypertensive status, ethnicity, center, age, age2, sex, and age2 x sex. As we detected a significant genotype-by-sex interaction in initial models and because of the importance of sex effects in the expression of these phenotypes, models thereafter were stratified by sex. No genotype-by-ethnicity interactions were found. RESULTS: A QTL influencing PBF in women was detected on chromosome12q (12q24.3-12q24.32, maximum empirical LOD score=3.8); a QTL influencing this phenotype in men was found on chromosome 15q (15q25.3, maximum empirical LOD score=3.0). These QTLs were detected in African-American and white women (12q) and men (15q). QTLs influencing both BMI and PBF were found over a broad region on chromosome 3 in men. QTLs on chromosomes 3 and 12 were found in the combined sample of men and women, but with weaker significance. CONCLUSION: The locations with highest LOD scores have been previously reported for obesity phenotypes, indicating that at least two genomic regions influence obesity-related traits. Furthermore, our results indicate the importance of considering context-dependent effects in the search for obesity QTLs.


Subject(s)
Black or African American , Body Composition/genetics , Obesity/genetics , Quantitative Trait Loci , Sex Factors , White People , Adult , Aged , Body Mass Index , Chromosomes, Human, Pair 12 , Chromosomes, Human, Pair 15 , Chromosomes, Human, Pair 3 , Female , Humans , Hypertension/ethnology , Hypertension/genetics , Hypertension/physiopathology , Lod Score , Male , Middle Aged , Obesity/ethnology , Obesity/physiopathology
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