Microorganisms uniquely capture and predict stony coral tissue loss disease and hurricane disturbance impacts on US Virgin Island reefs.

Coral reef ecosystems are now commonly affected by major climate and disease disturbances. Disturbance impacts are typically recorded using reef benthic cover, but this may be less reflective of other ecosystem processes. To explore the potential for reef water-based disturbance indicators, we conducted a 7-year time series on US Virgin Island reefs where we examined benthic cover and reef water nutrients and microorganisms from 2016 to 2022, which included two major disturbances: hurricanes Irma and Maria in 2017 and the stony coral tissue loss disease outbreak starting in 2020. The disease outbreak coincided with the largest changes in the benthic habitat, with increases in the percent cover of turf algae and Ramicrusta, an invasive alga. While sampling timepoint contributed most to changes in reef water nutrient composition and microbial community beta diversity, both disturbances led to increases in ammonium concentration, a mechanism likely contributing to observed microbial community shifts. We identified 10 microbial taxa that were sensitive and predictive of increasing ammonium concentration. This included the decline of the oligotrophic and photoautotrophic Prochlorococcus and the enrichment of heterotrophic taxa. As disturbances impact reefs, the changing nutrient and microbial regimes may foster a type of microbialization, a process that hastens reef degradation.

Multiscale spatio-temporal patterns of boat noise on U.S. Virgin Island coral reefs.

Sound-sensitive organisms are abundant on coral reefs. Accordingly, experiments suggest that boat noise could elicit adverse effects on coral reef organisms. Yet, there are few data quantifying boat noise prevalence on coral reefs. We use long-term passive acoustic recordings at nine coral reefs and one sandy comparison site in a marine protected area to quantify spatio-temporal variation in boat noise and its effect on the soundscape. Boat noise was most common at reefs with high coral cover and fish density, and temporal patterns reflected patterns of human activity. Boat noise significantly increased low-frequency sound levels at the monitored sites. With boat noise present, the peak frequencies of the natural soundscape shifted from higher frequencies to the lower frequencies frequently used in fish communication. Taken together, the spectral overlap between boat noise and fish communication and the elevated boat detections on reefs with biological densities raises concern for coral reef organisms.

Ambient noise and temporal patterns of boat activity in the US Virgin Islands National Park.

Human activity is contributing increasing noise to marine ecosystems. Recent studies have examined the effects of boat noise on marine fishes, but there is limited understanding of the prevalence of this type of sound source. This investigation tracks vessel noise on three reefs in the US Virgin Islands National Park over four months in 2013. Ambient noise levels ranged from 106 to 129dBrms re 1µPa (100Hz-20kHz). Boat noise occurred in 6-12% of samples. In the presence of boat noise, ambient noise in a low-frequency band (100-1000Hz) increased by >7dB above baseline levels and sound levels were significantly higher. The frequency with the most acoustic energy shifted to a significantly lower frequency when boat noise was present during the day. These results indicate the abundance of boat noise and its overlap with reef organism sound production, raising concern for the communication abilities of these animals.