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1.
Physiol Plant ; 176(3): e14390, 2024.
Article in English | MEDLINE | ID: mdl-38899466

ABSTRACT

A previously identified wheat drought stress responsive Universal stress protein, TaUSP_3B-1 has been found to work in an auxin dependent manner in the plant root tissues in the differentiation zone. We also found a novel interacting partner, TaGolS, which physically interacts with TaUSP_3B-1 and colocalizes in the endoplasmic reticulum. TaGolS is a key enzyme in the RFO (Raffinose oligosaccharides) biosynthesis which is well reported to provide tolerance under water deficit conditions. TaUSP_3B-1 overexpression lines showed an early flowering phenotype under drought stress which might be attributed to the increased levels of AtTPPB and AtTPS transcripts under drought stress. Moreover, at the cellular levels ER stress induced TaUSP_3B-1 transcription and provides tolerance in both adaptive and acute ER stress via less ROS accumulation in the overexpression lines. TaUSP_3B-1 overexpression plants had increased silique numbers and a denser root architecture as compared to the WT plants under drought stress.


Subject(s)
Droughts , Endoplasmic Reticulum Stress , Gene Expression Regulation, Plant , Indoleacetic Acids , Plant Proteins , Indoleacetic Acids/metabolism , Plant Proteins/metabolism , Plant Proteins/genetics , Endoplasmic Reticulum Stress/physiology , Stress, Physiological/genetics , Triticum/genetics , Triticum/physiology , Triticum/metabolism , Plant Roots/metabolism , Plant Roots/genetics , Plant Roots/physiology , Plants, Genetically Modified , Reactive Oxygen Species/metabolism , Endoplasmic Reticulum/metabolism
3.
Nat Methods ; 21(3): 371, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38472464
4.
Nat Methods ; 21(1): 10, 2024 Jan.
Article in English | MEDLINE | ID: mdl-38212551
5.
Nat Methods ; 20(12): 1870, 2023 Dec.
Article in English | MEDLINE | ID: mdl-38057517
6.
Nat Methods ; 20(11): 1622, 2023 Nov.
Article in English | MEDLINE | ID: mdl-37935983
7.
Nanoscale Adv ; 5(19): 5332-5339, 2023 Sep 26.
Article in English | MEDLINE | ID: mdl-37767041

ABSTRACT

Molecular hydrogen (H2) production by the electrochemical hydrogen evolution reaction (HER) is being actively explored for non-precious metal-based electrocatalysts that are earth-abundant and low cost like MoS2. Although it is acid-stable, its applicability is limited by catalytically inactive basal planes, poor electrical transport and inefficient charge transfer at the interface. Therefore, the present work examines its bilayer van der Waals heterostructure (vdW HTS). The second constituent monolayer boron phosphide (BP) is advantageous as an electrode material owing to its chemical stability in both oxygen and water environments. Here, we have performed first-principles based calculations under the framework of density functional theory (DFT) for the HER in an electrochemical double layer model with the BP monolayer, MoS2/BP and MoSSe/BP vdW HTSs. The climbing image nudged elastic band method (CI-NEB) has been employed to determine the minimum energy pathways for Tafel and Heyrovsky reactions. The calculations reveal that the Tafel reaction shows no reaction barrier. Thereafter, for the Heyrovsky reaction, we obtained a low reaction barrier in the vdW HTSs as compared to that in the BP monolayer. Subsequently, we have observed no significant difference in the reaction profile of MoS2/BP and MoSSe/BP vdW HTSs in the case of 2 × 2 supercell configuration. However, in the case of 3 × 3 and 4 × 4 configurations, MoSSe/BP shows a feasible Heyrovsky reaction with no reaction barrier. The coverages with 1/4H+ concentration (conc.) deduced high coverage with low conc. and low coverage with high conc. to be apt for the HER via the Heyrovsky reaction path. Finally, on observing the activation barrier of the Heyrovsky pathway along with that of second H adsorption at the surface, the Heyrovsky path is expected to be favoured.

9.
Nat Methods ; 20(8): 1130, 2023 08.
Article in English | MEDLINE | ID: mdl-37553401

Subject(s)
Nanopores , Phosphorylation
10.
Nat Methods ; 20(7): 983, 2023 Jul.
Article in English | MEDLINE | ID: mdl-37434010
11.
Nano Lett ; 23(13): 5975-5980, 2023 Jul 12.
Article in English | MEDLINE | ID: mdl-37341711

ABSTRACT

Phonon scattering at grain boundaries (GBs) is significant in controlling the nanoscale device thermal conductivity. However, GBs could also act as waveguides for selected modes. To measure localized GB phonon modes, milli-electron volt (meV) energy resolution is needed with subnanometer spatial resolution. Using monochromated electron energy loss spectroscopy (EELS) in the scanning transmission electron microscope (STEM) we have mapped the 60 meV optic mode across GBs in silicon at atomic resolution and compared it to calculated phonon densities of states (DOS). The intensity is strongly reduced at GBs characterized by the presence of 5- and 7-fold rings where bond angles differ from the bulk. The excellent agreement between theory and experiment strongly supports the existence of localized phonon modes and thus of GBs acting as waveguides.

12.
Plant Cell Rep ; 42(9): 1487-1501, 2023 Sep.
Article in English | MEDLINE | ID: mdl-37341826

ABSTRACT

KEY MESSAGE: TaUSPs are localized in Endoplasmic reticulum and form homo and hetero dimers within themselves. They play significant role in multiple abiotic stress responses in yeast heterologous system and in plants. Universal Stress Proteins are stress responsive proteins present in a variety of life forms ranging from bacteria to multicellular plants and animals. In this study we have identified 85 TaUSP genes in the wheat genome and have characterised their abiotic stress responsive members in yeast under different stress conditions. Localization and Y2H studies suggest that wheat, USP proteins are localized in the ER complex, and extensively crosstalk amongst themselves through forming hetero and homodimers. Expression analysis of these TaUSP genes suggests their role in adaptation to multiple abiotic stresses. TaUSP_5D-1 was found to have some DNA binding activity in yeast. Certain abiotic stress responsive TaUSP genes are found to impart tolerance to temperature stress, oxidative stress, ER stress (DTT treatment) and LiCl2 stress in the yeast heterologous system. TaUSP_5D-1 overexpression in A. thaliana imparts drought tolerance via better lateral root network in transgenic lines. The TaUSP represents an important repertoire of genes for engineering abiotic stress responsiveness in crop plants.


Subject(s)
Plant Proteins , Triticum , Triticum/genetics , Triticum/metabolism , Plant Proteins/metabolism , Heat-Shock Proteins/genetics , Saccharomyces cerevisiae/metabolism , Plants, Genetically Modified/metabolism , Stress, Physiological/genetics , Gene Expression Regulation, Plant/genetics , Droughts
13.
Nat Methods ; 20(6): 785, 2023 Jun.
Article in English | MEDLINE | ID: mdl-37296342

Subject(s)
Language , Proteins , Antibodies
16.
Nat Methods ; 20(2): 176, 2023 02.
Article in English | MEDLINE | ID: mdl-36765141
17.
Nat Methods ; 20(1): 33, 2023 01.
Article in English | MEDLINE | ID: mdl-36635547

Subject(s)
Metabolomics , Software
18.
J Oral Maxillofac Pathol ; 27(4): 727-734, 2023.
Article in English | MEDLINE | ID: mdl-38304525

ABSTRACT

Background: Cell adhesion molecules (CAMs) are found on the surface of all cells, where they allow dynamic processes to take place. These include cadherins, integrins, selectins and Immunoglobulin superfamily. Directly associated with ß-integrin tails is a multidomain protein known as paxillin. However, CAMs participate in cell-cell and extracellular matrix-cell interactions during histomorphogenesis in the various phases of odontogenesis. Some tumours or cysts like ameloblastoma (AB) or odontogenic keratocyst (OKC) having odontogenic origin show disturbance in the interaction of these CAMs. Hence, the assessment of paxillin expression in AB and OKC was carried out. Materials and Methods: The present observational study comprised 30 clinically and histologically confirmed cases of AB and OKC. All the slides were stained immunohistochemically using a paxillin antibody. Results: Upon comparison of staining intensity of paxillin among AB and OKC showed statistically significant result, whereas quantitative staining and final summation showed non-significant result. Gender-wise comparison of paxillin staining intensity, quantitative staining and final summation among OKC showed significant result; however, in AB, staining intensity showed non-significant result, whereas quantitative staining and final summation showed significant result. Conclusion: Paxillin has the greatest influence on tissue morphogenesis and development. The regulation of cell mobility is aided by the multiple roles that paxillin plays in a range of cells and tissues. However, further studies using a large sample size, along with other molecular analytical methods, may be essential to draw a definite conclusion about the association of paxillin and its exact function in OKC and AB.

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