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1.
Haemophilia ; 23(6): e488-e496, 2017 Nov.
Article in English | MEDLINE | ID: mdl-28960694

ABSTRACT

INTRODUCTION: Factor XI (FXI) deficiency is a rare disorder with molecular heterogeneity in Caucasians but relatively frequent and molecularly homogeneous in certain populations. AIM: To characterize FXI deficiency in a Spanish town of 60 000 inhabitants. METHODS: A total of 324 764 APTT tests were screened during 20 years. FXI was evaluated by FXI:C and by Western blot. Genetic analysis of F11 was performed by sequencing, multiplex ligation-dependent probe amplification and genotyping. RESULTS: Our study identified 46 unrelated cases and 170 relatives with FXI deficiency carrying 12 different genetic defects. p.Cys56Arg, described as founder mutation in the French-Basque population, was identified in 109 subjects from 24 unrelated families. This mutation was also identified in 2% of the general population. p.Cys416Tyr, c.1693G>A and p.Pro538Leu were identified in 7, 6 and 2 unrelated families, respectively. NGS analysis of the whole F11 gene revealed a common haplotype for each of the four recurrent mutations, suggesting a founder effect. The analysis of plasma FXI of four p.Pro538Leu homozygous carriers revealed that this variant was not activated by FXIIa. We identified four mutations previously described in other Caucasian subjects with FXI deficiency (p.Lys536Asn; p.Thr322Ile, p.Arg268Cys and c.325G>A) and four new gene defects: p.(Cys599Tyr) potentially causing a functional deficiency, p.(Ile426Thr), p.(Ile592Thr) and the first worldwide duplication of 1653 bp involving exons 8 and 9. Bleeding was rare and mild. CONCLUSIONS: Our population-cohort study supplies new evidences that FXI deficiency in Caucasians is more common than previously thought and confirmed the wide underlying genetic heterogeneity, caused by both recurrent and sporadic mutations.


Subject(s)
Factor XI Deficiency/genetics , Factor XI/genetics , Gene Duplication , Mutation , Adolescent , Adult , Aged , Aged, 80 and over , Cohort Studies , Factor XI Deficiency/blood , Factor XI Deficiency/epidemiology , Female , Gene Frequency , Genotype , Haplotypes , Humans , Incidence , Male , Middle Aged , Pedigree , Sequence Analysis, DNA , Spain/epidemiology
2.
J Thromb Haemost ; 13(10): 1867-77, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26286125

ABSTRACT

BACKGROUND: The relationships of thrombin generation (TG) with cardiovascular disease risk are underevaluated in population-based cohorts. OBJECTIVES: To evaluate the relationships of TG influenced by the contact and tissue factor coagulation pathways ex vivo with common single-nucleotide polymorphisms (SNPs) and incident cardiovascular disease and stroke. PATIENTS/METHODS: We measured peak TG (pTG) in baseline plasma samples of Cardiovascular Health Study participants (n = 5411), both with and without inhibitory anti-factor XIa antibody (pTG/FXIa(-) ). We evaluated their associations with ~ 50 000 SNPs by using the IBCv2 genotyping array, and with incident cardiovascular disease and stroke events over a median follow-up of 13.2 years. RESULTS: The minor allele for an SNP in the FXII gene (F12), rs1801020, was associated with lower pTG in European-Americans (ß = - 34.2 ± 3.5 nm; P = 3.3 × 10(-22) ; minor allele frequency [MAF] = 0.23) and African-Americans (ß = - 31.1 ± 7.9 nm; P = 9.0 × 10(-5) ; MAF = 0.42). Lower FXIa-independent pTG (pTG/FXIa(-) ) was associated with the F12 rs1801020 minor allele, and higher pTG/FXIa(-) was associated with the ABO SNP rs657152 minor allele (ß = 16.3 nm; P = 4.3 × 10(-9) ; MAF = 0.37). The risk factor-adjusted ischemic stroke hazard ratios were 1.09 (95% confidence interval CI 1.01-1.17; P = 0.03) for pTG, 1.06 (95% CI 0.98-1.15; P = 0.17) for pTG/FXIa(-) , and 1.11 (95% CI 1.02-1.21; P = 0.02) for FXIa-dependent pTG (pTG/FXIa(+) ), per one standard deviation increment (n = 834 ischemic strokes). In a multicohort candidate gene analysis, rs1801020 was not associated with incident ischemic stroke (ß = - 0.02; standard error = 0.08; P = 0.81). CONCLUSIONS: These results support the importance of contact activation pathway-dependent TG as a risk factor for ischemic stroke, and indicate the importance of F12 SNPs for TG ex vivo and in vivo.


Subject(s)
Blood Coagulation/genetics , Brain Ischemia/genetics , Factor XII/genetics , Stroke/genetics , Thrombin/metabolism , Black or African American/genetics , Age Factors , Aged , Brain Ischemia/blood , Brain Ischemia/ethnology , Factor XII/metabolism , Female , Gene Frequency , Genetic Predisposition to Disease , Humans , Incidence , Male , Phenotype , Polymorphism, Single Nucleotide , Prospective Studies , Risk Assessment , Risk Factors , Stroke/blood , Stroke/ethnology , Time Factors , United States/epidemiology , White People/genetics
4.
Appl Health Econ Health Policy ; 13(2): 233-42, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25652150

ABSTRACT

BACKGROUND: Patients with venous thromboembolism (VTE) commonly have an underlying genetic predisposition. However, genetic tests nowadays in use have very low sensitivity for identifying subjects at risk of VTE. Thrombo inCode(®) is a new genetic tool that has demonstrated very good sensitivity, thanks to very good coverage of the genetic variants that modify the function of the coagulation pathway. OBJECTIVE: To conduct an economic analysis of risk assessment of VTE from the perspective of the Spanish National Health System with Thrombo inCode(®) (a clinical-genetic function for assessing the risk of VTE) versus the conventional/standard method used to date (factor V Leiden and prothrombin G20210A). METHODS: An economic model was created from the National Health System perspective, using a decision tree in patients aged 45 years with a life expectancy of 81 years. The predictive capacity of VTE, based on identification of thrombophilia using Thrombo inCode(®) and using the standard method, was obtained from two case-control studies conducted in two different populations (S. PAU and MARTHA; 1,451 patients in all). Although this is not always the case, patients who were identified as suffering from thrombophilia were subject to preventive treatment of VTE with warfarin, leading to a reduction in the number of VTE events and an increased risk of severe bleeding. The health state utilities (quality-adjusted life-years [QALYs]) and costs (in 2013 EUR values) were obtained from the literature and Spanish sources. RESULTS: On the basis of a price of EUR 180 for Thrombo inCode(®), this would be the dominant option (more effective and with lower costs than the standard method) in both populations. The Monte Carlo probabilistic analyses indicate that the dominance would occur in 100 % of the simulations in both populations. The threshold price of Thrombo inCode(®) needed to reach the incremental cost-effectiveness ratio (ICER) generally accepted in Spain (EUR 30,000 per QALY gained) would be between EUR 3,950 (in the MARTHA population) and EUR 11,993 (in the S. PAU population). CONCLUSION: According to the economic model, Thrombo inCode(®) is the dominant option in assessing the risk of VTE, compared with the standard method currently used.


Subject(s)
Cost-Benefit Analysis , Genetic Predisposition to Disease , Genetic Testing/economics , Risk Assessment/economics , Venous Thromboembolism/economics , Venous Thromboembolism/genetics , Adult , Aged , Aged, 80 and over , Decision Trees , Female , Humans , Male , Middle Aged , Models, Economic , Predictive Value of Tests , Risk Assessment/methods , Sensitivity and Specificity , Spain , Venous Thromboembolism/etiology
5.
Genes Immun ; 16(2): 134-41, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25569262

ABSTRACT

HIV-1 induces activation of complement through the classical and lectin pathways. However, the virus incorporates several membrane-bound or soluble regulators of complement activation (RCA) that inactivate complement. HIV-1 can also use the complement receptors (CRs) for complement-mediated antibody-dependent enhancement of infection (C-ADE). We hypothesize that hypofunctional polymorphisms in RCA or CRs may protect from HIV-1 infection. For this purpose, 139 SNPs located in 19 RCA and CRs genes were genotyped in a population of 201 Spanish HIV-1-exposed seronegative individuals (HESN) and 250 HIV-1-infected patients. Two SNPs were associated with infection susceptibility, rs1567190 in CR2 (odds ratio (OR) = 2.27, P = 1 × 10(-4)) and rs2842704 in C4BPA (OR = 2.11, P = 2 × 10(-4)). To replicate this finding, we analyzed a cohort of Italian, sexually HESN individuals. Although not significant (P = 0.25, OR = 1.57), similar genotypic proportions were obtained for the CR2 marker rs1567190. The results of the two association analyses were combined through a random effect meta-analysis, with a significant P-value of 2.6 x 10(-5) (OR = 2.07). Furthermore, we found that the protective CR2 genotype is correlated with lower levels CR2 mRNA as well as differences in the ratio of the long and short CR2 isoforms.


Subject(s)
HIV Infections/genetics , HIV Infections/immunology , HIV-1/immunology , Receptors, Complement 3d/genetics , Receptors, Complement 3d/immunology , Cohort Studies , Disease Susceptibility/immunology , HIV Antibodies/genetics , Haplotypes , Humans , Immunity, Innate/genetics , Male , Polymorphism, Single Nucleotide
7.
J Thromb Haemost ; 11(3): 521-8, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23279374

ABSTRACT

BACKGROUND: ß2 -Glycoprotein I (ß2 -GPI), also designated apolipoprotein H, is a 50-kDa protein that circulates in blood at high concentrations, playing important roles in autoimmune diseases, hemostasis, atherogenesis, and angiogenesis, as well as in host defense against bacteria and in protein/cellular waste removal. Plasma ß2 -GPI levels have a significant genetic component (heritability of ~ 80%). OBJECTIVES: To present the results of a genome-wide association study for plasma ß2 -GPI levels in a set of extended pedigrees from the Genetic Analysis of Idiopathic Thrombophilia (GAIT) Project. PATIENTS/METHODS: A total of 306 individuals for whom ß2 -GPI plasma measurements were available were typed for 307,984 single-nucleotide polymorphisms (SNPs) with the Infinium 317k Beadchip (Illumina). Association with the ß2 -GPI phenotype was investigated through variance component analysis, and the most significant results were followed up for association with coronary artery disease (CAD) in an independent in silico analysis involving 5765 CAD cases from the PROCARDIS Project and 7264 controls from the PROCARDIS Project and the Wellcome Trust Case Control Consortium (WTCCC) collection. RESULTS: After correction for multiple testing, three SNPs located in/around two genes (ELF5 and SCUBE2) reached genome-wide significance. Moreover, an SNP in the APOH gene showed suggestive association with the ß2 -GPI phenotype. Some of the identified genes are plausible biological candidates, as they are actually or potentially involved in inflammatory processes. CONCLUSIONS: Our results represent a first step towards identifying common variants reflecting the genetic architecture influencing plasma ß2 -GPI levels, and warrant further validation by functional experiments, as the functions of some of the discovered loci are still unknown.


Subject(s)
Coronary Artery Disease/blood , Coronary Artery Disease/genetics , Polymorphism, Single Nucleotide , beta 2-Glycoprotein I/blood , beta 2-Glycoprotein I/genetics , Adaptor Proteins, Signal Transducing , Adolescent , Adult , Aged , Aged, 80 and over , Autoimmune Diseases/blood , Autoimmune Diseases/genetics , Calcium-Binding Proteins , Case-Control Studies , Child , Child, Preschool , DNA-Binding Proteins , Female , Genetic Predisposition to Disease , Genome-Wide Association Study , Humans , Infant , Linear Models , Logistic Models , Male , Membrane Proteins/genetics , Middle Aged , Pedigree , Phenotype , Proto-Oncogene Proteins c-ets/genetics , Spain , Thrombophilia/blood , Thrombophilia/genetics , Transcription Factors , Young Adult
8.
Neuroscience ; 224: 102-15, 2012 Nov 08.
Article in English | MEDLINE | ID: mdl-22917609

ABSTRACT

After trauma brain injury, a large number of cells die, releasing neurotoxic chemicals into the extracellular medium, decreasing cellular glutathione levels and increasing reactive oxygen species that affect cell survival and provoke an enlargement of the initial lesion. Alpha-lipoic acid is a potent antioxidant commonly used as a treatment of many degenerative diseases such as multiple sclerosis or diabetic neuropathy. Herein, the antioxidant effects of lipoic acid treatment after brain cryo-injury in rat have been studied, as well as cell survival, proliferation in the injured area, gliogenesis and angiogenesis. Thus, it is shown that newborn cells, mostly corresponded with blood vessels and glial cells, colonized the damaged area 15 days after the lesion. However, lipoic acid was able to stimulate the synthesis of glutathione, decrease cell death, promote angiogenesis and decrease the glial scar formation. All those facts allow the formation of new neural tissue. In view of the results herein, lipoic acid might be a plausible pharmacological treatment after brain injury, acting as a neuroprotective agent of the neural tissue, promoting angiogenesis and reducing the glial scar formation. These findings open new possibilities for restorative strategies after brain injury, stroke or related disorders.


Subject(s)
Brain Injuries/pathology , Neovascularization, Physiologic/drug effects , Neuroglia/drug effects , Neuroprotective Agents/pharmacology , Thioctic Acid/pharmacology , Animals , Antioxidants/pharmacology , Blotting, Western , Chromatography, High Pressure Liquid , Cicatrix/pathology , Immunohistochemistry , In Situ Nick-End Labeling , Male , Microscopy, Electron, Transmission , Neuroglia/ultrastructure , Rats , Rats, Wistar
9.
Angiología ; 62(2): 58-64, mar.-abr. 2010.
Article in Spanish | IBECS | ID: ibc-81978

ABSTRACT

Las enfermedades vasculares, particularmente el aneurisma de la aorta abdominal (AAA), tienen una base multifactorial compleja, donde múltiples interacciones entre factores genéticos y ambientales contribuyen al desarrollo de la enfermedad. Sin embargo, pese a los avances en la última década, nuestros conocimientos sobre la base genética de estas patologías son aún escasos. Este artículo presenta una revisión de los métodos para el estudio de las bases genéticas de las enfermedades vasculares focalizada en el AAA desde un enfoque de enfermedad compleja, y de índole multifactorial. La identificación y el análisis de los genes causantes de esta patología nos permitirán realizar una estratificación de los individuos con diferentes riesgos de desarrollar esta patología, mejorando las opciones preventivas y terapéuticas, lo que se traducirá en una mayor calidad de vida de las personas en riesgo(AU)


The aetiology of vascular diseases, such as abdominal aortic aneurysm (AAA), is complex and multi-factorial. The complexity derives from different genetic and environmental factors contributing to the development of these diseases. Despite the fact that a great effort has been made in the last decade to understand the genetic basis of these complex diseases there is still much to be learned. The present review deals with the methods that have been used to study the genetic bases of vascular diseases. In addition, we will focus on AAA as a complex multi-factorial disease. The identification of the genes involved in the pathophysiology of AAA will allow us to stratify individuals with different risks of developing disease, as well as improving preventive and therapeutic strategies. All of this will increase the quality of life of the persons who are in risk(AU)


Subject(s)
Humans , Aortic Aneurysm, Abdominal/genetics , Genetic Predisposition to Disease , Risk Factors , Aortic Aneurysm, Abdominal/epidemiology , Polymorphism, Genetic
10.
J Biomed Mater Res A ; 94(3): 856-69, 2010 Sep 01.
Article in English | MEDLINE | ID: mdl-20336752

ABSTRACT

Poly(L-lactic acid), PLLA, a synthetic biodegradable polyester, is widely accepted in tissue engineering. Hyaluronic acid (HA), a natural polymer, exhibits an excellent biocompatibility, influences cell signaling, proliferation, and differentiation. In this study, HA crosslinking was performed by immersion of the polysaccharide in water-acetone mixtures containing glutaraldehyde (GA). The objective of this work is to produce PLLA scaffolds with the pores coated with HA, that could be beneficial for bone tissue engineering applications. PLLA tridimensional scaffolds were prepared by compression molding followed by salt leaching. After the scaffolds impregnation with soluble HA solutions of distinct concentration, a GA-crosslinking reaction followed by inactivation of the unreacted GA with glycine was carried out. An increase on surface roughness is shown by scanning electron microscopy (SEM) with the addition of HA. Toluidine blue staining indicates the present of stable crosslinked HA. An estimation of the HA original weight in the hybrid scaffolds was performed using thermal gravimetric analyses. FTIR-ATR and XPS confirmed the crosslinking reaction. Preliminary in vitro cell culture studies were carried out using a mouse lung fibroblast cell line (L929). SEM micrographs of L929 showed that cells adhered well, spread actively throughout all scaffolds, and grew favorably. A MTS test indicated that cells were viable when cultured onto the surface of all scaffolds, suggesting that the introduction of crosslinked HA did not increase the cytotoxicity of the hybrid scaffolds.


Subject(s)
Hyaluronic Acid/chemistry , Lactic Acid/chemistry , Polymers/chemistry , Tissue Scaffolds/chemistry , Animals , Biocompatible Materials/chemistry , Cell Adhesion , Cell Line , Compressive Strength , Cross-Linking Reagents/chemistry , Materials Testing , Mice , Photoelectron Spectroscopy , Polyesters , Porosity , Spectroscopy, Fourier Transform Infrared , Surface Properties , Thermogravimetry , Tissue Engineering/methods
11.
Trauma (Majadahonda) ; 20(2): 69-74, abr.-jun. 2009. ilus
Article in Spanish | IBECS | ID: ibc-84088

ABSTRACT

Objetivos: Evaluar el rendimiento de los biomateriales poliméricos basados en ácido hialurónico y su utilidad en el Sistema Nervioso Central, sirviendo como soporte, para la supervivencia y diferenciación celular. Material y Metodos: Con el fin de evaluar la viabilidad de los soportes poliméricos y acanalados, se realizaron experimetos in vitro e in vivo mediante el implante en corteza cerebral de ratas Wistar. Mediante técnicas inmunocitoquímicas e histológicas se procedió al análisis de la viabilidad de los soportes. Resultados: Tras el cultivo pudimos constatar la viabilidad celular sobre los biomateriales, asi como su potencial utilidad para la regeneración in vivo de estructuras vasculares y neurales. Conclusiones: La posibilidad de regenerar estructuras vasculares y neurales a través del implante de biomateriales basados en ácido hialurónico, constituye un avance en la utilización de biomateriales en el Sistema Nervioso Central (AU)


Objetives: To evaluate the performance of polymeric biomaterials based on hyaluronic acid and their usefulness in the central nervous system as support for cell differentiation and survival. Material and methods: With the purpose of assessing the viability of polymeric cannulated scaffolds, in vitro and in vivo experiments were made involving implantation in the Wistar rate brain cortex. Immunocytochemical and histological techniques were used to analyze scaffold viability. Results: Following culture, cell viability on the biomaterials was confirmed, together with the potential usefulness of the latter for the in vivo regeneration of vascular and neural structures. Conclusions: The possibility of regenerating vascular and neural structures through the implantation of biomaterials based on hyaluronic acid constitutes an advance in the use of biomaterials in the central nervous system (AU)


Subject(s)
Animals , Male , Female , Rats , Biocompatible Materials/therapeutic use , Rats, Wistar/classification , Head Injuries, Penetrating/therapy , Cell Membrane Structures/metabolism , Stem Cells/physiology , Nervous System Physiological Phenomena , Histocytochemistry/methods , Biocompatible Materials/administration & dosage , Biocompatible Materials/metabolism , Head Injuries, Penetrating/rehabilitation , Rats, Wistar/metabolism , Hyaluronic Acid/metabolism , Hyaluronic Acid/therapeutic use , Materials Testing/methods , Microsurgery/methods , Histocytochemistry/veterinary , Histocytochemistry/instrumentation
12.
J Biomed Mater Res B Appl Biomater ; 91(1): 277-86, 2009 Oct.
Article in English | MEDLINE | ID: mdl-19441119

ABSTRACT

We have synthesized methacrylate-endcapped caprolactone networks with tailored water sorption ability, poly(CLMA-co-HEA), in the form of three-dimensional (3D) scaffolds with the same architecture but exhibiting different hydrophilicity character (x(HEA)=0, 0.3, 0.5), and we investigated the interaction of goat bone marrow stromal cells (GBMSCs) with such structures. For this purpose, GBMSCs were seeded and cultured for 3, 7, 14, 21, and 28 days onto the developed scaffolds. Cells have proliferated throughout the whole scaffold volume. Cell adhesion and morphology were analyzed by SEM, whereas cell viability and proliferation was assessed by MTS test and DNA quantification concluding that numbers of cells increased as a function of the culturing time (until day 14) and also with the hydrophobic content in the samples (from 50 to 100% of CLMA). No significant difference between samples with 100% and 70% of CLMA were detected in some cases. Osteoblastic differentiation was followed by assessing the alkaline phosphatase activity of cells, as well as type I collagen and osteocalcin expressions levels until day 21. The three markers were positive at days 14 and 21 when cells were cultured in 100% CLMA substrates which suggests osteoblastic differentiation of mesenchymal stem cells within these scaffolds. On the other hand, when the CLMA content decreases (until 50%), type I collagen and osteocalcin were positive but ALP was negative indicating that the differentiation process is affected by hydrophilic content. We suggest that such system may be useful to extract information on the effect of materials' wettability on the corresponding biological performance in a 3D environment. Such general insights may be relevant in the context of biomaterials selection for tissue engineering strategies.


Subject(s)
Bone Marrow Cells/physiology , Cell Differentiation/physiology , Cell Proliferation , Goats , Stromal Cells/physiology , Tissue Scaffolds , Animals , Biocompatible Materials/chemistry , Biomarkers/metabolism , Bone Marrow Cells/cytology , Caproates/chemistry , Cell Adhesion/physiology , Cell Culture Techniques , Cells, Cultured , Lactones/chemistry , Materials Testing , Methacrylates/chemistry , Osteoblasts/cytology , Osteoblasts/physiology , Polymers/chemistry , Porosity , Stromal Cells/cytology , Surface Properties , Wettability , X-Ray Microtomography
13.
Trauma (Majadahonda) ; 20(1): 15-22, ene.-mar. 2009. tab
Article in Spanish | IBECS | ID: ibc-83910

ABSTRACT

Objetivo: Analizar algunos de los aspectos físico-químicos y estructurales más importantes en el diseño de biomateriales destinados a la reparación tisular con un enfoque hacia su posible utilidad y potencialidad en el sistema nervioso. Diseño: Se analizan diversos estudios enfocados a la síntesis y diseño de biomateriales destinados a la reconstrucción tisular a partir de matrices porosas, sistemas nanoestructurados y combinación de biomateriales y células madre con fines regenerativos. Conclusiones: La práctica en el empleo de biomateriales con fines regenerativos constituye hoy día un hecho evidente y un gran desafío para la medicina neuroregenerativa (AU)


Objective: To analyze some of the physical-chemical and structural most important aspect in the design of biomaterials for tissue repair with an approach to its possible usefulness in the nervous system. Design: We analyzed several studies regarding the synthesis and design of biomaterials for tissue reconstruction by using porous scaffolds, nanostructured systems, and combination of biomaterials and stem cells. Conclusions: Nowadays the use of biomaterials for regenerative processes is an evident fact, and a great challenge for neuroregenerative medicine (AU)


Subject(s)
Humans , Male , Female , Biocompatible Materials/therapeutic use , Trauma, Nervous System/surgery , Trauma, Nervous System , Neurosurgical Procedures/methods , Regenerative Medicine/methods , Regenerative Medicine/trends , Nervous System/pathology , Neurosurgical Procedures/rehabilitation , Peripheral Nerves/anatomy & histology , Peripheral Nerves/cytology
14.
IEEE Trans Nanobioscience ; 7(2): 133-41, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18556261

ABSTRACT

In this work, parametric information-theory measures for the characterization of binding sites in DNA are extended with the use of transitional probabilities on the sequence. We propose the use of parametric uncertainty measures such as Rényi entropies obtained from the transition probabilities for the study of the binding sites, in addition to nucleotide frequency-based Rényi measures. Results are reported in this work comparing transition frequencies (i.e., dinucleotides) and base frequencies for Shannon and parametric Rényi entropies for a number of binding sites found in E. Coli, lambda and T7 organisms. We observe that the information provided by both approaches is not redundant. Furthermore, under the presence of noise in the binding site matrix we observe overall improved robustness of nucleotide transition-based algorithms when compared with nucleotide frequency-based method.


Subject(s)
DNA/chemistry , DNA/ultrastructure , Models, Chemical , Models, Molecular , Nucleotides/chemistry , Binding Sites , Computer Simulation , Entropy
15.
Article in English | MEDLINE | ID: mdl-19163535

ABSTRACT

One of the main goals of human genetics is to find genetic markers related to complex diseases. In blood coagulation process, it is known that genetic variability in F7 gene is the most responsible for observed variations in FVII levels in blood. In this work, we propose a method for selecting sets of Single Nucleotide Polymorphisms (SNPs) significantly correlated with a phenotype (FVII levels). This method employs a feature selection algorithm (variant of Sequential Forward Selection, SFS) based on a criterion of statistical significance of a mutual information functional. This algorithm is applied to a sample of independent individuals from the GAIT project. Main SNPs found by the algorithm are in correspondence with previous results published using family-based techniques.


Subject(s)
Factor VII/genetics , Genomics/methods , Polymorphism, Single Nucleotide/genetics , Algorithms , Artificial Intelligence , Cluster Analysis , Databases, Genetic , Humans , Models, Genetic , Models, Statistical , Models, Theoretical , Phenotype
16.
J Biomed Mater Res A ; 83(2): 463-70, 2007 Nov.
Article in English | MEDLINE | ID: mdl-17477391

ABSTRACT

A series of polymeric biomaterials including poly (methyl acrylate) (PMA), chitosan (CHT), poly(ethyl acrylate) (PEA), poly(hydroxyethyl acrylate) (PHEA), and a series of random copolymers containing ethyl acrylate and hydroxyethyl acrylate monomeric units were tested in vitro as culture substrates and compared for their impact on the proliferation and expansion of Schwann cells (SCs). Immunocytochemical staining assay and scanning electron microscopy techniques were applied to perform a quantitative analysis to determine the correct maintenance of the cultured glial cells on the different biomaterials. The results strongly suggest that cell attachment and proliferation is influenced by the substrate's surface chemistry, and that hydrophobic biomaterials based on PMA, PEA, and the copolymers PEA and PHEA in a narrow composition window are suitable substrates to promote cell attachment and proliferation of SCs in vitro.


Subject(s)
Schwann Cells/cytology , Animals , Cell Adhesion , Cell Differentiation , Cell Proliferation , Cell Survival , Cells, Cultured , Rats , Rats, Wistar , Schwann Cells/ultrastructure , Substrate Specificity , Surface Tension , Water/metabolism
17.
J Thromb Haemost ; 4(7): 1537-45, 2006 Jul.
Article in English | MEDLINE | ID: mdl-16839351

ABSTRACT

BACKGROUND: High-normal and elevated plasma FIX activity (FIX:C) levels are associated with increased risk for venous- and possibly arterial-thrombosis. OBJECTIVE: Because the broad normal range for FIX:C involves a substantial unknown genetic component, we sought to identify quantitative-trait loci (QTLs) for this medically important hemostasis trait. METHODS: We performed a genome-wide screen and a resequencing-based variation scan of the known functional regions of every distinct FIX gene (F9) in the genetic analysis of idiopathic thrombophilia project (GAIT), a collection of 398 Spanish-Caucasians from 21 pedigrees. RESULTS: We found no evidence for linkage (LOD scores <1.5) despite genotyping more than 540 uniformly-spaced microsatellites. We identified 27 candidate F9 polymorphisms, including three in cis-elements responsible for the increase in FIX:C that occurs with aging, but found no significant genotype-specific differences in mean FIX:C levels (P-values > or = 0.11) despite evaluating every polymorphism in GAIT by marginal multicovariate measured-genotype association analysis. CONCLUSIONS: The heritable component of interindividual FIX:C variability likely involves a collection of QTLs with modest effects that may reside in genes other than F9. Nevertheless, because the alleles of these 27 polymorphisms exhibited a low overall degree of linkage disequilibrium, we are currently defining their haplotypes to interrogate several highly-conserved non-exonic sequences and other F9 segments not examined here.


Subject(s)
Factor IX/genetics , Polymorphism, Genetic , Adolescent , Adult , Aged , Aged, 80 and over , Child , Child, Preschool , Factor IX/analysis , Female , Genetic Linkage , Genomics/methods , Genotype , Humans , Infant , Male , Middle Aged , Pedigree , Quantitative Trait Loci , Thrombophilia/genetics
18.
Clin Genet ; 69(5): 420-8, 2006 May.
Article in English | MEDLINE | ID: mdl-16650081

ABSTRACT

Delineating the genetic variability of loci coding for complex diseases helps to understand the individual variation in disease susceptibility and drug response. We present the allelic architecture of the F7 gene. This gene is the major determinant of FVII plasma levels, and these plasma levels constitute an important intermediate risk factor for cardiovascular disease. As part of the Genetic Analysis of Idiopathic Thrombophila Project, we completely re-sequenced the F7 locus (promoter, exons, introns, and 3'-untranslated region) in 40 unrelated individuals. We found 49 polymorphisms with only two amino acid changes suggesting that regulatory non-coding and intronic variants are responsible for the FVII variability. These results are important for mapping susceptibility alleles of complex diseases, because differences in pair-wise linkage disequilibrium patterns between DNA variants and haplotype frequency distributions may help to detect disease-associated alleles. In addition, we present the results of an in silico search that established genomic comparisons among different species. In conclusion, our study of the F7 DNA sequence variations is an example of a strategy for analyzing the genetic architecture of a quantitative trait locus. Furthermore, it provides a model for future analyses of genetic factors that contribute to the susceptibility of complex diseases in humans.


Subject(s)
Cardiovascular Diseases/genetics , Factor VII/genetics , Genetic Predisposition to Disease , Alleles , Amino Acid Sequence , Chromosome Mapping , Computational Biology , DNA Mutational Analysis , Genomics , Haplotypes , Humans , Linkage Disequilibrium , Molecular Sequence Data , Polymorphism, Single Nucleotide , Sequence Alignment , Spain , Thrombophilia/genetics
19.
Hum Biol ; 78(3): 329-39, 2006 Jun.
Article in English | MEDLINE | ID: mdl-17216805

ABSTRACT

When activated, thrombin activatable fibrinolysis inhibitor (TAFI) inhibits fibrinolysis by modifying fibrin, depressing its plasminogen binding potential. Polymorphisms in the TAFI structural gene (CPB2) have been associated with variation in TAFI levels, but the potential occurrence of influential quantitative trait loci (QTLs) located elsewhere in the genome has been explored only in families ascertained in part through probands affected by thrombosis. We report the results of the first genome-wide linkage screen for QTLs that influence TAFI phenotypes. Data are from 635 subjects from 21 randomly ascertained Mexican American families participating in the San Antonio Family Heart Study. Potential QTLs were localized through a genome-wide multipoint linkage scan using 417 highly informative autosomal short tandem repeat markers spaced at approximately 10-cM intervals. We observed a maximum multipoint LOD score of 3.09 on chromosome 13q, the region of the TAFI structural gene. A suggestive linkage signal (LOD = 2.04) also was observed in this region, but may be an artifact. In addition, weak evidence for linkage occurred on chromosomes 17p and 9q. Our results suggest that polymorphisms in the TAFI structural gene or its nearby regulatory elements may contribute strongly to TAFI level variation in the general population, although several genes in other regions of the genome may also influence variation in this phenotype. Our findings support those of the Genetic Analysis of Idiopathic Thrombophilia (GAIT) project, which identified a potential TAFI QTL on chromosome 13q in a genome-wide linkage scan in Spanish thrombophilia families.


Subject(s)
Carboxypeptidase B2/genetics , Chromosomes, Human, Pair 13/genetics , Mexican Americans/genetics , Quantitative Trait Loci/genetics , Adult , Aged , Aged, 80 and over , Carboxypeptidase B2/blood , Carboxypeptidase B2/physiology , Female , Genetic Linkage , Genotype , Humans , Male , Middle Aged
20.
Cereb Cortex ; 15(12): 2021-8, 2005 Dec.
Article in English | MEDLINE | ID: mdl-15800025

ABSTRACT

The correct size of the different areas composing the mature cerebral cortex depends on the proper early allocation of cortical progenitors to their distinctive areal fates, as well as on appropriate subsequent tuning of their area-specific proliferation-differentiation profiles. Whereas much is known about the genetics of the former process, the molecular mechanisms regulating proliferation and differentiation rates within distinctive cortical proto-areas are still largely obscure. Here we show that a mutual stimulating loop, involving Emx2 and canonical Wnt signalling, specifically promotes expansion of the occipito-hippocampal anlage. Collapse of this loop occurring in Emx2-/- mutants leads progenitors within this region to slow down DNA synthesis and exit prematurely from the cell cycle, due to misregulation of cell cycle-, proneural- and lateral inhibition-molecular machineries, and eventually results in dramatic and selective size-reduction of occipital cortex and hippocampus. Reactivation of canonical Wnt signalling in the same mutants rescues a subset of molecular abnormalities and corrects differentiation rates of occipito-hippocampal progenitors.


Subject(s)
Hippocampus/embryology , Homeodomain Proteins/genetics , Homeodomain Proteins/metabolism , Occipital Lobe/embryology , Wnt Proteins/metabolism , Animals , Cell Differentiation/physiology , Cell Division/physiology , Gene Expression Regulation, Developmental , Hippocampus/cytology , Hippocampus/metabolism , Mice , Mice, Mutant Strains , Neurons/cytology , Occipital Lobe/cytology , Occipital Lobe/metabolism , Signal Transduction/physiology , Stem Cells/cytology , Transcription Factors
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