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1.
Genome Res ; 27(8): 1323-1335, 2017 08.
Article in English | MEDLINE | ID: mdl-28630177

ABSTRACT

While next-generation sequencing has accelerated the discovery of human disease genes, progress has been largely limited to the "low hanging fruit" of mutations with obvious exonic coding or canonical splice site impact. In contrast, the lack of high-throughput, unbiased approaches for functional assessment of most noncoding variants has bottlenecked gene discovery. We report the integration of transcriptome sequencing (RNA-seq), which surveys all mRNAs to reveal functional impacts of variants at the transcription level, into the gene discovery framework for a unique human disease, microcephaly-micromelia syndrome (MMS). MMS is an autosomal recessive condition described thus far in only a single First Nations population and causes intrauterine growth restriction, severe microcephaly, craniofacial anomalies, skeletal dysplasia, and neonatal lethality. Linkage analysis of affected families, including a very large pedigree, identified a single locus on Chromosome 21 linked to the disease (LOD > 9). Comprehensive genome sequencing did not reveal any pathogenic coding or canonical splicing mutations within the linkage region but identified several nonconserved noncoding variants. RNA-seq analysis detected aberrant splicing in DONSON due to one of these noncoding variants, showing a causative role for DONSON disruption in MMS. We show that DONSON is expressed in progenitor cells of embryonic human brain and other proliferating tissues, is co-expressed with components of the DNA replication machinery, and that Donson is essential for early embryonic development in mice as well, suggesting an essential conserved role for DONSON in the cell cycle. Our results demonstrate the utility of integrating transcriptomics into the study of human genetic disease when DNA sequencing alone is not sufficient to reveal the underlying pathogenic mutation.


Subject(s)
Cell Cycle Proteins/genetics , DNA Replication , Microcephaly/genetics , Microcephaly/pathology , Mutation , Nuclear Proteins/genetics , Osteochondrodysplasias/genetics , Osteochondrodysplasias/pathology , Transcriptome , Animals , Chromosome Mapping , Female , Genetic Linkage , Genomic Instability , High-Throughput Nucleotide Sequencing , Humans , Male , Mice , Mice, Knockout , Microcephaly/etiology , Osteochondrodysplasias/etiology , Pedigree , Pregnancy , RNA Splicing , Sequence Analysis, RNA , Whole Genome Sequencing
2.
Consult Pharm ; 28(3): 168-75, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23462026

ABSTRACT

OBJECTIVES: The objective of this study was to evaluate a pharmacy student-led interactive educational program for older adults on the safe use of over-the-counter (OTC) medications. METHODS: This was a prospective, interventional study evaluating an educational program covering 12 common OTC topics. Doctor of pharmacy students and a geriatric specialist faculty advisor developed and delivered a 30-minute presentation tailored to older adults, accompanied by various interactive learning methods, including a question and answer session. Following the program, participants completed a questionnaire to address the helpfulness and report intentions of behavior change. RESULTS: A total of 88 individuals attended the presentations, and 64 participants voluntarily completed the anonymous post-program survey; 91.8% of the participants indicated the intervention was either "very helpful" or "moderately helpful." The majority of subjects stated they would make changes to the way they use OTCs (79.3%) and discuss OTC use with their providers (88.3%). The three most beneficial topics included vitamins/minerals, reading a drug label, and sleep medications. CONCLUSION: An interactive educational program on the safe use of OTC medications was helpful and generated positive intentions regarding behavior change in OTC use among older adults.


Subject(s)
Health Knowledge, Attitudes, Practice , Nonprescription Drugs/adverse effects , Patient Education as Topic , Students, Pharmacy , Age Factors , Aged, 80 and over , Arizona , Female , Humans , Male , Patient Safety , Program Evaluation , Prospective Studies , Risk Assessment , Risk Factors , Surveys and Questionnaires
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