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1.
Nat Commun ; 14(1): 8078, 2023 Dec 06.
Article in English | MEDLINE | ID: mdl-38057313

ABSTRACT

Omicron BA.2.86 subvariant differs from Omicron BA.2 as well as recently circulating variants by over 30 mutations in the spike protein alone. Here we report on the isolation of the live BA.2.86 subvariant from a diagnostic swab collected in South Africa which we tested for escape from neutralizing antibodies and viral replication properties in cell culture. We found that BA.2.86 does not have significantly more escape relative to Omicron XBB.1.5 from neutralizing immunity elicited by either Omicron XBB-family subvariant infection or from residual neutralizing immunity of recently collected sera from the South African population. BA.2.86 does have extensive escape relative to ancestral virus with the D614G substitution (B.1 lineage) when neutralized by sera from pre-Omicron vaccinated individuals and relative to Omicron BA.1 when neutralized by sera from Omicron BA.1 infected individuals. BA.2.86 and XBB.1.5 show similar viral infection dynamics in the VeroE6-TMPRSS2 and H1299-ACE2 cell lines. We also investigate the relationship of BA.2.86 to BA.2 sequences. The closest BA.2 sequences are BA.2 samples from Southern Africa circulating in early 2022. Similarly, many basal BA.2.86 sequences were sampled in Southern Africa. This suggests that BA.2.86 potentially evolved in this region, and that unobserved evolution led to escape from neutralizing antibodies similar in scale to recently circulating strains of SARS-CoV-2.


Subject(s)
COVID-19 , SARS-CoV-2 , Humans , Africa, Southern , Antibodies, Neutralizing , Antibodies, Viral , COVID-19/virology , SARS-CoV-2/genetics
2.
Clin Exp Hypertens ; 35(8): 614-9, 2013.
Article in English | MEDLINE | ID: mdl-23489065

ABSTRACT

The C-824T single nucleotide polymorphism in the promoter region of the tyrosine hydroxylase gene has been associated with hypertension. It is well documented that African South Africans exhibit a higher prevalence of hypertension than Caucasians. However, the possible role of this mutation on 24-hour ambulatory blood pressure (AMBP) has not been investigated in African South Africans. Blood samples of 409 South Africans were screened for the mutation. Ambulatory blood pressure and lifestyle factors were also measured. Africans had higher incidence of hypertension and higher occurrence of the mutation. However, the contribution of the tyrosine hydroxylase C-824T single nucleotide polymorphism to hypertension could not be confirmed in our cohort.


Subject(s)
Black People/genetics , Blood Pressure/genetics , Hypertension/genetics , Tyrosine 3-Monooxygenase/genetics , White People/genetics , Adult , Black People/statistics & numerical data , Blood Pressure Monitoring, Ambulatory , Cohort Studies , Female , Humans , Hypertension/ethnology , Male , Middle Aged , Polymorphism, Single Nucleotide , Promoter Regions, Genetic/genetics , South Africa/epidemiology , White People/statistics & numerical data
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