Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 1.433
Filter
1.
Plant J ; 2024 Oct 09.
Article in English | MEDLINE | ID: mdl-39383323

ABSTRACT

Plant leaves play a pivotal role in automated species identification using deep learning (DL). However, achieving reproducible capture of leaf variation remains challenging due to the inherent "black box" problem of DL models. To evaluate the effectiveness of DL in capturing leaf shape, we used geometric morphometrics (GM), an emerging component of eXplainable Artificial Intelligence (XAI) toolkits. We photographed Ranunculus auricomus leaves directly in situ and after herbarization. From these corresponding leaf images, we automatically extracted DL features using a neural network and digitized leaf shapes using GM. The association between the extracted DL features and GM shapes was then evaluated using dimension reduction and covariation models. DL features facilitated the clustering of leaf images by source populations in both in situ and herbarized leaf image datasets, and certain DL features were significantly associated with biological leaf shape variation as inferred by GM. DL features also enabled leaf classification into morpho-phylogenomic groups within the intricate R. auricomus species complex. We demonstrated that simple in situ leaf imaging and DL reproducibly captured leaf shape variation at the population level, while combining this approach with GM provided key insights into the shape information extracted from images by computer vision, a necessary prerequisite for reliable automated plant phenotyping.

2.
J Morphol ; 285(10): e21780, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39385398

ABSTRACT

The mammalian order Primates is known for widespread sexual dimorphism in size and phenotype. Despite repeated speculation that primate sexual size dimorphism either facilitates or is in part driven by functional differences in how males and females interact with their environments, few studies have directly assessed the influence of sexual dimorphism on performance traits. Here, we use a theoretical morphology framework to show that sexual dimorphism in primate crania is associated with divergent biomechanical performance traits. The degree of dimorphism is a significant covariate in biomechanical trait divergence between sexes. Males exhibit less efficient but stiffer cranial shapes and significant evolutionary allometry in biomechanical performance, whereas females maintain performance stability across their size spectrum. Evolutionary rates are elevated for efficiency in females whereas males emphasize size-dependent cranial stiffness. These findings support a hypothesis of sex-linked bifurcation in masticatory system performance: larger male crania and faster size evolution partially compensate for low efficiency and reflect a de-emphasis of mechanical leverage, whereas female crania maintain higher mechanical efficiency overall and evolve more rapidly in molar-based masticatory performance. The evolutionary checks-and-balances between size dimorphism and cranial mechanical performance may be a more important driver of primate phenotypic evolution than has been hitherto appreciated.


Subject(s)
Biological Evolution , Primates , Sex Characteristics , Skull , Animals , Female , Skull/anatomy & histology , Skull/physiology , Male , Biomechanical Phenomena , Primates/anatomy & histology , Primates/physiology
3.
Evolution ; 2024 Oct 05.
Article in English | MEDLINE | ID: mdl-39367612

ABSTRACT

Trait diversification is often driven by underlying performance tradeoffs in the context of different selective pressures. Evolutionary changes in task specialization may influence how species respond to tradeoffs and alter diversification. We conducted this study to investigate the functional morphology, evolutionary history, and tempo and mode of evolution of the Hymenoptera stinger using Ectatomminae ants as a model clade. We hypothesized that a performance tradeoff surface underlies the diversity of stinger morphology and that shifts between predatory and omnivorous diets mediate the diversification dynamics of the trait. Shape variation was characterized by X-ray microtomography, and the correlation between shape and average values of von Mises stress, as a measure of yield failure criteria under loading conditions typical of puncture scenarios, was determined using finite element analysis. We observed that stinger elongation underlies most of the shape variation but found no evidence of biomechanical tradeoffs in the performance characteristics measured. Additionally, omnivores have increased phenotypic shifts and accelerated evolution in performance metrics, suggesting the evolution of dietary flexibility releases selection pressure on a specific function, resulting in a greater phenotypic evolutionary rate. These results increase our understanding of the biomechanical basis of stinger shape, indicate that shape diversity is not the outcome of simple biomechanical optimization, and reveal connections between diet and trait diversification.

4.
Eur J Orthod ; 46(6)2024 Dec 01.
Article in English | MEDLINE | ID: mdl-39364771

ABSTRACT

BACKGROUND/OBJECTIVES: It is unclear whether palatal canine impaction is related to genetic or local/environmental factors. If a genetic origin is assumed, then it could be expected that palatal canine impaction is associated with overall craniofacial development. Within this context, the aim of this study was to evaluate the craniofacial morphology of individuals with palatal canine impaction and compare it to a matched group of normal controls. MATERIALS/METHODS: The sample for this investigation comprised 404 individuals (232 females and 172 males). Half of these individuals presented with unilateral or bilateral palatal canine impaction confirmed clinically and radiographically. The other half were matched for sex and age with the first half and comprised individuals without tooth impaction, apart from third molars. The shape of the craniofacial structures was outlined on calibrated cephalometric images through 15 curves and 127 landmarks (11 fixed and 116 semi-landmarks). Shape configurations were superimposed using Procrustes Superimposition and the resulting shape coordinates were reduced into principal components for all subsequent analyses. The effect of palatal canine impaction on craniofacial shape was assessed with regression models, separately in females and males. All statistical tests were performed assuming a type-1 error of 5%. RESULTS: Individuals with palatally impacted canines appear to have a less convex face, a more brachyfacial skeletal pattern, and a sagittally extended premaxilla. In females effect sizes ranged between η2 = 0.136-0.397 (P < 0.05) and in males between η2 = 0.125-0.396 (P < 0.05, apart from the entire craniofacial configuration: P = 0.259). LIMITATIONS: Palatal canine impaction was not confirmed through cone beam computer tomography images in all patients, however, in those cases, the treatment history confirmed the diagnosis. CONCLUSIONS/IMPLICATIONS: Palatal canine impaction is related to a distinct craniofacial shape in females and males. These findings allow for speculation that palatal canine impaction is affected by genetic pathways involved in overall craniofacial development.


Subject(s)
Cephalometry , Cuspid , Tooth, Impacted , Humans , Male , Female , Cuspid/diagnostic imaging , Tooth, Impacted/diagnostic imaging , Tooth, Impacted/pathology , Cephalometry/methods , Adolescent , Young Adult , Adult , Child , Case-Control Studies , Anatomic Landmarks , Maxilla/diagnostic imaging , Skull/diagnostic imaging , Skull/anatomy & histology , Skull/pathology
5.
Am Nat ; 204(4): 345-360, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39326057

ABSTRACT

AbstractInvasions of freshwater habitats by marine fishes provide exceptional cases of habitat-driven biological diversification. Freshwater habitats make up less than 1% of aquatic habitats but contain ∼50% of fish species. However, while the dominant group of freshwater fishes (Otophysi) is older than that of most marine fishes (Percomorphaceae), it is less morphologically diverse. Classically, scientists have invoked differences in the tempo and/or mode of evolution to explain such cases of unequal morphological diversification. We tested for evidence of these phenomena in the superfamily Cottoidea (sculpins), which contains substantial radiations of marine and freshwater fishes. We find that the morphology of freshwater sculpins evolves faster but under higher constraint than that of marine sculpins, causing widespread convergence in freshwater sculpins and more morphological disparity in marine sculpins. The endemic freshwater sculpins of Lake Baikal, Siberia, are exceptions that demonstrate elevated novelty akin to that of marine sculpins. Several tantalizing factors may explain these findings, such as differences in habitat stability and/or habitat connectivity between marine and freshwater systems.


Subject(s)
Biological Evolution , Ecosystem , Fresh Water , Perciformes , Animals , Perciformes/anatomy & histology , Perciformes/genetics , Phenotype , Siberia , Phylogeny
6.
Psychiatry Res ; 342: 116213, 2024 Sep 21.
Article in English | MEDLINE | ID: mdl-39326274

ABSTRACT

Development of the craniofacies occurs in embryological intimacy with development of the brain and both show normal left-right asymmetries. While facial dysmorphology occurs to excess in psychotic illness, facial asymmetry has yet to be investigated as a putative index of brain asymmetry. Ninety-three subjects (49 controls, 22 schizophrenia, 22 bipolar disorder) received 3D laser surface imaging of the face. On geometric morphometric analysis with (x, y, z) visualisations of statistical models for facial asymmetries, in controls the upper face and periorbital region, which share embryological intimacy with the forebrain, showed marked asymmetries. Their geometry included: along the x-axis, rightward asymmetry in its dorsal-medial aspects and leftward asymmetry in its ventral-lateral aspects; along the z-axis, anterior protrusion in its right ventral-lateral aspect. In both schizophrenia and bipolar disorder these normal facial asymmetries were diminished, with residual retention of asymmetries in bipolar disorder. This geometry of normal facial asymmetries shows commonalities with that of normal frontal lobe asymmetries. These findings indicate a trans-diagnostic process that involves loss of facial asymmetries in both schizophrenia and bipolar disorder. Embryologically, they implicate loss of face-brain asymmetries across gestational weeks 7-14 in processes that involve genes previously associated with risk for schizophrenia.

7.
Acta Trop ; 259: 107380, 2024 Nov.
Article in English | MEDLINE | ID: mdl-39244138

ABSTRACT

Mosquito-borne diseases pose a significant public health challenge globally. Our study focused on the seasonal diversity of mosquito species in the connecting areas of the Tenasserim (also known as Tanaosri) range forests in Thailand. Additionally, we employed the geometric morphometric technique to assess variations in wing size and shape among five predominant mosquito species. Throughout the study period, we collected a total of 9,522 mosquitoes, encompassing 42 species across eight genera. In these connecting areas of forests, the Simpson index and Shannon species diversity index were recorded at 0.86 and 2.36, respectively, indicating a high level of mosquito diversity. Our analysis using the Analysis of Similarities (ANOSIM) test showed significant seasonal differences in mosquito communities, with an R-value of 0.30 (p < 0.05) in the lower connecting areas and 0.37 (p < 0.05) in the upper connecting areas. Additionally, canonical correspondence analyses showed that the abundance of each mosquito species is influenced by various climate factors. Phenotypic analyses of wing size and shape have deepened our understanding of local adaptation and the seasonal pressures impacting these vectors. Notably, most species exhibited larger wing sizes in the dry season compared to other seasons. Additionally, seasonal assessments of wing shape in five predominant mosquito species revealed significant differences across seasonal populations (p < 0.05). Ongoing monitoring of these populations is crucial to enhancing our understanding of the seasonal effects on mosquito abundance and physiological adaptations. These insights are essential for developing more effective strategies to manage mosquito-borne diseases.


Subject(s)
Climate , Culicidae , Forests , Mosquito Vectors , Seasons , Animals , Thailand , Mosquito Vectors/anatomy & histology , Mosquito Vectors/physiology , Mosquito Vectors/growth & development , Mosquito Vectors/classification , Culicidae/anatomy & histology , Culicidae/physiology , Culicidae/growth & development , Culicidae/classification , Wings, Animal/anatomy & histology , Biodiversity
8.
Bone ; 189: 117263, 2024 Sep 21.
Article in English | MEDLINE | ID: mdl-39307297

ABSTRACT

Post-traumatic osteoarthritis (PTOA) in the temporomandibular joint (TMJ) is associated with remodeling of the subchondral bone. This remodeling changes both the external appearance of the condylar bone and the internal bony microstructure. The external geometry can be quantified using shape, a multivariate mathematical measurement that contains all of the structure's geometric information with location, scale, and rotation effects removed. There is an important gap in knowledge related to how TMJ PTOA affects the shape of the mandible and if the external shape covaries with the internal bony microstructure. To evaluate these gaps, TMJ PTOA was induced in male and female skeletally mature mice using a surgical destabilization procedure. After four weeks, tissues were collected and characterized using a high-resolution µCT scanner. Shape was calculated from surface reconstructions of the mandibular condyle, and the internal bony microstructure was characterized by the region of interest including the subchondral trabeculae. The covariance of shape with and without corrections for allometric scaling and internal bony microstructure was calculated using a Procrustes ANOVA. The data illustrate that PTOA significantly alters the shape of the condyle in a sex-independent manner. PTOA does alter some aspects of the internal bony microstructure in a sex-dependent manner. Allometric scaling was a significant factor in the variance of shape. Shape including the effects of allometric scaling significantly covaries with some internal bony microstructure variables in both sexes. Shape scaled to remove the effects of allometric scaling does not covary with internal bony microstructure in either sex. These findings indicate that PTOA progression is associated with changes in the size and shape of the condyle but variance in trabecular bone remodeling is only associated with size related shape change. Thus, the allostatic response of subchondral bone is multimodal, coordinating two independent biological processes controlling size and shape. Since subchondral bone participates in and guides the progression of PTOA, these findings have implications for identifying select and specific mechanisms contributing to the progression and pathophysiology of the PTOA in the TMJ.

9.
Br J Psychol ; 2024 Sep 30.
Article in English | MEDLINE | ID: mdl-39347699

ABSTRACT

Human migration is an increasingly common phenomenon and migrants are at risk of disadvantageous treatment. We reasoned that migrants may receive differential treatment by locals based on the closeness of their facial features to the host average. Residents of Türkiye, the country with the largest number of refugees currently, served as participants. Because many of these refugees are of Arabic origin, we created target facial stimuli varying along the axis connecting Turkish and Arabic morphological prototypes (excluding skin colour) computed using geometric morphometrics and available databases. Participants made judgements of two universal dimensions of social perception-warmth and competence-on these faces. We predicted that participants judging faces manipulated towards the Turkish average would provide higher warmth and competence ratings compared to judging the same faces manipulated towards the Arabic average. Bayesian statistical tools were employed to estimate parameter values in multilevel models with intercorrelated varying effects. The findings did not support the prediction and revealed raters (as well as target faces) to be an important source of variation in social judgements. In the absence of simple cues (e.g. skin colour, group labels), the effect of facial morphology on social judgements may be much more complex than previously assumed.

10.
Animals (Basel) ; 14(18)2024 Sep 13.
Article in English | MEDLINE | ID: mdl-39335254

ABSTRACT

The carapace morphology of tortoises is a crucial characteristic used for species identification, with features such as shell shape, roughness, and color patterns varying among species. Understanding this morphological diversity is valuable not only for taxonomic classification but also for more specialized clinical approaches. This study investigated the morphological differences in the shells of Leopard tortoises (Stigmochelys pardalis), African spurred tortoises (Centrochelys sulcata), and Greek tortoises (spur-thighed tortoises; Testudo graeca) raised in captivity. Using 3D scanners, the carapaces were modeled, and a 3D geometric morphometric method was employed to analyze shape variations and dimensional features, with landmarks applied automatically. Among the species studied, African spurred tortoises had the largest carapace size. Principal component analysis (PCA) identified PC1 and PC3 as critical factors in distinguishing between species based on morphological characteristics. Positive PC1 values, associated with a shorter carapace height, indicated a flatter or more compact shell shape. A higher PC3 value corresponded to a raised shape at the back of the shell, while a lower PC3 value indicated a raised shape at the front. Specifically, Leopard tortoises exhibited a higher carapace shape than the other species, while African spurred tortoises had shorter carapaces. An allometric effect was observed in the carapaces, where smaller specimens tended to be proportionately higher-domed, whereas larger shells displayed a lower height in shape. These findings highlight the significance of shape variations in tortoise shells, which emerge during adaptation and have important implications for taxonomy and clinical practice. Such differences should be carefully considered in veterinary care and species identification.

11.
Biol Lett ; 20(9): 20240103, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39319669

ABSTRACT

The Eurasian otter is a wide-ranging semi-aquatic mammal that underwent a significant population decline in the last century, leading to local extinctions, reduction and fragmentation of populations. The individuals of populations exposed to both external and internal stress may present the inability to produce a specific developmental outcome, generating developmental 'noise' (developmental instability (DI)). Factors contributing to DI include inbreeding depression, population bottlenecks, habitat loss and exposure to pollution. We analysed fluctuating asymmetry (FA) as a proxy of DI in two European otter populations that experienced a major decline in the 1990s. Using three-dimensional geometric morphometrics methods on skull samples of otters from the UK and Sweden, we compared the degree of FA both between populations before, during and after the decline. We found a higher FA in the UK populations compared with Sweden. The level of asymmetry differed significantly over time only in the UK population, where it was higher during the decline phase. FA in the UK populations can be attributed to the specific impact of polychlorinated biphenyls pollution that caused a bottleneck. More generally, our study suggests that habitat loss, pollution and limited gene flow may contribute to DI in declining otter populations, highlighting the need for continued investigation to identify and quantify the specific stressors behind this trend in local populations.


Subject(s)
Otters , Animals , Otters/physiology , Sweden , United Kingdom , Population Dynamics , Male , Skull/anatomy & histology , Female , Ecosystem
12.
Zoology (Jena) ; 166: 126197, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39232351

ABSTRACT

Living at high altitudes impose physiological and ecological challenges to which species may respond altering their body size, body proportions, and the shape of their body parts. Despite the importance of this topic for understanding the origin of species diversity, little attention has been invested in this phenomenon at the populational level. This paper study the relationship between altitude and body size, body proportions, and forewing shape venation of two populations of the parasitoid wasp Cotesia flavipes. Wasps were collected from Diatraea spp. larvae from sugarcane crops in two Colombian mountain ranges that cover between 600 m and 2143 m of altitude. Linear measurements of different body regions and geometric morphometrics of the forewing were subject to multivariate comparisons and allometric analyses to assess variation and to compare trends between ranges. Central (600 m to 1704 m) and Eastern Cordillera (877 m to 2143 m) populations showed different trends between body size and altitude. Allometric trends were not uniform within or between populations nor between structures. The allometric slopes of five body measurements from a single altitude differed from these from its own mountain range suggesting that body size trends along the cordilleras are a consequence of altitude and not of intrinsic body resource allocation processes. Wing shape between populations differed; however, these changes were poorly related to altitude. In agreement with recent studies in other groups, the observed allometric and wing shape differences between the two C. flavipes populations could be a plasticity response to altitude with interesting implications for posterior genetic differentiation.


Subject(s)
Altitude , Body Size , Wasps , Animals , Wasps/physiology , Wasps/anatomy & histology , Colombia , Wings, Animal/anatomy & histology
13.
Sci Rep ; 14(1): 21822, 2024 09 18.
Article in English | MEDLINE | ID: mdl-39294199

ABSTRACT

The turtle shell is a remarkable structure that has intrigued not only evolutionary biologists but also engineering and material scientists because of its multi-scale complexity and various functions. Although protection is its most apparent role, the carapace and plastron are also related to many physiological functions and their shape influences hydrodynamics and self-righting ability. As such, analysing the functional morphology of the shell could help understanding the ecology of Triassic stem-turtles, which will contribute to the century-long debate on the evolutionary origins of turtles. Here, we used 3D imaging techniques to digitize the shells of two of the earliest stem-turtle taxa, Proganochelys and Proterochersis, and submitted their models to biomechanical and shape analyses. We analysed the strength performance under five predation scenarios and tested the function of two morphological traits found in stem-turtles, the epiplastral processes and an attached pelvic girdle. The latter, also present in the crown-lineage of side-necked turtles, has been suggested to increase load-bearing capacity of the shell or to improve swimming in pleurodires. Our results do not confirm the shell-strengthening hypothesis and, together with the results of our shape analyses, suggest that at least one of the first stem-turtles (Proterochersis) was an aquatic animal.


Subject(s)
Animal Shells , Biological Evolution , Turtles , Turtles/physiology , Turtles/anatomy & histology , Animals , Biomechanical Phenomena , Animal Shells/anatomy & histology , Animal Shells/physiology , Fossils
14.
R Soc Open Sci ; 11(9): 240765, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39263457

ABSTRACT

Comparative neuroanatomical studies have long debated the role of development in the evolution of novel and disparate brain morphologies. Historically, these studies have emphasized whether evolutionary shifts along conserved or distinct developmental allometric trends cause changes in brain morphologies. However, the degree to which interspecific differences between variably sized taxa originate through modifying developmental allometry remains largely untested. Taxa with disparate brain shapes and sizes thus allow for investigation into how developmental trends contribute to neuroanatomical diversification. Here, we examine a developmental series of large-bodied ratite birds (approx. 60-140 kg). We use three-dimensional geometric morphometrics on cephalic endocasts of common ostriches, emus and southern cassowaries and compare their developmental trajectories with those of the more modestly sized domestic chicken, previously shown to be in the same allometric grade as ratites. The results suggest that ratites and chickens exhibit disparate endocranial shapes not simply accounted for by their size differences. When shape and age are examined, chickens partly exhibit more accelerated and mature brain shapes than ratites of similar size and age. Taken together, our study indicates that disparate brain shapes between these differently sized taxa have emerged from the evolution of distinct developmental allometries, rather than simply following conserved scaling trends.

15.
J Hum Evol ; 195: 103581, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39243703

ABSTRACT

The phylogenetic relationships of the small-bodied catarrhine Pliobates cataloniae (∼11.6 Ma, NE Iberian Peninsula) have been controversial since its original description. However, the recent report of additional dentognathic remains has supported its crouzeliid pliopithecoid status. Based on the available hypodigm, the molar enamel-dentine junction (EDJ) shape of P. cataloniae is compared with that of other pliopithecoids from the same basin as well as both extinct and extant hominoids to further evaluate its pliopithecoid affinities. We also quantitatively compare the EDJ shape among these taxa by means of landmark-based three-dimensional geometric morphometrics using principal component analysis (PCA), canonical variate analysis, and between-group PCA. Permutation tests are performed to test whether Pliobates variation exceeds that of extant hominoid genera. Results indicate that Pliobates is similar in molar EDJ shape to other pliopithecoids, particularly crouzeliids. The variation displayed by Pliobates upper molars is less marked at the EDJ level than at the outer enamel surface, probably owing to differential enamel wear and intraspecific differences in enamel thickness. Multivariate analyses of EDJ shape show that all pliopithecoids (including Pliobates) cluster together in the PCAs, canonical variate analyses, and between-group PCAs and occupy a different portion of the morphospaces from extinct and extant hominoids. Posterior and typicality probabilities strongly support the classification of Pliobates as a pliopithecoid, wheras permutation tests fail to reject the single-genus hypothesis for the P. cataloniae hypodigm. We conclude that P. cataloniae is a crouzeliid pliopithecoid, as recently supported by cladistic analyses of craniodental characters, and that previous cladistic results that supported a stem hominoid status are attributable to postcranial convergences with crown hominoids. Our results further highlight the potential of three-dimensional geometric morphometrics analyses of the EDJ shape for better informing fossil primate alpha-taxonomy by means of quantitatively testing hypotheses about tooth shape variation.


Subject(s)
Dental Enamel , Fossils , Molar , Animals , Molar/anatomy & histology , Dental Enamel/anatomy & histology , Fossils/anatomy & histology , Spain , Dentin/anatomy & histology , Catarrhini/anatomy & histology , Catarrhini/classification , Principal Component Analysis , Phylogeny , Hominidae/anatomy & histology , Hominidae/classification
16.
Mol Ecol ; : e17524, 2024 Sep 16.
Article in English | MEDLINE | ID: mdl-39279721

ABSTRACT

Convergent evolution of similar phenotypes suggests some predictability in the evolutionary trajectories of organisms, due to strong and repeated selective pressures, and/or developmental constraints. In adaptive radiations, particularly in cichlid fish radiations, convergent phenotypes are commonly found within and across geographical settings. Cichlids show major repeated axes of morphological diversification. Recurrent changes in body patterns reveal adaption to alternative habitats, and modifications of the trophic apparatus respond to the exploitation of different food resources. Here we compare morphologically and genetically two Neotropical cichlid assemblages, the Mexican desert cichlid and the Nicaraguan Midas cichlid, with similar polymorphic body and trophic adaptations despite their independent evolution. We found a common morphological axis of differentiation in trophic structures in both cichlid radiations, but two different axes of differentiation in body shape, defining two alternative limnetic body patterns. Adaptation to limnetic habitats implied regulation of immune functions in the Midas cichlid, while morphogenesis and metabolic functions in the desert cichlid. Convergent phenotypic adaptions could be associated to divergent gene regulation.

17.
Data Brief ; 56: 110799, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39252769

ABSTRACT

Conformation traits are important in the selection and distinction between horse breeds, but tend to be evaluated subjectively within a breed and cannot be compared between them. The horse shape space model, using a combination of 253 landmarks and semi-landmarks, provides objective information on the shape of a horse photographed from the side that can be compared between breeds. In this dataset, we are providing the full set of 253 landmarks for 1241 horses from seven breeds, including an R code file to extract joint angle information and transform the raw data into csv files for further analysis, such as breed comparisons, heritability or genome-wide association studies (single- or multibreed). The repeatability of the joint angles are also reported.

18.
Acta Otolaryngol ; 144(7-8): 409-416, 2024.
Article in English | MEDLINE | ID: mdl-39154208

ABSTRACT

BACKGROUND: Cochlear dimension measurements are critical in diagnosing and managing congenital sensorineural hearing loss. OBJECTIVES: To evaluate the feasibility and reliability of an automated landmark approach for measuring cochlear dimensions (A-, B- and H-values). MATERIAL AND METHODS: Cochlear parameters from 100 patients were measured by MPR, manual three-dimensional and ALPACA. We assessed intra- and inter-observer reliability as well as inter-method reliability. Statistical analyses were conducted to detect differences between the right and left ears, as well as to assess the relevance of the values obtained using ALPACA. RESULTS: All A-, B-, and H-values measured by the various methods showed a high intra-observer reliability with intra-class correlation coefficients (ICC) ranging from 0.70 to 0.99, and values gained by ALPACA reaching the highest ICC. Inter-method reliability was at a good level with ICC ranging from 0.51 to 0.86. There were no significant differences between the right and left ears' measured values. Obvious positive correlations existed among cochlear dimensions measured by ALPACA. CONCLUSIONS AND SIGNIFICANCE: The ALPACA method can be used to measure cochlear dimensions. Values obtained by the method demonstrate high reliability and consistency with a significant reduction in intra-observer variability compared to results from conventional MPR and manual 3D measurements.


Subject(s)
Cochlea , Cochlea/diagnostic imaging , Cochlea/abnormalities , Cochlea/anatomy & histology , Cochlea/pathology , Humans , Reproducibility of Results , Female , Male , Child , Observer Variation , Hearing Loss, Sensorineural/diagnosis , Feasibility Studies , Child, Preschool , Imaging, Three-Dimensional , Adolescent
19.
J Anat ; 2024 Aug 19.
Article in English | MEDLINE | ID: mdl-39161228

ABSTRACT

Scapula shape is highly variable across humans and appears to be sexually dimorphic-differing significantly between biological males and females. However, previous investigations of sexual dimorphism in scapula shape have not considered the effects of allometry (the relationship between size and shape). Disentangling allometry from sexual dimorphism is necessary because apparent sex-based differences in shape could be due to inherent differences in body size. This study aimed to investigate sexual dimorphism in scapula shape and examine the role of allometry in sex-based variation. We used three-dimensional geometric morphometrics with Procrustes ANOVA to quantify scapula shape variation associated with sex and size in 125 scapulae. Scapula shape significantly differed between males and females, and males tended to have larger scapulae than females for the same body height. We found that males and females exhibited distinct allometric relationships, and sexually dimorphic shape changes did not align with male- or female-specific allometry. A secondary test revealed that sexual dimorphism in scapula shape persisted between males and females of similar body heights. Overall, our findings indicate that there are sex-based differences in scapula shape that cannot be attributed to size-shape relationships. Our results shed light on the potential role of sexual selection in human shoulder evolution, present new hypotheses for biomechanical differences in shoulder function between sexes, and identify relevant traits for improving sex classification accuracy in forensic analyses.

20.
Sci Rep ; 14(1): 17901, 2024 08 02.
Article in English | MEDLINE | ID: mdl-39095435

ABSTRACT

While brain size in primates and their relatives within Euarchontoglires is well-studied, less research has examined brain shape, or the allometric trajectories that underlie the relationship between size and shape. Defining these patterns is key to understanding evolutionary trends. 3D geometric morphometric analyses of endocranial shape were performed on 140 species of extant euarchontoglirans using digital cranial endocasts. Principal component analyses on Procrustes shape variables show a clear phylogenetic pattern in endocranial shape, supported by an ANOVA which identified significant differences in shape among several groups (e.g., Platyrrhini, Strepsirrhini, Scandentia, Rodentia, and Lagomorpha). ANOVAs of shape and size also indicate that allometry has a small but significant impact on endocranial shape across Euarchontoglires, with homogeneity of slopes tests finding significant differences in the scaling relationship between shape and size among these same groups. While most of these clades possess a distinct endocranial morphotype, the highly derived platyrrhines display the strongest relationship between size and shape. Rodents show the most diversity in endocranial shape, potentially attributed to their comparatively weak relationship between shape and size. These results suggest fundamental differences in how shape and size covary among Euarchontoglires, which may have facilitated the adaptive radiations that characterize members of this group.


Subject(s)
Biological Evolution , Phylogeny , Skull , Animals , Skull/anatomy & histology , Fossils/anatomy & histology , Principal Component Analysis , Brain/anatomy & histology , Primates/anatomy & histology
SELECTION OF CITATIONS
SEARCH DETAIL