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1.
JMIR Form Res ; 8: e54009, 2024 Aug 01.
Article in English | MEDLINE | ID: mdl-39088821

ABSTRACT

BACKGROUND: A coordinated care system helps provide timely access to treatment for suspected acute stroke. In Northwestern Ontario (NWO), Canada, communities are widespread with several hospitals offering various diagnostic equipment and services. Thus, resources are limited, and health care providers must often transfer patients with stroke to different hospital locations to ensure the most appropriate care access within recommended time frames. However, health care providers frequently situated temporarily (locum) in NWO or providing care remotely from other areas of Ontario may lack sufficient information and experience in the region to access care for a patient with a time-sensitive condition. Suboptimal decision-making may lead to multiple transfers before definitive stroke care is obtained, resulting in poor outcomes and additional health care system costs. OBJECTIVE: We aimed to develop a tool to inform and assist NWO health care providers in determining the best transfer options for patients with stroke to provide the most efficient care access. We aimed to develop an app using a comprehensive geomapping navigation and estimation system based on machine learning algorithms. This app uses key stroke-related timelines including the last time the patient was known to be well, patient location, treatment options, and imaging availability at different health care facilities. METHODS: Using historical data (2008-2020), an accurate prediction model using machine learning methods was developed and incorporated into a mobile app. These data contained parameters regarding air (Ornge) and land medical transport (3 services), which were preprocessed and cleaned. For cases in which Ornge air services and land ambulance medical transport were both involved in a patient transport process, data were merged and time intervals of the transport journey were determined. The data were distributed for training (35%), testing (35%), and validation (30%) of the prediction model. RESULTS: In total, 70,623 records were collected in the data set from Ornge and land medical transport services to develop a prediction model. Various learning models were analyzed; all learning models perform better than the simple average of all points in predicting output variables. The decision tree model provided more accurate results than the other models. The decision tree model performed remarkably well, with the values from testing, validation, and the model within a close range. This model was used to develop the "NWO Navigate Stroke" system. The system provides accurate results and demonstrates that a mobile app can be a significant tool for health care providers navigating stroke care in NWO, potentially impacting patient care and outcomes. CONCLUSIONS: The NWO Navigate Stroke system uses a data-driven, reliable, accurate prediction model while considering all variations and is simultaneously linked to all required acute stroke management pathways and tools. It was tested using historical data, and the next step will to involve usability testing with end users.

2.
Data Brief ; 55: 110739, 2024 Aug.
Article in English | MEDLINE | ID: mdl-39091699

ABSTRACT

This dataset consists of 190,832 manually-digitized cropland field boundaries, with associated attributes, within Brazil, Ukraine, United States of America, Canada, and Russia. Specifically, 22 regions of various sizes (74km2 - 38,000km2) spanning 5 countries were digitized over a range of predominant crop types over different time periods. These field boundaries were drawn over 20 m Sentinel-2 imagery. This field boundary dataset is a byproduct of a larger effort to map cropland burned area (Global Cropland Area Burned: GloCAB product [1]), however, it has several benefits beyond its original intent, including as a training dataset for machine-learning field size analyses, or a dataset to derive cropland field characteristics across different predominant crop types and geographies.

3.
Mov Ecol ; 12(1): 54, 2024 Aug 01.
Article in English | MEDLINE | ID: mdl-39090724

ABSTRACT

BACKGROUND: Small songbirds respond and adapt to various geographical barriers during their annual migration. Global flyways reveal the diverse migration strategies in response to different geographical barriers, among which are high-elevation plateaus. However, few studies have been focused on the largest and highest plateau in the world, the Qinghai-Tibet Plateau (QTP) which poses a significant barrier to migratory passerines. The present study explored the annual migration routes and strategies of a population of Siberian Rubythroats (Calliope calliope) that breed on the north-eastern edge of the QTP. METHODS: Over the period from 2021 to 2023, we applied light-level geolocators (13 deployed, seven recollected), archival GPS tags (45 deployed, 17 recollected), and CAnMove multi-sensor loggers (with barometer, accelerometer, thermometer, and light sensor, 20 deployed, six recollected) to adult males from the breeding population of Siberian Rubythroat on the QTP. Here we describe the migratory routes and phenology extracted or inferred from the GPS and multi-sensor logger data, and used a combination of accelerometric and barometric data to describe the elevational migration pattern, flight altitude, and flight duration. All light-level geolocators failed to collect suitable data. RESULTS: Both GPS locations and positions derived from pressure-based inference revealed that during autumn, the migration route detoured from the bee-line between breeding and wintering grounds, leading to a gradual elevational decrease. The spring route was more direct, with more flights over mountainous areas in western China. This different migration route during spring probably reflects a strategy for faster migration, which corresponds with more frequent long nocturnal migration flights and shorter stopovers during spring migration than in autumn. The average flight altitude (1856 ± 781 m above sea level) was correlated with ground elevation but did not differ between the seasons. CONCLUSIONS: Our finding indicates strong, season-dependent impact of the Qinghai-Tibet Plateau on shaping passerine migration strategies. We hereby call for more attention to the unexplored central-China flyway to extend our knowledge on the environment-migration interaction among small passerines.

4.
Adv Parasitol ; 125: 1-52, 2024.
Article in English | MEDLINE | ID: mdl-39095110

ABSTRACT

As we strive towards the ambitious goal of malaria elimination, we must embrace integrated strategies and interventions. Like many diseases, malaria is heterogeneously distributed. This inherent spatial component means that geography and geospatial data is likely to have an important role in malaria control strategies. For instance, focussing interventions in areas where malaria risk is highest is likely to provide more cost-effective malaria control programmes. Equally, many malaria vector control strategies, particularly interventions like larval source management, would benefit from accurate maps of malaria vector habitats - sources of water that are used for malarial mosquito oviposition and larval development. In many landscapes, particularly in rural areas, the formation and persistence of these habitats is controlled by geographical factors, notably those related to hydrology. This is especially true for malaria vector species like Anopheles funestsus that show a preference for more permanent, often naturally occurring water sources like small rivers and spring-fed ponds. Previous work has embraced geographical concepts, techniques, and geospatial data for studying malaria risk and vector habitats. But there is much to be learnt if we are to fully exploit what the broader geographical discipline can offer in terms of operational malaria control, particularly in the face of a changing climate. This chapter outlines potential new directions related to several geographical concepts, data sources and analytical approaches, including terrain analysis, satellite imagery, drone technology and field-based observations. These directions are discussed within the context of designing new protocols and procedures that could be readily deployed within malaria control programmes, particularly those within sub-Saharan Africa, with a particular focus on experiences in the Kilombero Valley and the Zanzibar Archipelago, United Republic of Tanzania.


Subject(s)
Anopheles , Malaria , Mosquito Control , Mosquito Vectors , Malaria/prevention & control , Malaria/epidemiology , Malaria/transmission , Animals , Mosquito Vectors/physiology , Mosquito Control/methods , Humans , Anopheles/physiology , Anopheles/parasitology , Ecosystem , Geography
5.
Zookeys ; 1208: 99-132, 2024.
Article in English | MEDLINE | ID: mdl-39108337

ABSTRACT

Plant trade and exchange for horticulture, recreation or research play a significant role in the dispersal of molluscs. Alien slugs and snails accidentally introduced into Europe have established rich communities in several countries, but although these introductions could have ecological and economic implications, mollusc xenodiversity in Italian botanical gardens, plant nurseries, and greenhouses has never been investigated. Facilities throughout the country were therefore visited between 2017 and 2023. Here the list of the achatinoidean species so far recorded from Italian greenhouses is provided, giving a short description of their diagnostic characters. The greenhouses of Trento and Padua host interesting assemblages of achatinoideans: the results of this study include the first reports of four achatinids, namely Allopeasclavulinum, Opeashannense, Paropeasachatinaceum and Subulinaoctona from Italy and the first record of Geostilbiaaperta from Europe. Reproductive anatomy of all species except Geostilbiaaperta is illustrated in detail, integrating anatomical knowledge of this group of tiny molluscs, some of which are known mainly from their shell characters. The systematics of all the species is discussed, highlighting topics for future research (e.g., status of Allopeasmauritianum, real identity of Helixhannense, anatomy of Opeashannense, species-level taxonomy of Subulina, systematic relationships and species-level taxonomy of Geostilbia).

6.
Int J Health Policy Manag ; 13: 8231, 2024.
Article in English | MEDLINE | ID: mdl-39099503

ABSTRACT

BACKGROUND: Most the Organization for Economic Co-operation and Development (OECD) countries are currently facing the challenges of the health transition, the aging of their populations and the increase in chronic diseases. Effective and comprehensive primary healthcare (PHC) services are considered essential for establishing an equitable, and cost-effective healthcare system. Developing care coordination and, on a broader scale, care integration, is a guarantee of quality healthcare delivery. The development of healthcare systems at the meso-level supports this ambition and results in a process of territorial structuring of PHC. In France, the Health Territorial and Professional Communities (HTPC) constitute meso-level organizations in which healthcare professionals (HCPs) from the same territory gather. We conducted a study to determine, in a qualitative step, the key elements of the territorial structuring of PHC in France and, then, to develop, in a quantitative step, a typology of this structuring. METHODS: A sequential-exploratory mixed-method study with a qualitative step using a multiple case approach and a quantitative step as a hierarchical clustering on principal components (HCPC) from a multiple correspondence analysis (MCA). RESULTS: A total of 7 territories were qualitatively explored. Territorial structuring appears to depend on: past collaborations at the micro-level, meso-level coordination among HCPs and multiprofessional structures, diversity of independent professionals, demographic dynamics attracting young professionals, and public health investment through local health contracts (LHCs). The typology identifies 4 clusters of mainland French territories based on their level of structuring: under or unstructured (38.6%), with potential for structuring (34.7%), in the way for structuring (25.3%) and already structured territories (1.4%). CONCLUSION: Interest in territorial structuring aligns with challenges in meso-level healthcare organization and the need for integrated care. Typologies of territorial structuring should be used to understand its impact on access, care quality, and medical resources.


Subject(s)
Primary Health Care , France , Primary Health Care/organization & administration , Humans , Territoriality , Delivery of Health Care/organization & administration , Health Personnel/organization & administration , Health Personnel/statistics & numerical data
7.
iScience ; 27(6): 109883, 2024 Jun 21.
Article in English | MEDLINE | ID: mdl-38974474

ABSTRACT

In this study, we addressed two primary challenges: firstly, the issue of domain shift, which pertains to changes in data characteristics or context that can impact model performance, and secondly, the discrepancy between semantic similarity and geographical distance. We employed topic modeling in conjunction with the BERT architecture. Our model was crafted to enhance similarity computations applied to geospatial text, aiming to integrate both semantic similarity and geographical proximity. We tested the model on two datasets, Persian Wikipedia articles and rental property advertisements. The findings demonstrate that the model effectively improved the correlation between semantic similarity and geographical distance. Furthermore, evaluation by real-world users within a recommender system context revealed a notable increase in user satisfaction by approximately 22% for Wikipedia articles and 56% for advertisements.

8.
Lancet Reg Health West Pac ; 47: 101117, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38974661

ABSTRACT

Background: Dementia poses great health and social challenges in China. Dementia prevalence may vary across geographic areas, while comparable estimations on provincial level is lacking. This study aims to estimate dementia prevalence by provinces across China, taking into account risk factors of individual level and potential spatial correlation of provinces. Methods: In this study, 17,176 adults aged 50 years or older were included from the fourth wave of the China Health and Retirement Longitudinal Study (CHARLS 2018), covering 28 provinces, autonomous regions and municipalities. To improve provincial representativeness, we constructed provincial survey weights based on China 7th census (2020). The prevalence of dementia and 95% Bayesian credible intervals (BCIs) were estimated using a Bayesian conditional autoregressive (CAR) model with spatially varying coefficients of covariates. Findings: The weighted prevalence of dementia at provincial level in China in 2018 ranged from 2.62% (95%BCI: 1.70%, 3.91%) to 13.53% (95%BCI: 8.82%, 20.93%). High dementia prevalence was concentrated in North China, with a prominent high-high cluster, while provinces of low prevalence were concentrated on East and South China, characterized by a low-low cluster. Ordered by the median estimation of prevalence, the top 10% of provinces, include Xinjiang, Jilin, and Beijing. Meanwhile, Fujian, Zhejiang, and Guangdong rank among the last. The association between dementia prevalence and drinking, smoking, social isolation, physical inactivity, hearing impairment, hypertension, and diabetes exhibits provincial variation. Interpretation: Our study identifies a geospatial disparity in dementia prevalence and risk factor effects across China's provinces, with high-high and low-low clusters in some northern and southern provinces, respectively. The findings emphasize the need for targeted strategies, such as addressing hypertension and hearing impairment, in specific regions for more effective dementia prevention and treatment. Funding: National Science Foundation of China/the Economic and Social Research Council, UK Research and Innovation joint call: Understanding and Addressing Health and Social Challenges for Ageing in the UK and China. UK-China Health And Social Challenges Ageing Project (UKCHASCAP): present and future burden of dementia, and policy responses (grant number 72061137003, ES/T014377/1).

9.
Front Plant Sci ; 15: 1415059, 2024.
Article in English | MEDLINE | ID: mdl-38952845

ABSTRACT

Introduction: Phenotypic complexity in species complexes and recently radiated lineages has resulted in a diversity of forms that have historically been classified into separate taxa. Increasingly, with the proliferation of high-throughput sequencing methods, additional layers of complexity have been recognized, such as frequent hybridization and reticulation, which may call into question the previous morphological groupings of closely related organisms. Methods: We investigated Northern European, Asian, and Beringian populations of Ranunculus auricomus agg. with phylogenomic analysis of 736 genes and 27,586 SNPs in order to deduce the interrelatedness and hybrid origin of this phenotypically and taxonomically complicated group from Europe characterized by a history of hybridization, polyploidy, apomixis, and recent radiation. The ploidy levels and the reproductive mode of the Northern European populations were assessed via flow cytometric seed screening. In addition, in order to examine the phenotypic plasticity of the dwarf forms previously described as species and summarized as the Ranunculus monophyllus group, we conducted climate chamber experiments under cold (northern) and warm (temperate) conditions. Results: The Northern European populations are tetra- to hexaploid and propagate primarily through apomixis. The complex is characterized by highly reticulate relationships. Genetic differentiation of the main clusters has occurred between the above-mentioned geographical regions. We find evidence for the hybrid origin of the taxa in these areas with differing genomic contributions from the geographically nearest European sexual progenitor species. Furthermore, polyphyly in the taxa of the R. monophyllus group is supported. Experiments show low lability in the traits associated with the R. monophyllus group. Discussion: We conclude that multiple adaptations of hybrids to colder climates and shorter vegetation periods have shaped the phenotypes of the R. monophyllus group, and we suggest a formal classification as nothotaxa within the R. auricomus group.

10.
Environ Geochem Health ; 46(8): 272, 2024 Jul 03.
Article in English | MEDLINE | ID: mdl-38958785

ABSTRACT

Mycotoxin contamination poses a significant problem in developing countries, particularly in northern Pakistan's fluctuating climate. This study aimed to assess aflatoxin contamination in medicinal and condiment plants in Upper Dir (dry-temperate) and Upper Swat (moist-temperate) districts. Plant samples were collected and screened for mycotoxins (Aflatoxin-B1 and Aflatoxin-B-2). Results showed high levels of AFB-1 (11,505.42 ± 188.82) as compared to AFB-2 (846 ± 241.56). The maximum contamination of AFB-1 in Coriandrum sativum (1154.5 ± 13.43 ng to 3328 ± 9.9 ng) followed by F. vulgare (883 ± 9.89 ng to 2483 ± 8.4 ng), T. ammi (815 ± 11.31 ng to 2316 ± 7.1 ng), and C. longa (935.5 ± 2.12 ng to 2009 ± 4.2 ng) while the minimum was reported in C. cyminum (671 ± 9.91 ng to 1995 ± 5.7 ng). Antifungal tests indicated potential resistance in certain plant species (C. cyminum) while A. flavus as the most toxins contributing species due to high resistance below 80% (54.2 ± 0.55 to 79.5 ± 2.02). HPLC analysis revealed hydroxyl benzoic acid (5136 amu) as the dominant average phytochemical followed by phloroglucinol (4144.31 amu) with individual contribution of 8542.08 amu and 12,181.5 amu from C. cyaminum. The comparison of average phytochemicals revealed the maximum concentration in C. cyminum (2885.95) followed by C. longa (1892.73). The findings revealed a statistically significant and robust negative correlation (y = - 2.7239 × + 5141.9; r = - 0.8136; p < 0.05) between average mycotoxins and phytochemical concentrations. Temperature positively correlated with aflatoxin levels (p < 0.01), while humidity had a weaker correlation. Elevation showed a negative correlation (p < 0.05), while geographical factors (latitude and longitude) had mixed correlations (p < 0.05). Specific regions exhibited increasing aflatoxin trends due to climatic and geographic factors.


Subject(s)
Aflatoxins , Phytochemicals , Pakistan , Aflatoxins/analysis , Phytochemicals/pharmacology , Phytochemicals/analysis , Plants, Medicinal/chemistry , Plants, Medicinal/microbiology , Climate
11.
Environ Res ; 259: 119520, 2024 Jul 02.
Article in English | MEDLINE | ID: mdl-38964572

ABSTRACT

This study investigated land use and land cover changes in the Gauteng Province of South Africa with emphasis on wetland ecosystems. Using Landsat images and various image manipulation software such as ArcGIS and ENVI, this study conducted a predictive analysis of the potential state of wetland ecosystems in the Gauteng Province of South Africa by year 2040, using illegal dumping trends in the last 20 years. Based on this methodological framework, it is found that continued illegal dumping trends would lead to an almost total disappearance of wetlands in the study area by 2040. It is argued that despite the pro-environmental initiatives introduced in the early 2000s to conserve wetlands in South Africa, wetland deterioration has increased rapidly due to the associated methodological flaws, which further supports the findings of this study. Ultimately, it is recommended that a collaborative approach to wetland conservation, and a robust methodological shift are required to mitigate the threats faced by wetlands in the Gauteng Province of South Africa, and the model can be deployed across developing countries.

12.
Heliyon ; 10(11): e32347, 2024 Jun 15.
Article in English | MEDLINE | ID: mdl-38961995

ABSTRACT

Generally, drought is influenced by both spatial characteristics and anthropogenic activities within an area. Drought vulnerability assessment is a critical tool that can be effectively used to develop proper drought mitigation strategies to prevent avoidable losses. To develop suitable drought mitigation strategies, the overall drought vulnerability must be assessed, and the interaction among drought-influencing factors in the area should be considered. Consequently, this study aimed to investigate the interactions among critical drought-influencing factors and drought vulnerability in the Lam Ta Kong Watershed via spatial analysis with the analytical hierarchy process (AHP) and geographical information system (GIS) technology. Ten drought-influencing factors were considered in the vulnerability assessment: slope, elevation, soil texture, soil fertility, stream density, precipitation, temperature, precipitation days, evaporation, and land use. The results indicated that the critical drought-influencing factors were precipitation, precipitation days, and land use, resulting in most of the watershed experiencing high drought vulnerability (35.1% of the watershed or 1810.83 km2). Moreover, this research highlighted the interactions among the critical drought-influencing factors. Precipitation interacted with precipitation days to cause drought vulnerability across the watershed, with a p-value <0.05. Similarly, the interactions between precipitation and land use and between precipitation days and land use, with p-values <0.05, showed that they were associated with and influenced by drought in the Lam Ta Kong Watershed. This study further indicated that appropriate drought mitigation strategies for this watershed must consider the interactions among these drought-influencing factors, as well as their specific interactions across the watershed.

13.
Water Res ; 263: 122165, 2024 Jul 27.
Article in English | MEDLINE | ID: mdl-39084090

ABSTRACT

Psychopharmaceuticals and illicit drugs (PIDs) in aquatic environments can negatively impact ecosystem and human health. However, data on the sources, distribution, drivers, and risks of PIDs in global surface waters are limited. We compiled a dataset of 331 records spanning 23 PIDs in surface waters and sediments across 100 countries by conducting a systematic review and meta-analysis of 108 studies published between 2005 and 2022. Most PIDs were sewage-derived, as wastewater treatment rarely achieved complete removal. The highest total PID levels were in Ethiopia, Australia, and Armenia, with many highly contaminated samples from low- and middle-income countries with minimal prior monitoring. Socioeconomic factors (population, GDP) and environmental variables (water stress) influenced the distribution of PIDs. 3,4-Methylenedioxy amphetamine hydrochloride (MDA), Δ9-tetrahydrocannabinol (THC), and 11- Δ9­hydroxy-tetrahydrocannabinol (THCOH) posed the greatest ecological risks, especially in Oceania and North America. PIDs in surface waters present risks to aquatic organisms. Our findings elucidate the current status and future directions of PID research in surface waters and provide a scientific foundation for evaluating ecological risks and informing pollution control policies.

14.
Biology (Basel) ; 13(7)2024 Jul 17.
Article in English | MEDLINE | ID: mdl-39056731

ABSTRACT

The changing global climate has significantly impacted the spread of plant pests. The cassava mealybug (Phenacoccus manihoti) is among the most dangerous quarantine pests affecting cassavas worldwide, causing substantial losses in agricultural production and food security across several regions. Although China is currently free of the cassava mealybug, its proximity to affected countries and extensive trade with these regions necessitate a detailed understanding of the pest's distribution pattern and dynamic ecological niche changes. Using the Biomod2 model, we selected two historical climate scenarios and two future climate scenarios (SSP1-2.6 and SSP5-8.5) to investigate the distribution patterns, potential habitats, distribution centers, and dynamic ecological niches of cassava mealybugs in China. Key environmental variables influencing the distribution were identified, including bio4, bio8, bio12, bio18, and bio19. The potential habitat of cassava mealybugs is mainly located in several provinces in southern China. In the future, the suitable habitat is projected to expand slightly under the influence of climate change, maintaining the overall trend, but the distribution center of suitable areas will shift northward. Dynamic ecological niche prediction results indicate the potential for further expansion; however, the ecological niches may be unequal and dissimilar in the invaded areas. The predictions could serve as a valuable reference for early warning systems and management strategies to control the introduction of cassava mealybugs.

15.
Curr Issues Mol Biol ; 46(7): 6665-6674, 2024 Jun 29.
Article in English | MEDLINE | ID: mdl-39057039

ABSTRACT

The Maastricht VI/Florence consensus recommends, as one of the measures to enhance the efficacy of Helicobacter pylori infection eradication, a personalized treatment approach involving the selection of an antimicrobial agent based on the pre-determined resistance of H. pylori. To address the need to develop test systems for personalized drug selection, this study was designed to analyze the molecular resistance of H. pylori using a newly developed Sanger sequencing test platform. The characteristics of the test system were determined on 25 pure culture samples of H. pylori with known resistance. Sensitivity and specificity for detecting resistance to clarithromycin was 100% and those to levofloxacin were 93% and 92%, respectively. The test system has been tested in real clinical practice on 112 H. pylori-positive patients who had not previously received proton pump inhibitors (PPIs) or antibacterial drugs. Mutations indicating resistance to clarithromycin were found in 27 (24%) samples and those indicating resistance to levofloxacin were found in 26 (23%) samples. Double resistance was observed in 16 (14%) samples. The most common mutations leading to clarithromycin resistance were 2143G and 2142G and to levofloxacin resistance-261A and 271A in the gyrA gene, which account for 69% of all identified genetic determinants in levofloxacin-resistant bacteria. Thus, a personalized approach to the selection of H. pylori eradication therapy based on the detection of bacterial resistance before prescribing first-line therapy could help to avoid the prescription of ineffective H. pylori eradication therapies and, overall, contribute to the control of antibiotic resistance of H. pylori.

16.
Mol Ecol ; : e17483, 2024 Jul 26.
Article in English | MEDLINE | ID: mdl-39056407

ABSTRACT

Adaptive differentiation of traits and underlying loci can occur at a small geographical scale if natural selection is stronger than countervailing gene flow and drift. We investigated this hypothesis using coupled quantitative genetic and genomic approaches for a wind-pollinated tree species, Quercus rubra, along the steep, narrow gradient of the Lake Superior coast that encompasses four USDA Hardiness Zones within 100 km. For the quantitative genetic component of this study, we examined phenotypic differentiation among eight populations in a common garden, measuring seed mass, germination, height, stem diameter, leaf number, specific leaf area and survival. For the genomic component, we quantified genetic differentiation for 26 populations from the same region using RAD-seq. Because hybridisation with Quercus ellipsoidalis occurs in other parts of the species' range, we included two populations of this congener for comparison. In the common garden study, we found a strong signal of population differentiation that was significantly associated with at least one climate factor for nine of 10 measured traits. In contrast, we found no evidence of genomic differentiation among populations based on FST or any other measures. However, both distance-based and genotype-environment association analyses identified loci showing the signature of selection, with one locus in common across five analyses. This locus was associated with the minimum temperature of the coldest month, a factor that defines the climate zones and was also significant in the common garden analyses. In addition, we documented introgression from Q. ellipsoidalis into Q. rubra, with rates of introgression correlated with the climate gradient. In sum, this study reveals signatures of selection at the quantitative trait and genomic level consistent with climate adaptation, a pattern that is more often documented at a much broader geographical scale, especially in long-lived wind-pollinated species.

17.
Sci Rep ; 14(1): 17510, 2024 Jul 30.
Article in English | MEDLINE | ID: mdl-39080389

ABSTRACT

Land degradation significantly impacts regional economic development and food security, particularly in arid river basins where soil and water conservation is crucial. Understanding the extent and causes of land degradation is pivotal for effectively prevention and management. This study employs the soil adjusted vegetation index (SAVI), the temperature vegetation dryness index (TVDI), and the salinization detection index (SDI), combined with the analytic hierarchy process and the entropy weight method, to construct a comprehensive land degradation index (LDI). Sen's slope trend analysis and the Mann-Kendall significance test were used to analyze land degradation trends in the Ebinur Lake watershed from 2002 to 2022. Additionally, the optimal parameters-based geographical detector was used to examine the underlying mechanisms of land degradation. The results indicate the following: (1) From 2002 to 2012, the degree of land degradation in the Ebinur Lake watershed worsened, particularly in the eastern and southeastern parts, as well as in the southern region of Toli County. From 2012 to 2022, land degradation significantly improved, with a notable reduction in degraded land area. (2) Over the period of 2002-2022, 93.08 % of the land in the research region exhibited a declining LDI trend, 3.95 % showed no change, and only 2.96 % showed an increasing LDI trend. (3) Moderate, severe, and very severe degradation mainly occurred on grassland and unused land, while light degradation and non-degradation primarily occurred on forest land and cultivated land. (4) Unreasonable land use and overgrazing were identified as the primary factors influencing land degradation, with elevation being a secondary factor. The interaction between land use and other factors was found to be most significant, followed by the synergistic effects of grazing quantity with elevation, annual average temperature, gross domestic product, soil moisture, and elevation with annual average precipitation, and temperature. The results of this study offer an empirical basis and taking decisions assistance for land degradation control in the Ebinur Lake Basin, as well as examples and references for assessing land degradation in other places.

18.
AoB Plants ; 16(4): plae037, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38993261

ABSTRACT

n the Neotropics, the focus of apomictic studies predominantly centres on trees within the Brazilian savanna, characterized, mostly as sporophytic and facultative, associated with polyploidy and polyembryony. To enhance our understanding of the mechanisms governing apomixis and sexual reproduction in tropical herbaceous plants, we clarify the relationship between apomixis, chromosome counts, and polyembryony in the epiphytic orchid Zygopetalum mackayi, which forms a polyploid complex within rocky outcrops in both the Brazilian savanna and the Atlantic forest. To define embryo origins and describe megasporogenesis and megagametogenesis, we performed manual self-pollinations in first-day flowers of cultivated plants, considering all three cytotypes (2x, 3x, 4x) of this species. Flowers and fruits at different stages were collected to describe the development and morphology of ovules and seeds considering sexual and apomictic processes. As self-pollination treatments resulted in high fruit abortion in diploids, we also examined pollen tube development in aborted flowers and fruits to search for putative anomalies. Megasporogenesis and megagametogenesis occur regularly in all cytotypes. Apomixis is facultative and sporophytic, and associated with polyploid cytotypes, while diploid individuals exclusively engage in sexual reproduction. Polyembryony is caused mainly by the production of adventitious embryos from nucellar cells of triploids and tetraploids, but also by the development of multiple archesporia in all cytotypes. Like other apomictic angiosperms within the Brazilian savanna, our findings demonstrate that apomixis in Z. mackayi relies on pollinators for seed production. We also consider the ecological implications of these apomictic patterns in Z. mackayi within the context of habitat loss and its dependence on pollinators.

19.
Parasitol Res ; 123(7): 265, 2024 Jul 10.
Article in English | MEDLINE | ID: mdl-38985332

ABSTRACT

Perkinsus, a parasitic pathogen of marine bivalves, is widely distributed among various mollusks in numerous countries. However, the prevalence and diversity of Perkinsus species in the two economically important mussels, Mytilus coruscus and M. galloprovincialis, in China remain unknown. The presence of the Perkinsus species was identified in the two mussels sampled along the coast of the East China Sea and the Yellow Sea, using both the alternative Ray's fluid thioglycolate medium (ARFTM) and conventional polymerase chain reaction (PCR). The ARFTM test indicated the presence of Perkinsus-like hypnospores in the two mussels. The diameter of the hypnospores in M. coruscus was significantly smaller than that in M. galloprovincialis. The prevalence of Perkinsus in M. galloprovincialis and M. coruscus ranged from 0 to 37.5% and 0 to 25%, respectively. The mean intensity of Perkinsus in M. galloprovincialis and M. coruscus ranged from 0 to 5.14 and 0 to 4.92, respectively. The PCR assay showed that the prevalence of Perkinsus spp. in M. galloprovincialis and M. coruscus was 0 to 25.0% and 0 to 12.5%, respectively. The homology analysis of the newly obtained internal transcribed spacer (ITS) sequences of Perkinsus revealed the highest identity of 100% with P. beihaiensis. The phylogenetic analysis indicated that the Perkinsus isolates from the two mussels were clustered with P. beihaiensis. The results of the molecular biology indicated that only P. beihaiensis was detected in the two mussels. The highest prevalence of P. beihaiensis was observed in Liaoning province (Dalian, 20.83%), followed by Shandong province, Zhejiang province and Fujian province. Consequently, it is recommended that surveillance should be conducted in Dalian, where the prevalence and mean intensity of P. beihaiensis in M. galloprovincialis are the highest.


Subject(s)
Mytilus , Animals , Mytilus/parasitology , China/epidemiology , Phylogeny , Polymerase Chain Reaction , Sequence Analysis, DNA , Alveolata/genetics , Alveolata/isolation & purification , Alveolata/classification , DNA, Protozoan/genetics , Molecular Sequence Data , Prevalence , Oceans and Seas
20.
J Food Sci ; 89(8): 4806-4822, 2024 Aug.
Article in English | MEDLINE | ID: mdl-39013018

ABSTRACT

Turkey is the leading producer of hazelnuts, contributing to 62% of the total global production. Among 18 distinct local hazelnut cultivars, Giresun Tombul is the only cultivar that has received Protected Designation of Origin denomination from the European Comission (EC). However, there is currently no practical objective method to ensure its geographic origin. Therefore, in this study NIR and Raman spectroscopy, along with chemometric methods, such as principal component analysis, PLS-DA (partial least squares-discriminant analysis), and SVM-C (support vector machine-classification), were used to determine the geographical origin of the Giresun Tombul hazelnut cultivar. For this purpose, samples from unique 118 orchards were collected from eight different regions in Turkey during the 2021 and 2022 growing seasons. NIR and Raman spectra were obtained from both the shell and kernel of each sample. The results indicated that hazelnut samples exhibited distinct grouping tendencies based on growing season regardless of the spectroscopic technique and sample type (shell or kernel). Spectral information obtained from hazelnut shells demonstrated higher discriminative power concerning geographical origin compared to that obtained from hazelnut kernels. The PLS-DA models utilizing FT-NIR (Fourier transform near-infrared) and Raman spectra for hazelnut shells achieved validation accuracies of 81.7% and 88.3%, respectively, while SVM-C models yielded accuracies of 90.9% and 86.3%. It was concluded that the lignocellulosic composition of hazelnut shells, indicative of their geographic origin, can be accurately assessed using FT-NIR and Raman spectroscopy, providing a nondestructive, rapid, and user-friendly method for identifying the geographical origin of Giresun Tombul hazelnuts. PRACTICAL APPLICATION: The proposed spectroscopic methods offer a rapid and nondestructive means for hazelnut value chain actors to verify the geographic origin of Giresun Tombul hazelnuts. This could definitely enhance consumer trust by ensuring product authenticity and potentially help in preventing fraud within the hazelnut market. In addition, these methods can also be used as a reference for future studies targeting the authentication of other shelled nuts.


Subject(s)
Corylus , Nuts , Principal Component Analysis , Spectroscopy, Near-Infrared , Spectrum Analysis, Raman , Corylus/chemistry , Spectrum Analysis, Raman/methods , Spectroscopy, Near-Infrared/methods , Discriminant Analysis , Turkey , Nuts/chemistry , Support Vector Machine , Least-Squares Analysis , Chemometrics/methods , Geography
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