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1.
Aging Cell ; 21(10): e13687, 2022 10.
Article in English | MEDLINE | ID: mdl-36073342

ABSTRACT

In humans, associative memories are more susceptible to age-related cognitive decline (ARCD) than are recognition memories. Reduced cAMP/cGMP signaling in the hippocampus may contribute to ARCD. Here, we found that both aging and traumatic brain injury-associated dementia increased the expression of the cAMP/cGMP-degrading enzyme phosphodiesterase 11A (PDE11A) in the human hippocampus. Further, age-related increases in hippocampal PDE11A4 mRNA and protein were conserved in mice, as was the increased vulnerability of associative versus recognition memories to ARCD. Interestingly, mouse PDE11A4 protein in the aged ventral hippocampus (VHIPP) ectopically accumulated in the membrane fraction and filamentous structures we term "ghost axons." These age-related increases in expression were driven by reduced exoribonuclease-mediated degradation of PDE11A mRNA and increased PDE11A4-pS117/pS124, the latter of which also drove the punctate accumulation of PDE11A4. In contrast, PDE11A4-pS162 caused dispersal. Importantly, preventing age-related increases in PDE11 expression via genetic deletion protected mice from ARCD of short-term and remote long-term associative memory (aLTM) in the social transmission of food preference assay, albeit at the expense of recent aLTM. Further, mimicking age-related overexpression of PDE11A4 in CA1 of old KO mice caused aging-like impairments in CREB function and remote social-but not non-social-LTMs. RNA sequencing and phosphoproteomic analyses of VHIPP identified cGMP-PKG-as opposed to cAMP-PKA-as well as circadian entrainment, glutamatergic/cholinergic synapses, calcium signaling, oxytocin, and retrograde endocannabinoid signaling as mechanisms by which PDE11A deletion protects against ARCD. Together, these data suggest that PDE11A4 proteinopathies acutely impair signaling in the aged brain and contribute to ARCD of social memories.


Subject(s)
3',5'-Cyclic-GMP Phosphodiesterases , Cognitive Dysfunction , 3',5'-Cyclic-GMP Phosphodiesterases/genetics , 3',5'-Cyclic-GMP Phosphodiesterases/metabolism , Aged , Animals , Cholinergic Agents/metabolism , Cognitive Dysfunction/metabolism , Endocannabinoids/metabolism , Exoribonucleases/metabolism , Hippocampus/metabolism , Humans , Mice , Oxytocin/metabolism , RNA, Messenger/metabolism
2.
Mol Med Rep ; 26(4)2022 Oct.
Article in English | MEDLINE | ID: mdl-35929507

ABSTRACT

cAMP and cGMP are important secondary messengers involved in cell regulation and metabolism driven by the G protein­coupled receptor. cAMP is converted via adenylyl cyclase (AC) and activates protein kinase A to phosphorylate intracellular proteins that mediate specific responses. cAMP signaling serves a role at multiple steps in tumorigenesis. The level of cAMP is increased in association with cancer cell formation through activation of AC­stimulatory G protein by mutation. Phosphodiesterases (PDEs) hydrolyze cAMP and cGMP to AMP and GMP. PDEs are composed of 11 families, and each can hydrolyze cAMP and cGMP or both cAMP and cGMP. PDEs perform various roles depending on their location and expression site, and are involved in several diseases, including male erectile dysfunction, pulmonary hypertension, Alzheimer's disease and schizophrenia. PDE11A is the 11th member of the PDE family and is characterized by four splice variants with varying tissue expression and N­terminal regulatory regions. Among tissues, the expression of PDE11A was highest in the prostate, and it was also expressed in hepatic skeletal muscle, pituitary, pancreas and kidney. PDE11A is the first PDE associated with an adrenocortical tumor associated genetic condition. In several studies, three PDE11A mutations have been reported in patients with Cushing syndrome with primary pigmented nodular adrenocortical disease or isolated micronodular adrenocortical disease without other genetic defects. It has been reported that an increase in PDE11A expression affects the proliferation of glioblastoma and worsens patient prognosis. The present mini­review summarizes the location of PDE11A expression, the impact of structural differences and disease relevance.


Subject(s)
3',5'-Cyclic-GMP Phosphodiesterases , Phosphoric Diester Hydrolases , 3',5'-Cyclic-GMP Phosphodiesterases/genetics , Cyclic AMP-Dependent Protein Kinases/genetics , Cyclic GMP , Humans , Male , Mutation , Phosphoric Diester Hydrolases/metabolism
3.
Eat Weight Disord ; 27(5): 1869-1880, 2022 Jun.
Article in English | MEDLINE | ID: mdl-34822136

ABSTRACT

PURPOSE: The aim of this study was to increase knowledge of genes associated with anorexia nervosa (AN) and their diagnostic offer, using a next generation sequencing (NGS) panel for the identification of genetic variants. The rationale underlying this test is that we first analyze the genes associated with syndromic forms of AN, then genes that were found to carry rare variants in AN patients who had undergone segregation analysis, and finally candidate genes intervening in the same molecular pathways or identified by GWAS or in mouse models. METHODS: We developed an NGS gene panel and used it to screen 68 Italian AN patients (63 females, 5 males). The panel included 162 genes. Family segregation study was conducted on available relatives of probands who reported significant genetic variants. RESULTS: In our analysis, we found potentially deleterious variants in 2 genes (PDE11A and SLC25A13) associated with syndromic forms of anorexia and predicted deleterious variants in the following 12 genes: CD36, CACNA1C, DRD4, EPHX2, ESR1, GRIN2A, GRIN3B, LRP2, NPY4R, PTGS2, PTPN22 and SGPP2. Furthermore, by Sanger sequencing of the promoter region of NNAT, we confirmed the involvement of this gene in the pathogenesis of AN. Family segregation studies further strengthened the possible causative role of CACNA1C, DRD4, GRIN2A, PTGS2, SGPP2, SLC25A13 and NNAT genes in AN etiology. CONCLUSION: The major finding of our study is the confirmation of the involvement of the NNAT gene in the pathogenesis of AN; furthermore, this study suggests that NGS-based testing can play an important role in the diagnostic evaluation of AN, excluding syndromic forms and increasing knowledge of the genetic etiology of AN. LEVEL OF EVIDENCE: Level I, experimental study.


Subject(s)
Anorexia Nervosa , High-Throughput Nucleotide Sequencing , 3',5'-Cyclic-GMP Phosphodiesterases/genetics , Animals , Anorexia Nervosa/diagnosis , Anorexia Nervosa/genetics , Cyclooxygenase 2/genetics , Female , Humans , Male , Mice , Mitochondrial Membrane Transport Proteins/genetics , Mutation , Protein Tyrosine Phosphatase, Non-Receptor Type 22/genetics
4.
Mol Psychiatry ; 26(12): 7107-7117, 2021 12.
Article in English | MEDLINE | ID: mdl-34321593

ABSTRACT

Although the physical and mental benefits of friendships are clear, the neurobiological mechanisms driving mutual social preferences are not well understood. Studies in humans suggest friends are more genetically similar, particularly for targets within the 3',5'-cyclic adenosine monophosphate (cAMP) cascade. Unfortunately, human studies can not provide conclusive evidence for such a biological driver of friendship given that other genetically related factors tend to co-segregate with friendship (e.g., geographical proximity). As such, here we use mice under controlled conditions to test the hypothesis that homophily in the cAMP-degrading enzyme phosphodiesterase 11A4 (PDE11A4) can dictate mutual social preference. Using C57BL/6J and BALB/cJ mice in two different behavioral assays, we showed that mice with two intact alleles of Pde11a prefer to interact with Pde11 wild-type (WT) mice of the same genetic background over knockout (KO) mice or novel objects; whereas, Pde11 KO mice prefer to interact with Pde11 KO mice over WT mice or novel objects. This mutual social preference was seen in both adult and adolescent mice, and social preference could be eliminated or artificially elicited by strengthening or weakening PDE11A homodimerization, respectively. Stereotactic delivery of an isolated PDE11A GAF-B domain to the mouse hippocampus revealed the membrane-associated pool of PDE11A-cAMP-CREB signaling specifically within the CA1 subfield of hippocampus is most critical for regulating social preference. Our study here not only identifies PDE11A homophily as a key driver of mutual social preference across the lifespan, it offers a paradigm in which other mechanisms can be identified in a controlled fashion.


Subject(s)
3',5'-Cyclic-GMP Phosphodiesterases , Friends , 3',5'-Cyclic-GMP Phosphodiesterases/genetics , Animals , Female , Hippocampus/metabolism , Humans , Male , Mice , Mice, Inbred C57BL , Social Behavior Disorders
5.
Hum Mol Genet ; 30(9): 811-822, 2021 05 28.
Article in English | MEDLINE | ID: mdl-33835157

ABSTRACT

To identify novel risk genes and better understand the molecular pathway underlying Alzheimer's disease (AD), whole-exome sequencing was performed in 215 early-onset AD (EOAD) patients and 255 unrelated healthy controls of Han Chinese ethnicity. Subsequent validation, computational annotation and in vitro functional studies were performed to evaluate the role of candidate variants in EOAD. We identified two rare missense variants in the phosphodiesterase 11A (PDE11A) gene in individuals with EOAD. Both variants are located in evolutionarily highly conserved amino acids, are predicted to alter the protein conformation and are classified as pathogenic. Furthermore, we found significantly decreased protein levels of PDE11A in brain samples of AD patients. Expression of PDE11A variants and knockdown experiments with specific short hairpin RNA (shRNA) for PDE11A both resulted in an increase of AD-associated Tau hyperphosphorylation at multiple epitopes in vitro. PDE11A variants or PDE11A shRNA also caused increased cyclic adenosine monophosphate (cAMP) levels, protein kinase A (PKA) activation and cAMP response element-binding protein phosphorylation. In addition, pretreatment with a PKA inhibitor (H89) suppressed PDE11A variant-induced Tau phosphorylation formation. This study offers insight into the involvement of Tau phosphorylation via the cAMP/PKA pathway in EOAD pathogenesis and provides a potential new target for intervention.


Subject(s)
Alzheimer Disease , 3',5'-Cyclic-GMP Phosphodiesterases/genetics , Alzheimer Disease/genetics , Exome/genetics , Humans , Phosphoric Diester Hydrolases/genetics , Phosphoric Diester Hydrolases/metabolism , Exome Sequencing
6.
J Endocrinol Invest ; 44(10): 2273-2284, 2021 Oct.
Article in English | MEDLINE | ID: mdl-33661511

ABSTRACT

PURPOSE: Testicular germ cell tumours (TGCTs) is the most common malignancy among young adult males. The etiology is multifactorial and both environmental and genetic factors play an important role in the origin and development of TGCT. Genetic susceptibility may result from the interaction of multiple common and low-penetrance genetic variants and one of the main candidate genes is PDE11A. Many PDE11A polymorphisms were found responsible for a reduced PDE activity in TGCT patients, who often also display impaired hormone and sperm profile. The aim of this study was to investigate testicular function and PDE11A sequence in testicular cancer cases. METHODS: Semen analysis was performed in 116 patients with unilateral and bilateral sporadic TGCTs and in 120 cancer-free controls. We also investigated hormone profile and PDE11A polymorphisms using peripheral blood samples. RESULTS: Our data revealed that TGCT patients showed lower testosterone levels, higher gonadotropins levels and worse semen quality than controls, although the mean and the medians of sperm parameters are within the reference limits. PDE11A sequencing detected ten polymorphisms not yet associated with TGCTs before. Among these, G223A in homozygosity and A288G in heterozygosity were significantly associated with a lower risk of testicular tumour and they displayed a positive correlation with total sperm number. CONCLUSIONS: Our findings highlight the key role of PDE11A in testis and suggest the presence of an underlying complex and fine molecular mechanism which controls testis-specific gene expression and susceptibility to testicular cancer.


Subject(s)
3',5'-Cyclic-GMP Phosphodiesterases/genetics , Genetic Predisposition to Disease , Hormones/metabolism , Neoplasms, Germ Cell and Embryonal/pathology , Polymorphism, Single Nucleotide , Spermatozoa/pathology , Testicular Neoplasms/pathology , Case-Control Studies , Follow-Up Studies , Hormones/analysis , Humans , Male , Middle Aged , Neoplasms, Germ Cell and Embryonal/genetics , Neoplasms, Germ Cell and Embryonal/metabolism , Prognosis , Semen Analysis , Spermatozoa/metabolism , Testicular Neoplasms/genetics , Testicular Neoplasms/metabolism
7.
Mol Cell Endocrinol ; 520: 111071, 2021 01 15.
Article in English | MEDLINE | ID: mdl-33127481

ABSTRACT

Phosphodiesterases catalyze the hydrolysis of cyclic nucleotides and maintain physiologic levels of intracellular concentrations of cyclic adenosine and guanosine mono-phosphate (cAMP and cGMP, respectively). Increased cAMP signaling has been associated with adrenocortical tumors and Cushing syndrome. Genetic defects in phosphodiesterase 11A (PDE11A) may lead to increased cAMP signaling and have been found to predispose to the development of adrenocortical, prostate, and testicular tumors. A previously reported Pde11a knockout (Pde11a-/-) mouse line was studied and found to express PDE11A mRNA and protein still, albeit at reduced levels; functional studies in various tissues showed increased cAMP levels and reduced PDE11A activity. Since patients with PDE11A defects and Cushing syndrome have PDE11A haploinsufficiency, it was particularly pertinent to study this hypomorphic mouse line. Indeed, Pde11a-/- mice failed to suppress corticosterone secretion in response to low dose dexamethasone, and in addition exhibited adrenal subcapsular hyperplasia with predominant fetal-like features in the inner adrenal cortex, mimicking other mouse models of increased cAMP signaling in the adrenal cortex. We conclude that a previously reported Pde11a-/- mouse showed continuing expression and function of PDE11A in most tissues. Nevertheless, Pde11a partial inactivation in mice led to an adrenocortical phenotype that was consistent with what we see in patients with PDE11A haploinsufficiency.


Subject(s)
3',5'-Cyclic-GMP Phosphodiesterases/metabolism , Adrenal Cortex/enzymology , Adrenal Cortex/physiology , 3',5'-Cyclic-GMP Phosphodiesterases/genetics , Adrenocorticotropic Hormone/pharmacology , Animals , Corticosterone/pharmacology , Cyclic AMP/metabolism , Cyclic AMP-Dependent Protein Kinases/metabolism , Dexamethasone/pharmacology , Female , Gene Deletion , Hyperplasia , Male , Mice, Knockout , Phenotype , RNA, Messenger/genetics , RNA, Messenger/metabolism
8.
Pathog Dis ; 79(1)2021 01 16.
Article in English | MEDLINE | ID: mdl-33201999

ABSTRACT

Tuberculosis (TB) is the most important infectious disease worldwide, based on the number of new cases and deaths reported by the World Health Organization. Several vaccine candidates against TB have been characterized at preclinical and clinical levels. The BCGΔBCG1419c vaccine candidate, which lacks the BCG1419c gene that encodes for a c-di-GMP phosphodiesterase, provides improved efficacy against chronic TB, reactivation from latent-like infection and against chronic TB in the presence of type 2 diabetes in murine models. We previously reported that compared with wild type BCG, BCGΔBCG1419c changed levels of several proteins. Here, using a label-free proteomic approach, we confirmed that a novel, second-generation version of BCGΔBCG1419c maintains changes in antigenic proteins already reported, and here we further found differences in secreted proteins, as well as that this new BCGΔBCG1419c version modifies its production of proteins involved in redox and nitrogen/protein metabolism compared with wild type BCG. This work contributes to the proteomic characterization of a novel vaccine candidate that is more effective against TB than parental BCG in diverse murine models.


Subject(s)
3',5'-Cyclic-GMP Phosphodiesterases/genetics , BCG Vaccine/genetics , BCG Vaccine/metabolism , Mycobacterium tuberculosis/genetics , Mycobacterium tuberculosis/metabolism , Proteome/metabolism , Proteomics/methods , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biofilms , DNA, Bacterial , Down-Regulation , Humans , Mutation , Oxidation-Reduction , Proteome/genetics , Spectrometry, Mass, Electrospray Ionization , Tuberculosis/prevention & control , Up-Regulation
9.
Mol Vis ; 26: 588-602, 2020.
Article in English | MEDLINE | ID: mdl-32913385

ABSTRACT

Purpose: Achromatopsia is a congenital autosomal recessive cone disorder, and it has been found to be associated with six genes. However, pathogenic variants in these six genes have been identified in patients with various retinal dystrophies with the exception of achromatopsia. Thus, this study aims to investigate the contribution of these genes in hereditary retinal diseases and the potential genotype-phenotype correlations. Methods: Biallelic variants in six achromatopsia-related genes, namely, CNGA3, CNGB3, GNAT2, ATF6, PDE6C, and PDE6H, were analyzed based on data obtained from 7,195 probands with different eye conditions. A systematic genotype-phenotype analysis of these genes was performed based on these data, along with the data reported in the literature. Results: Biallelic potential pathogenic variants (PPVs) in five of the six genes were identified in 119 probands with genetic eye diseases. The variants in CNGA3 were the most common and accounted for 81.5% (97/119). Of the 119 probands, 62.2% (74/119) have cone-rod dystrophy, whereas only 25.2% (30/119) have achromatopsia. No biallelic pathogenic variants in these genes were identified in patients with rod-dominant degeneration. A systematic review of genotypes and phenotypes revealed certain characteristics of each of the six genes, providing clues for the pathogenicity evaluation of the variants of the genes. Conclusions: PPVs in the six genes were identified in various inherited retinal degeneration diseases, most of which are cone-dominant diseases but no rod-dominant diseases based on the data from a cohort of 7,195 probands with different eye conditions. The systematic genotype-phenotype analysis of these genes will be useful in drafting guidelines for the clinical genetic diagnostic application for the investigated genes.


Subject(s)
Color Vision Defects/genetics , Cone-Rod Dystrophies/genetics , 3',5'-Cyclic-GMP Phosphodiesterases/genetics , Activating Transcription Factor 6/genetics , Alleles , Cohort Studies , Color Vision Defects/congenital , Color Vision Defects/pathology , Cyclic Nucleotide Phosphodiesterases, Type 6/genetics , Cyclic Nucleotide-Gated Cation Channels/chemistry , Cyclic Nucleotide-Gated Cation Channels/genetics , DNA Mutational Analysis , Electroretinography , Eye Proteins/genetics , Family , Genetic Association Studies , Genotype , Heterotrimeric GTP-Binding Proteins/genetics , Humans , Mutation , Phenotype , Retinal Cone Photoreceptor Cells/pathology , Exome Sequencing
10.
Biochem Biophys Res Commun ; 532(1): 40-46, 2020 10 29.
Article in English | MEDLINE | ID: mdl-32826058

ABSTRACT

The essential role of cyclic guanosine monophosphate (cGMP) signaling in regulating the oocyte meiotic cell cycle has been established. However, control of the level of cGMP in ovarian follicles is unclear. The cGMP-hydrolyzing phosphodiesterases (PDEs) are important in regulating the cellular cGMP level. We used zebrafish as a model to study the role of a cGMP-hydrolyzing phosphodiesterase-9a (PDE9a) in meiotic maturation of oocytes. Three PDE9a coding genes (PDE9aa, PDE9ab, and PDE9ac) were identified in zebrafish. Both pde9aa and pde9ac are expressed in most adult tissues including the ovary, but pde9ab is only expressed in the ovary, kidney, pituitary, and brain. All three pde9as mRNA exhibited different expression profiles during folliculogenesis. All of them are highly expressed in the oocyte but not in the follicular cell. The expression of both pde9aa and pde9ab, but not pde9ac, in ovarian follicles increases during oocyte maturation either in natural ovulatory cycle or induced by administration of hCG in vivo. We overexpressed pde9aa by injection of capped pde9aa mRNA into the oocytes. The cGMP level was decreased, and oocyte maturation was stimulated. When the activity of PDE9a was blocked by a specific inhibitor, Bay736691, the oocyte maturation was also stimulated. The stimulatory effect could be blocked by a gap junction blocker. However, the spontaneous oocyte maturation of denuded oocytes was not largely affected after treatment with Bay736691. All of the mature oocytes obtained by either treatment of Bay736691 or injection of pde9aa mRNA, could be fertilized in vitro. These results demonstrate the dual roles of PDE9a in oocyte maturation. The basal level of PDE9a is responsible for maintaining the meiotic arrest, and the increased level of PDE9a induced by LH signaling is helpful for stimulating meiotic maturation by hydrolyzing cGMP in oocytes.


Subject(s)
3',5'-Cyclic-GMP Phosphodiesterases/metabolism , Oocytes/metabolism , Zebrafish Proteins/metabolism , Zebrafish/physiology , 3',5'-Cyclic-GMP Phosphodiesterases/chemistry , 3',5'-Cyclic-GMP Phosphodiesterases/genetics , Animals , Female , Meiosis/drug effects , Meiosis/genetics , Meiosis/physiology , Models, Molecular , Oocytes/drug effects , Oocytes/growth & development , Oogenesis/drug effects , Oogenesis/genetics , Oogenesis/physiology , Phosphodiesterase Inhibitors/pharmacology , Phylogeny , Protein Structure, Tertiary , Pyrazoles/pharmacology , Pyrimidines/pharmacology , RNA, Messenger/genetics , RNA, Messenger/metabolism , Zebrafish/genetics , Zebrafish/growth & development , Zebrafish Proteins/chemistry , Zebrafish Proteins/genetics
11.
J Gen Appl Microbiol ; 66(2): 147-152, 2020 Jun 17.
Article in English | MEDLINE | ID: mdl-32224605

ABSTRACT

Second messenger molecules are crucial components of environmental signaling systems to integrate multiple inputs and elicit physiological responses. Among various kinds of second messengers, cyclic nucleotides cAMP and cyclic di-GMP (c-di-GMP) play pivotal roles in bacterial environmental responses. However, how these signaling systems are interconnected for a concerted regulation of cellular physiology remains elusive. In a thermophilic cyanobacterium Thermosynechococcus vulcanus strain RKN, incident light color is sensed by cyanobacteriochrome photoreceptors to transduce the light information to the levels of c-di-GMP, which induces cellular aggregation probably via cellulose synthase activation. Herein, we identified that Tlr0485, which is composed of a cGMP-specific phosphodiesterases, adenylate cyclases, and FhlA (GAF) domain and an HD-GYP domain, is a cAMP-activated c-di-GMP phosphodiesterase. We also show biochemical evidence that the two class-III nucleotide cyclases, Cya1 and Cya2, are both adenylate cyclases to produce cAMP in T. vulcanus. The prevalence of cAMP-activated c-di-GMP phosphodiesterase genes in cyanobacterial genomes suggests that the direct crosstalk between cAMP and c-di-GMP signaling systems may be crucial for cyanobacterial environmental responses.


Subject(s)
3',5'-Cyclic-GMP Phosphodiesterases/metabolism , Bacterial Proteins/metabolism , Cyclic AMP/metabolism , Cyclic GMP/analogs & derivatives , Second Messenger Systems , 3',5'-Cyclic-GMP Phosphodiesterases/genetics , Adenylyl Cyclases/genetics , Adenylyl Cyclases/metabolism , Bacterial Proteins/genetics , Chromatography, High Pressure Liquid , Cyclic GMP/metabolism , Electrophoresis, Polyacrylamide Gel , Mutation , Protein Domains , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Signal Transduction , Thermosynechococcus/enzymology , Thermosynechococcus/genetics
12.
Appl Microbiol Biotechnol ; 104(6): 2715-2729, 2020 Mar.
Article in English | MEDLINE | ID: mdl-32002604

ABSTRACT

Establishment of the rhizobia-legume symbiosis is usually accompanied by hydrogen peroxide (H2O2) production by the legume host at the site of infection, a process detrimental to rhizobia. In Azorhizobium caulinodans ORS571, deletion of chp1, a gene encoding c-di-GMP phosphodiesterase, led to increased resistance against H2O2 and to elevated nodulation efficiency on its legume host Sesbania rostrata. Three domains were identified in the Chp1: a PAS domain, a degenerate GGDEF domain, and an EAL domain. An in vitro enzymatic activity assay showed that the degenerate GGDEF domain of Chp1 did not have diguanylate cyclase activity. The phosphodiesterase activity of Chp1 was attributed to its EAL domain which could hydrolyse c-di-GMP into pGpG. The PAS domain functioned as a regulatory domain by sensing oxygen. Deletion of Chp1 resulted in increased intracellular c-di-GMP level, decreased motility, increased aggregation, and increased EPS (extracellular polysaccharide) production. H2O2-sensitivity assay showed that increased EPS production could provide ORS571 with resistance against H2O2. Thus, the elevated nodulation efficiency of the ∆chp1 mutant could be correlated with a protective role of EPS in the nodulation process. These data suggest that c-di-GMP may modulate the A. caulinodans-S. rostrata nodulation process by regulating the production of EPS which could protect rhizobia against H2O2.


Subject(s)
3',5'-Cyclic-GMP Phosphodiesterases/metabolism , Azorhizobium caulinodans/enzymology , Bacterial Proteins/metabolism , Plant Root Nodulation , Polysaccharides, Bacterial/biosynthesis , Symbiosis , 3',5'-Cyclic-GMP Phosphodiesterases/genetics , Azorhizobium caulinodans/drug effects , Bacterial Proteins/genetics , Gene Deletion , Host Microbial Interactions , Hydrogen Peroxide/pharmacology , Movement , Sesbania/microbiology
13.
Nat Commun ; 10(1): 5358, 2019 11 25.
Article in English | MEDLINE | ID: mdl-31767877

ABSTRACT

Biofilm formation protects bacteria from stresses including antibiotics and host immune responses. Carbon sources can modulate biofilm formation and host colonization in Vibrio cholerae, but the underlying mechanisms remain unclear. Here, we show that EIIAGlc, a component of the phosphoenolpyruvate (PEP):carbohydrate phosphotransferase system (PTS), regulates the intracellular concentration of the cyclic dinucleotide c-di-GMP, and thus biofilm formation. The availability of preferred sugars such as glucose affects EIIAGlc phosphorylation state, which in turn modulates the interaction of EIIAGlc with a c-di-GMP phosphodiesterase (hereafter referred to as PdeS). In a Drosophila model of V. cholerae infection, sugars in the host diet regulate gut colonization in a manner dependent on the PdeS-EIIAGlc interaction. Our results shed light into the mechanisms by which some nutrients regulate biofilm formation and host colonization.


Subject(s)
3',5'-Cyclic-GMP Phosphodiesterases/metabolism , Bacterial Proteins/metabolism , Cyclic GMP/analogs & derivatives , Sugars/metabolism , Vibrio cholerae/enzymology , 3',5'-Cyclic-GMP Phosphodiesterases/genetics , Bacterial Proteins/genetics , Biofilms/growth & development , Cyclic GMP/metabolism , Gene Expression Regulation, Bacterial , Glucose/metabolism , Phosphoenolpyruvate Sugar Phosphotransferase System/genetics , Phosphoenolpyruvate Sugar Phosphotransferase System/metabolism , Vibrio cholerae/genetics , Vibrio cholerae/physiology
14.
Curr Biol ; 29(14): 2307-2321.e5, 2019 07 22.
Article in English | MEDLINE | ID: mdl-31303492

ABSTRACT

Systems consolidation is a process by which memories initially require the hippocampus for recent long-term memory (LTM) but then become increasingly independent of the hippocampus and more dependent on the cortex for remote LTM. Here, we study the role of phosphodiesterase 11A4 (PDE11A4) in systems consolidation. PDE11A4, which degrades cyclic adenosine monophosphate (cAMP) and cyclic guanosine monophosphate (cGMP), is preferentially expressed in neurons of CA1, the subiculum, and the adjacently connected amygdalohippocampal region. In male and female mice, deletion of PDE11A enhances remote LTM for social odor recognition and social transmission of food preference (STFP) despite eliminating or silencing recent LTM for those same social events. Measurement of a surrogate marker of neuronal activation (i.e., Arc mRNA) suggests the recent LTM deficits observed in Pde11 knockout mice correspond with decreased activation of ventral CA1 relative to wild-type littermates. In contrast, the enhanced remote LTM observed in Pde11a knockout mice corresponds with increased activation and altered functional connectivity of anterior cingulate cortex, frontal association cortex, parasubiculum, and the superficial layer of medial entorhinal cortex. The apparent increased neural activation observed in prefrontal cortex of Pde11a knockout mice during remote LTM retrieval may be related to an upregulation of the N-methyl-D-aspartate receptor subunits NR1 and NR2A. Viral restoration of PDE11A4 to vCA1 alone is sufficient to rescue both the LTM phenotypes and upregulation of NR1 exhibited by Pde11a knockout mice. Together, our findings suggest remote LTM can be decoupled from recent LTM, which may have relevance for cognitive deficits associated with aging, temporal lobe epilepsy, or transient global amnesia.


Subject(s)
3',5'-Cyclic-GMP Phosphodiesterases/genetics , Hippocampus/physiology , Memory Disorders/physiopathology , Memory, Long-Term/physiology , Neurons/metabolism , 3',5'-Cyclic-GMP Phosphodiesterases/metabolism , Animals , Female , Male , Mice , Mice, Knockout
15.
Am J Respir Cell Mol Biol ; 60(5): 523-531, 2019 05.
Article in English | MEDLINE | ID: mdl-30694715

ABSTRACT

DlCO is a widely used pulmonary function test in clinical practice and a particularly useful measure for assessing patients with chronic obstructive pulmonary disease (COPD). We hypothesized that elucidating genetic determinants of DlCO could lead to better understanding of the genetic architecture of COPD. We estimated the heritability of DlCO using common genetic variants and performed genome-wide association analyses in four cohorts enriched for subjects with COPD (COPDGene [Genetic Epidemiology of COPD], NETT [National Emphysema Treatment Trial], GenKOLS [Genetics of Chronic Obstructive Lung Disease study], and TESRA [Treatment of Emphysema With a Gamma-Selective Retinoid Agonist study]) using a combined European ancestry white dataset and a COPDGene African American dataset. We assessed our genome-wide significant and suggestive associations for DlCO in previously reported genome-wide association studies of COPD and related traits. We also characterized associations of known COPD-associated variants and DlCO. We estimated the SNP-based heritability of DlCO in the European ancestry white population to be 22% (P = 0.0004). We identified three genome-wide significant associations with DlCO: variants near TGFB2, CHRNA3, and PDE11A loci (P < 5 × 10-8). In addition, 12 loci were suggestively associated with DlCO in European ancestry white (P < 1 × 10-5 in the combined analysis and P < 0.05 in both COPDGene and GenKOLS), including variants near NEGR1, CADM2, PCDH7, RETREG1, DACT2, NRG1, ANKRD18A, KRT86, NTN4, ARHGAP28, INSR, and PCBP3. Some DlCO-associated variants were also associated with COPD, emphysema, and/or spirometric values. Among 25 previously reported COPD loci, TGFB2, CHRNA3/CHRNA5, FAM13A, DSP, and CYP2A6 were associated with DlCO (P < 0.001). We identified several genetic loci that were significantly associated with DlCO and characterized effects of known COPD-associated loci on DlCO. These results could lead to better understanding of the heterogeneous nature of COPD.


Subject(s)
3',5'-Cyclic-GMP Phosphodiesterases/genetics , Genetic Loci , Genetic Predisposition to Disease , Pulmonary Disease, Chronic Obstructive/genetics , Pulmonary Emphysema/genetics , Receptors, Nicotinic/genetics , Transforming Growth Factor beta2/genetics , 3',5'-Cyclic-GMP Phosphodiesterases/metabolism , Adult , Black People , Cytochrome P-450 CYP2A6/genetics , Cytochrome P-450 CYP2A6/metabolism , Desmoplakins/genetics , Desmoplakins/metabolism , Female , GTPase-Activating Proteins/genetics , GTPase-Activating Proteins/metabolism , Gene Expression , Genome, Human , Genome-Wide Association Study , Humans , Lung/metabolism , Lung/physiopathology , Male , Middle Aged , Polymorphism, Single Nucleotide , Pulmonary Disease, Chronic Obstructive/ethnology , Pulmonary Disease, Chronic Obstructive/metabolism , Pulmonary Disease, Chronic Obstructive/physiopathology , Pulmonary Emphysema/ethnology , Pulmonary Emphysema/metabolism , Pulmonary Emphysema/physiopathology , Receptors, Nicotinic/metabolism , Respiratory Function Tests , Spirometry , Transforming Growth Factor beta2/metabolism , White People
16.
Res Microbiol ; 169(4-5): 205-213, 2018.
Article in English | MEDLINE | ID: mdl-29859892

ABSTRACT

Bis-(3'→5') cyclic dimeric guanosine monophosphate (c-di-GMP) is defined as a highly versatile secondary messenger in bacteria, coordinating diverse aspects of bacterial growth and behavior, including motility and biofilm formation. Bacillus amyloliquefaciens PG12 is an effective biocontrol agent against apple ring rot caused by Botryosphaeria dothidea. In this study, we characterized the core regulators of c-di-GMP turnover in B. amyloliquefaciens PG12. Using bioinformatic analysis, heterologous expression and biochemical characterization of knockout and overexpression derivatives, we identified and characterized two active diguanylate cyclases (which catalyze c-di-GMP biosynthesis), YhcK and YtrP and one active c-di-GMP phosphodiesterase (which degrades c-di-GMP), YuxH. Furthermore, we showed that elevating c-di-GMP levels up to a certain threshold inhibited the swimming motility of B. amyloliquefaciens PG12. Although yhcK, ytrP and yuxH knockout mutants did not display defects in biofilm formation, significant increases in c-di-GMP levels induced by YtrP or YuxH overexpression stimulated biofilm formation in B. amyloliquefaciens PG12. Our results indicate that B. amyloliquefaciens possesses a functional c-di-GMP signaling system that influences the bacterium's motility and ability to form biofilms. Since motility and biofilm formation influence the efficacy of biological control agent, our work provides a basis for engineering a more effective strain of B. amyloliquefaciens PG12.


Subject(s)
3',5'-Cyclic-GMP Phosphodiesterases/genetics , Bacillus amyloliquefaciens/metabolism , Cyclic GMP/analogs & derivatives , Escherichia coli Proteins/genetics , Gene Expression Regulation, Bacterial/genetics , Phosphorus-Oxygen Lyases/genetics , 3',5'-Cyclic-GMP Phosphodiesterases/metabolism , Bacillus amyloliquefaciens/genetics , Biofilms/growth & development , Biological Control Agents , Cyclic GMP/metabolism , Escherichia coli Proteins/metabolism , Gene Knockout Techniques , Movement , Phosphorus-Oxygen Lyases/metabolism , Signal Transduction/genetics
17.
Sci Rep ; 8(1): 6809, 2018 05 01.
Article in English | MEDLINE | ID: mdl-29717160

ABSTRACT

The spinal dorsal horn (SDH) is comprised of distinct neuronal populations that process different somatosensory modalities. Somatostatin (SST)-expressing interneurons in the SDH have been implicated specifically in mediating mechanical pain. Identifying the transcriptomic profile of SST neurons could elucidate the unique genetic features of this population and enable selective analgesic targeting. To that end, we combined the Isolation of Nuclei Tagged in Specific Cell Types (INTACT) method and Fluorescence Activated Nuclei Sorting (FANS) to capture tagged SST nuclei in the SDH of adult male mice. Using RNA-sequencing (RNA-seq), we uncovered more than 13,000 genes. Differential gene expression analysis revealed more than 900 genes with at least 2-fold enrichment. In addition to many known dorsal horn genes, we identified and validated several novel transcripts from pharmacologically tractable functional classes: Carbonic Anhydrase 12 (Car12), Phosphodiesterase 11 A (Pde11a), and Protease-Activated Receptor 3 (F2rl2). In situ hybridization of these novel genes showed differential expression patterns in the SDH, demonstrating the presence of transcriptionally distinct subpopulations within the SST population. Overall, our findings provide new insights into the gene repertoire of SST dorsal horn neurons and reveal several novel targets for pharmacological modulation of this pain-mediating population and treatment of pathological pain.


Subject(s)
Interneurons/metabolism , Nerve Tissue Proteins/genetics , RNA, Messenger/genetics , Somatostatin/genetics , Spinal Cord Dorsal Horn/metabolism , Transcription, Genetic , 3',5'-Cyclic-GMP Phosphodiesterases/genetics , 3',5'-Cyclic-GMP Phosphodiesterases/metabolism , Animals , Carbonic Anhydrases/genetics , Carbonic Anhydrases/metabolism , Cell Nucleus/metabolism , Cell Nucleus/ultrastructure , Gene Expression Profiling , Genes, Reporter , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Interneurons/ultrastructure , Male , Mice , Mice, Inbred C57BL , Mice, Transgenic , Nerve Tissue Proteins/classification , Nerve Tissue Proteins/metabolism , Nociceptive Pain/genetics , Nociceptive Pain/metabolism , Nociceptive Pain/physiopathology , Posterior Horn Cells/metabolism , Posterior Horn Cells/ultrastructure , RNA, Messenger/classification , RNA, Messenger/metabolism , Receptors, Thrombin/genetics , Receptors, Thrombin/metabolism , Somatostatin/metabolism , Spinal Cord Dorsal Horn/cytology
18.
EMBO J ; 36(21): 3250-3267, 2017 11 02.
Article in English | MEDLINE | ID: mdl-29030485

ABSTRACT

Toxoplasma gondii encodes three protein kinase A catalytic (PKAc1-3) and one regulatory (PKAr) subunits to integrate cAMP-dependent signals. Here, we show that inactive PKAc1 is maintained at the parasite pellicle by interacting with acylated PKAr. Either a conditional knockdown of PKAr or the overexpression of PKAc1 blocks parasite division. Conversely, down-regulation of PKAc1 or stabilisation of a dominant-negative PKAr isoform that does not bind cAMP triggers premature parasite egress from infected cells followed by serial invasion attempts leading to host cell lysis. This untimely egress depends on host cell acidification. A phosphoproteome analysis suggested the interplay between cAMP and cGMP signalling as PKAc1 inactivation changes the phosphorylation profile of a putative cGMP-phosphodiesterase. Concordantly, inhibition of the cGMP-dependent protein kinase G (PKG) blocks egress induced by PKAc1 inactivation or environmental acidification, while a cGMP-phosphodiesterase inhibitor circumvents egress repression by PKAc1 or pH neutralisation. This indicates that pH and PKAc1 act as balancing regulators of cGMP metabolism to control egress. These results reveal a crosstalk between PKA and PKG pathways to govern egress in T. gondii.


Subject(s)
3',5'-Cyclic-GMP Phosphodiesterases/genetics , Cyclic AMP-Dependent Protein Kinase Catalytic Subunits/genetics , Cyclic AMP-Dependent Protein Kinase RIalpha Subunit/genetics , Cyclic GMP-Dependent Protein Kinases/genetics , Host-Parasite Interactions , Protozoan Proteins/genetics , Toxoplasma/genetics , 3',5'-Cyclic-GMP Phosphodiesterases/metabolism , Acylation , Cell Line, Transformed , Cyclic AMP/metabolism , Cyclic AMP-Dependent Protein Kinase Catalytic Subunits/metabolism , Cyclic AMP-Dependent Protein Kinase RIalpha Subunit/metabolism , Cyclic GMP/metabolism , Cyclic GMP-Dependent Protein Kinases/metabolism , Fibroblasts/parasitology , Gene Expression Regulation , Humans , Hydrogen-Ion Concentration , Life Cycle Stages/genetics , Phosphoproteins/genetics , Phosphoproteins/metabolism , Phosphorylation , Protozoan Proteins/metabolism , Signal Transduction , Toxoplasma/growth & development , Toxoplasma/metabolism
19.
Methods Mol Biol ; 1657: 23-29, 2017.
Article in English | MEDLINE | ID: mdl-28889283

ABSTRACT

Diguanylate cyclases that synthesize and phosphodiesterases that hydrolyze the second messenger cyclic-di-GMP (c-di-GMP) are at the center of bacterial signaling pathways that control behaviors relevant to all aspects of microbial physiology and pathogenesis (Romling et al., Microbiol Mol Biol Rev 77(1):1-52, 2013). Bioinformatics tools can easily predict the presence of the diguanylate cyclase GGDEF domain, or the EAL and HD-GYP domains associated with phosphodiesterase activity. However, experimental confirmation of enzymatic activity is still necessary, as many proteins contain degenerate domains that lack catalytic activity but nonetheless function as c-di-GMP receptors.


Subject(s)
3',5'-Cyclic-GMP Phosphodiesterases/metabolism , Cyclic GMP/analogs & derivatives , Escherichia coli Proteins/metabolism , Phosphorus Radioisotopes , Phosphorus-Oxygen Lyases/metabolism , 3',5'-Cyclic-GMP Phosphodiesterases/genetics , 3',5'-Cyclic-GMP Phosphodiesterases/isolation & purification , Bacteria/genetics , Bacteria/metabolism , Cyclic GMP/chemical synthesis , Enzyme Activation , Escherichia coli Proteins/genetics , Escherichia coli Proteins/isolation & purification , Gene Expression , Phosphorus Radioisotopes/chemistry , Phosphorus-Oxygen Lyases/genetics , Phosphorus-Oxygen Lyases/isolation & purification , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism
20.
Adv Neurobiol ; 17: 201-230, 2017.
Article in English | MEDLINE | ID: mdl-28956334

ABSTRACT

The most recently discovered 3',5'-cyclic nucleotide phosphodiesterase family is the Phosphodiesterase 11 (PDE11) family, which is encoded by a single gene PDE11A. PDE11A is a dual-specific PDE, breaking down both cAMP and cGMP. There are four PDE11A splice variants (PDE11A1-4) with distinct tissue expression profiles and unique N-terminal regulatory regions, suggesting that each isoform could be individually targeted with a small molecule or biologic. PDE11A4 is the PDE11A isoform expressed in brain and is found in the hippocampal formation of humans and rodents. Studies in rodents show that PDE11A4 mRNA expression in brain is, in fact, restricted to the hippocampal formation (CA1, possibly CA2, subiculum, and the adjacently connected amygdalohippocampal area). Within the hippocampal formation of rodents, PDE11A4 protein is expressed in neurons but not astrocytes, with a distribution across nuclear, cytoplasmic, and membrane compartments. This subcellular localization of PDE11A4 is altered in response to social experience in mouse, and in vitro studies show the compartmentalization of PDE11A4 is controlled, at least in part, by homodimerization and N-terminal phosphorylation. PDE11A4 expression dramatically increases in the hippocampus with age in the rodent hippocampus, from early postnatal life to late aging, suggesting PDE11A4 function may evolve across the lifespan. Interestingly, PDE11A4 protein shows a three to tenfold enrichment in the rodent ventral hippocampal formation (VHIPP; a.k.a. anterior in primates) versus dorsal hippocampal formation (DHIPP). Consistent with this enrichment in VHIPP, studies in knockout mice show that PDE11A regulates the formation of social memories and the stabilization of mood and is a critical mechanism by which social experience feeds back to modify the brain and subsequent social behaviors. PDE11A4 likely controls behavior by regulating hippocampal glutamatergic, oxytocin, and cytokine signaling, as well as protein translation. Given its unique tissue distribution and relatively selective effects on behavior, PDE11A may represent a novel therapeutic target for neuropsychiatric, neurodevelopmental, or age-related disorders. Therapeutically targeting PDE11A4 may be a way to selectively restore aberrant cyclic nucleotide signaling in the hippocampal formation while leaving the rest of the brain and periphery untouched, thus, relieving deficits while avoiding unwanted side effects.


Subject(s)
Affect , Brain/metabolism , Memory , Neurons/metabolism , Phosphoric Diester Hydrolases/metabolism , Social Behavior , 3',5'-Cyclic-GMP Phosphodiesterases/genetics , 3',5'-Cyclic-GMP Phosphodiesterases/metabolism , Animals , Hippocampus/metabolism , Humans , Mice, Knockout , Protein Isoforms , RNA, Messenger/metabolism
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