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1.
J Environ Sci (China) ; 147: 414-423, 2025 Jan.
Article in English | MEDLINE | ID: mdl-39003059

ABSTRACT

The anaerobic acid production experiments were conducted with the pretreated kitchen waste under pH adjustment. The results showed that pH 8 was considered to be the most suitable condition for acid production, especially for the formation of acetic acid and propionic acid. The average value of total volatile fatty acid at pH 8 was 8814 mg COD/L, 1.5 times of that under blank condition. The average yield of acetic acid and propionic acid was 3302 mg COD/L and 2891 mg COD/L, respectively. The activities of key functional enzymes such as phosphotransacetylase, acetokinase, oxaloacetate transcarboxylase and succinyl-coA transferase were all enhanced. To further explore the regulatory mechanisms within the system, the distribution of microorganisms at different levels in the fermentation system was obtained by microbial sequencing, results indicating that the relative abundances of Clostridiales, Bacteroidales, Chloroflexi, Clostridium, Bacteroidetes and Propionibacteriales, which were great contributors for the hydrolysis and acidification, increased rapidly at pH 8 compared with the blank group. Besides, the proportion of genes encoding key enzymes was generally increased, which further verified the mechanism of hydrolytic acidification and acetic acid production of organic matter under pH regulation.


Subject(s)
Fatty Acids, Volatile , Hydrogen-Ion Concentration , Fatty Acids, Volatile/metabolism , Fermentation , Acetic Acid/metabolism , Bioreactors
2.
Sci Total Environ ; 946: 174410, 2024 Oct 10.
Article in English | MEDLINE | ID: mdl-38960157

ABSTRACT

Methane is a renewable biomass energy source produced via anaerobic digestion (AD). Interspecies electron transfer (IET) between methanogens and syntrophic bacteria is crucial for mitigating energy barriers in this process. Understanding IET is essential for enhancing the efficiency of syntrophic methanogenesis in anaerobic digestion. Interspecies electron transfer mechanisms include interspecies H2/formate transfer, direct interspecies electron transfer (DIET), and electron-shuttle-mediated transfer. This review summarizes the mechanisms, developments, and research gaps in IET pathways. Interspecies H2/formate transfer requires strict control of low H2 partial pressure and involves complex enzymatic reactions. In contrast, DIET enhances the electron transfer efficiency and process stability. Conductive materials and key microorganisms can be modulated to stimulate the DIET. Electron shuttles (ES) allow microorganisms to interact with extracellular electron acceptors without direct contact; however, their efficiency depends on various factors. Future studies should elucidate the key functional groups, metabolic pathways, and regulatory mechanisms of IET to guide the optimization of AD processes for efficient renewable energy production.


Subject(s)
Fatty Acids, Volatile , Methane , Methane/metabolism , Electron Transport , Fatty Acids, Volatile/metabolism , Anaerobiosis , Bacteria/metabolism
3.
Anim Sci J ; 95(1): e13983, 2024.
Article in English | MEDLINE | ID: mdl-39053951

ABSTRACT

This study aimed to clarify the efficacy of cashew nutshell liquid (CNSL) in methane emissions, milk production, and rumen fermentation of lactating cows in practical conditions. Ten Holstein lactating cows were used in a free-stall barn with a milking robot. Two treatments were arranged as control (no CNSL additive, n = 5) or CNSL addition (10 g/day of CNSL, n = 5) for 21 days after the 7-day preliminary period. A sniffer method was applied to predict daily methane production and methane conversion factor (MCF). In vitro, rumen gas production was also tested using the rumen fluid of individual cows. Daily dry matter intake (DMI), eating time, milk production, and methane production were not affected by the CNSL addition. However, methane production per DMI and MCF were lower (p ≤ 0.01) for the CNSL cows than those for the control cows. Ruminal total volatile fatty acid (VFA) concentration and acetate proportion tended to be lower (p < 0.15) for CNSL cows. A tendency to decrease (p < 0.10) in methane was also observed in the in vitro incubation with the rumen fluid obtained from the CNSL cows compared with those from the control cows. These results suggest that adding CNSL to diets could reduce the methane yield of cows in practical conditions.


Subject(s)
Anacardium , Fermentation , Lactation , Methane , Milk , Rumen , Animals , Cattle/metabolism , Methane/metabolism , Methane/analysis , Female , Rumen/metabolism , Milk/chemistry , Milk/metabolism , Fatty Acids, Volatile/metabolism , Fatty Acids, Volatile/analysis , Diet/veterinary , Animal Feed , Dairying , Animal Nutritional Physiological Phenomena/physiology , Acetates
4.
Nutrients ; 16(13)2024 Jun 27.
Article in English | MEDLINE | ID: mdl-38999794

ABSTRACT

Enterohemorrhagic Escherichia coli (EHEC) is a major food-borne pathogen that causes human disease ranging from diarrhea to life-threatening complications. Accumulating evidence demonstrates that the Western diet enhances the susceptibility to enteric infection in mice, but the effect of diet on EHEC colonization and the role of human gut microbiota remains unknown. Our research aimed to investigate the effects of a Standard versus a Western diet on EHEC colonization in the human in vitro Mucosal ARtificial COLon (M-ARCOL) and the associated changes in the gut microbiota composition and activities. After donor selection using simplified fecal batch experiments, two M-ARCOL bioreactors were inoculated with a human fecal sample (n = 4) and were run in parallel, one receiving a Standard diet, the other a Western diet and infected with EHEC O157:H7 strain EDL933. EHEC colonization was dependent on the donor and diet in the luminal samples, but was maintained in the mucosal compartment without elimination, suggesting a favorable niche for the pathogen, and may act as a reservoir. The Western diet also impacted the bacterial short-chain fatty acid and bile acid profiles, with a possible link between high butyrate concentrations and prolonged EHEC colonization. The work demonstrates the application of a complex in vitro model to provide insights into diet, microbiota, and pathogen interactions in the human gut.


Subject(s)
Colon , Diet, Western , Enterohemorrhagic Escherichia coli , Feces , Gastrointestinal Microbiome , Humans , Gastrointestinal Microbiome/physiology , Diet, Western/adverse effects , Colon/microbiology , Feces/microbiology , Escherichia coli Infections/microbiology , Intestinal Mucosa/microbiology , Intestinal Mucosa/metabolism , Fatty Acids, Volatile/metabolism , Bile Acids and Salts/metabolism , Escherichia coli O157
5.
Nutrients ; 16(13)2024 Jul 04.
Article in English | MEDLINE | ID: mdl-38999878

ABSTRACT

Resveratrol, acting as a prebiotic, and propionate, functioning as a postbiotic, hold promise for preventing hypertension in chronic kidney disease (CKD). Previously, we employed propionate to enhance the bioavailability of resveratrol through esterification, resulting in the production of a resveratrol propionate ester (RPE) mixture. In this study, we purified 3-O-propanoylresveratrol (RPE2) and 3,4'-di-O-propanoylresveratrol (RPE4) and investigated their protective effects in a juvenile rat adenine-induced CKD model. To this end, male Sprague Dawley rats aged three weeks (n = 40) were divided into five groups: control; CKD (rats fed adenine); CKRSV (CKD rats treated with 50 mg/L resveratrol); CDRPE2 (CKD rats treated with 25 mg/L RPE2); and CKRPE4 (CKD rats treated with 25 mg/L RPE 4). RPE2 and PRE4 similarly exhibited blood pressure-lowering effects comparable to those of resveratrol, along with increased nitric oxide (NO) availability. Furthermore, RPE2 and RPE4 positively influenced plasma short-chain fatty acid (SCFA) levels and induced distinct alterations in the gut microbial composition of adenine-fed juvenile rats. The supplementation of RPE2 and RPE4, by restoring NO, elevating SCFAs, and modulating the gut microbiota, holds potential for ameliorating CKD-induced hypertension.


Subject(s)
Adenine , Antihypertensive Agents , Blood Pressure , Dietary Supplements , Gastrointestinal Microbiome , Hypertension , Rats, Sprague-Dawley , Renal Insufficiency, Chronic , Resveratrol , Animals , Gastrointestinal Microbiome/drug effects , Resveratrol/pharmacology , Male , Adenine/pharmacology , Antihypertensive Agents/pharmacology , Blood Pressure/drug effects , Rats , Hypertension/drug therapy , Propionates , Nitric Oxide/metabolism , Fatty Acids, Volatile/metabolism , Disease Models, Animal , Diet
6.
Br Poult Sci ; 65(4): 465-477, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38994755

ABSTRACT

1. A stimbiotic (STB) is any feed additive that stimulates caeca fibre fermentation, although the additive itself contributes little to the caeca short-chain fatty acid (SCFA) production. A 42 d experiment investigated the interactive effects of STB and wheat bran (WB) in broiler chickens receiving maize or wheat-based diets.2. The treatments were arranged in a 2 × 2 × 2 factorial (eight replicates each), the dietary factors being diet (maize-SBM or wheat-SBM), STB (with or without) and WB (0 or 50 g/kg). Jejunal tissue, gizzard, jejunal and ileal digesta and caecal contents were collected on d 18 and 42.3. Gizzard pH tended to decrease with STB (p = 0.06) supplementation and was lower in birds fed wheat- compared to maize-based diets on d 18 (p < 0.05). Birds receiving diets with WB had higher jejunum pH on d 18 (p < 0.05).4. Total short-chain fatty acids (SCFA) in the caeca on d 18 and isobutyrate on d 42 were higher (p < 0.05) for maize compared with wheat-based diets. However, on d 42, acetate, butyrate and total SCFA were higher (p < 0.05) for wheat-based compared with maize-based diets.5. On d 18, STB and WB inclusion increased villi height (VH; p < 0.05) and VH to crypt depth ratio (VH/CD), respectively (p < 0.05). On d 42, VH (p < 0.05) and VH/CD were higher in wheat-based diets (p < 0.05). The VH/CD ratio was lower with STB supplementation (p < 0.05). Marker-corrected pentose oligosaccharides (Pent)4 and (Pent)5 concentrations in the ileal digesta were reduced (p < 0.05) with STB supplementation. In addition, STB decreased (Pent)3 concentration in maize-, but not wheat-based diets (p < 0.05).6. In conclusion, both WB and STB influenced gastrointestinal pH and jejunum histomorphology of broilers without increasing oligosaccharide concentration in the ileum and SCFA in the caeca.


Subject(s)
Animal Feed , Animal Nutritional Physiological Phenomena , Cecum , Chickens , Diet , Dietary Fiber , Fatty Acids, Volatile , Jejunum , Oligosaccharides , Triticum , Zea mays , Animals , Chickens/physiology , Chickens/growth & development , Animal Feed/analysis , Fatty Acids, Volatile/metabolism , Zea mays/chemistry , Triticum/chemistry , Diet/veterinary , Jejunum/anatomy & histology , Dietary Fiber/metabolism , Dietary Fiber/analysis , Dietary Fiber/administration & dosage , Oligosaccharides/administration & dosage , Dietary Supplements/analysis , Male , Random Allocation
7.
Nat Commun ; 15(1): 6012, 2024 Jul 22.
Article in English | MEDLINE | ID: mdl-39039075

ABSTRACT

Gut microbiomes are widely hypothesised to influence host fitness and have been experimentally shown to affect host health and phenotypes under laboratory conditions. However, the extent to which they do so in free-living animal populations and the proximate mechanisms involved remain open questions. In this study, using long-term, individual-based life history and shallow shotgun metagenomic sequencing data (2394 fecal samples from 794 individuals collected between 2013-2019), we quantify relationships between gut microbiome variation and survival in a feral population of horses under natural food limitation (Sable Island, Canada), and test metagenome-derived predictions using short-chain fatty acid data. We report detailed evidence that variation in the gut microbiome is associated with a host fitness proxy in nature and outline hypotheses of pathogenesis and methanogenesis as key causal mechanisms which may underlie such patterns in feral horses, and perhaps, wild herbivores more generally.


Subject(s)
Feces , Gastrointestinal Microbiome , Methane , Animals , Horses/microbiology , Gastrointestinal Microbiome/genetics , Feces/microbiology , Methane/metabolism , Animals, Wild/microbiology , Metagenome , Fatty Acids, Volatile/metabolism , Metagenomics/methods , Male , Female , Canada
8.
Int J Mol Sci ; 25(13)2024 Jun 26.
Article in English | MEDLINE | ID: mdl-39000076

ABSTRACT

The gut microbiota is a diverse bacterial community consisting of approximately 2000 species, predominantly from five phyla: Firmicutes, Bacteroidetes, Actinobacteria, Proteobacteria, and Verrucomicrobia. The microbiota's bacterial species create distinct compounds that impact the host's health, including well-known short-chain fatty acids. These are produced through the breakdown of dietary fibers and fermentation of undigested carbohydrates by the intestinal microbiota. The main short-chain fatty acids consist of acetate, propionate, and butyrate. The concentration of butyrate in mammalian intestines varies depending on the diet. Its main functions are use as an energy source, cell differentiation, reduction in the inflammatory process in the intestine, and defense against oxidative stress. It also plays an epigenetic role in histone deacetylases, thus helping to reduce the risk of colon cancer. Finally, butyrate affects the gut-brain axis by crossing the brain-blood barrier, making it crucial to determine the right concentrations for both local and peripheral effects. In recent years, there has been a significant amount of attention given to the role of dietary polyphenols and fibers in promoting human health. Polyphenols and dietary fibers both play crucial roles in protecting human health and can produce butyrate through gut microbiota fermentation. This paper aims to summarize information on the key summits related to the negative correlation between intestinal microbiota diversity and chronic diseases to guide future research on determining the specific activity of butyrate from polyphenols and dietary fibers that can carry out these vital functions.


Subject(s)
Butyrates , Dietary Fiber , Gastrointestinal Microbiome , Polyphenols , Gastrointestinal Microbiome/drug effects , Dietary Fiber/metabolism , Dietary Fiber/pharmacology , Humans , Polyphenols/pharmacology , Butyrates/metabolism , Animals , Fatty Acids, Volatile/metabolism , Fermentation
9.
Int J Mol Sci ; 25(13)2024 Jul 05.
Article in English | MEDLINE | ID: mdl-39000498

ABSTRACT

Short chain fatty acids (SCFAs), mainly including acetate, propionate and butyrate, are produced by intestinal bacteria during the fermentation of partially digested and indigestible polysaccharides. SCFAs play an important role in regulating intestinal energy metabolism and maintaining the homeostasis of the intestinal environment and also play an important regulatory role in organs and tissues outside the gut. In recent years, many studies have shown that SCFAs can regulate inflammation and affect host health, and two main signaling mechanisms have also been identified: the activation of G-protein coupled receptors (GPCRs) and inhibition of histone deacetylase (HDAC). In addition, a growing body of evidence highlights the importance of every SCFA in influencing health maintenance and disease development. In this review, we summarized the recent advances concerning the biological properties of SCFAs and their signaling pathways in inflammation and body health. Hopefully, it can provide a systematic theoretical basis for the nutritional prevention and treatment of human diseases.


Subject(s)
Fatty Acids, Volatile , Inflammation , Humans , Fatty Acids, Volatile/metabolism , Inflammation/metabolism , Animals , Signal Transduction , Gastrointestinal Microbiome , Receptors, G-Protein-Coupled/metabolism , Energy Metabolism
10.
J Vis Exp ; (208)2024 Jun 21.
Article in English | MEDLINE | ID: mdl-38975757

ABSTRACT

Gut microbial products are known to act both locally within the intestine and get absorbed into circulation, where their effects can extend to numerous distant organ systems. Short-chain fatty acids (SCFA) are one class of metabolites produced by gut microbes during the fermentation of indigestible dietary fiber. They are now recognized as important contributors to how the gut microbiome influences extra-intestinal organ systems via the gut-lung, gut-brain, and other gut-organ axes throughout the host. SCFAs are absorbed from the colon, through intestinal tissue, into the portal vein (PV). They then pass through the liver, and are consumed in various organs such as the brain, muscle, adipose tissue, and lungs. SCFAs are most easily measured in the expelled fecal material however, more accurate measurements have been obtained from intra-colonic fecal contents. Here we propose that sampling PV and systemic circulating plasma of a single subject may be preferable for studying the absorption, transport, and systemic levels of SCFAs in mice. We present a new technique for efficient blood sampling from the PV and inferior vena cava (IVC) that allows for the collection of relatively large volumes of blood from the portal and systemic circulations. This is accomplished by ligating the PV, thereby allowing for the dilation or enlargement of the PV as it backfills from the mesenteric veins that drain into it. Using this method, we were able to improve the rate of successful collection as well as the total amount of blood collected (up to 0.3 mL from IVC and 0.5 mL from PV).


Subject(s)
Gastrointestinal Microbiome , Portal Vein , Vena Cava, Inferior , Animals , Mice , Portal Vein/metabolism , Gastrointestinal Microbiome/physiology , Vena Cava, Inferior/metabolism , Fatty Acids, Volatile/metabolism , Fatty Acids, Volatile/analysis , Blood Specimen Collection/methods , Male
11.
Cell Mol Life Sci ; 81(1): 293, 2024 Jul 08.
Article in English | MEDLINE | ID: mdl-38976012

ABSTRACT

The function of astrocytes in response to gut microbiota-derived signals has an important role in the pathophysiological processes of central nervous system (CNS) diseases. However, the specific effects of microbiota-derived metabolites on astrocyte activation have not been elucidated yet. Experimental autoimmune encephalomyelitis (EAE) was induced in female C57BL/6 mice as a classical MS model. The alterations of gut microbiota and the levels of short-chain fatty acids (SCFAs) were assessed after EAE induction. We observed that EAE mice exhibit low levels of Allobaculum, Clostridium_IV, Clostridium_XlVb, Lactobacillus genera, and microbial-derived SCFAs metabolites. SCFAs supplementation suppressed astrocyte activation by increasing the level of tryptophan (Trp)-derived AhR ligands that activating the AhR. The beneficial effects of SCFAs supplementation on the clinical scores, histopathological alterations, and the blood brain barrier (BBB)-glymphatic function were abolished by intracisterna magna injection of AAV-GFAP-shAhR. Moreover, SCFAs supplementation suppressed the loss of AQP4 polarity within astrocytes in an AhR-dependent manner. Together, SCFAs potentially suppresses astrocyte activation by amplifying Trp-AhR-AQP4 signaling in EAE mice. Our study demonstrates that SCFAs supplementation may serve as a viable therapy for inflammatory disorders of the CNS.


Subject(s)
Aquaporin 4 , Astrocytes , Encephalomyelitis, Autoimmune, Experimental , Fatty Acids, Volatile , Mice, Inbred C57BL , Receptors, Aryl Hydrocarbon , Signal Transduction , Tryptophan , Animals , Encephalomyelitis, Autoimmune, Experimental/pathology , Encephalomyelitis, Autoimmune, Experimental/drug therapy , Encephalomyelitis, Autoimmune, Experimental/metabolism , Astrocytes/metabolism , Astrocytes/drug effects , Fatty Acids, Volatile/pharmacology , Fatty Acids, Volatile/metabolism , Receptors, Aryl Hydrocarbon/metabolism , Mice , Tryptophan/metabolism , Tryptophan/pharmacology , Female , Signal Transduction/drug effects , Aquaporin 4/metabolism , Aquaporin 4/genetics , Gastrointestinal Microbiome/drug effects , Blood-Brain Barrier/metabolism , Blood-Brain Barrier/drug effects
12.
Sci Rep ; 14(1): 16945, 2024 Jul 23.
Article in English | MEDLINE | ID: mdl-39043759

ABSTRACT

Several pathogenic Escherichia coli strains cause diarrhea. Enteroaggregative E. coli (EAEC) strains are one of the diarrheagenic pathotypes. EAEC cells form a "stacked-brick" arrangement over the intestinal epithelial cells. EAEC isolates express, among other virulence determinants, the AggR transcriptional activator and the aggregative adherence fimbriae (AAF). Overexpression of the aggR gene results in increased expression of virulence factors such as the aff genes, as well as several genes involved in specific metabolic pathways such as fatty acid degradation (fad) and arginine degradation (ast). To support the hypothesis that induction of the expression of some of these pathways may play a role in EAEC virulence, in this study we used a murine infection model to evaluate the impact of the expression of these pathways on infection parameters. Mice infected with a mutant derivative of the EAEC strain 042, characterized by overexpression of the aggR gene, showed increased disease symptoms compared to those exhibited by mice infected with the wild type (wt) strain 042. Several of these symptoms were not increased when the infecting mutant, which overexpressed aggR, lacked the fad and ast pathways. Therefore, our results support the hypothesis that different metabolic pathways contribute to EAEC virulence.


Subject(s)
Escherichia coli Infections , Escherichia coli Proteins , Escherichia coli , Feces , Gastrointestinal Microbiome , Virulence Factors , Animals , Virulence Factors/genetics , Virulence Factors/metabolism , Escherichia coli Infections/microbiology , Escherichia coli Infections/metabolism , Mice , Feces/microbiology , Escherichia coli/pathogenicity , Escherichia coli/genetics , Escherichia coli/metabolism , Escherichia coli Proteins/genetics , Escherichia coli Proteins/metabolism , Fatty Acids, Volatile/metabolism , Mutation , Virulence/genetics , Female , Disease Models, Animal , Gene Expression Regulation, Bacterial , Biomarkers , Trans-Activators
13.
Microbiome ; 12(1): 131, 2024 Jul 19.
Article in English | MEDLINE | ID: mdl-39030599

ABSTRACT

BACKGROUND: The average daily gain (ADG) of preweaning calves significantly influences their adult productivity and reproductive performance. Gastrointestinal microbes are known to exert an impact on host phenotypes, including ADG. The aim of this study was to investigate the mechanisms by which gastrointestinal microbiome regulate ADG in preweaning calves and to further validate them by isolating ADG-associated rumen microbes in vitro. RESULTS: Sixteen Holstein heifer calves were selected from a cohort with 106 calves and divided into higher ADG (HADG; n = 8) and lower ADG (LADG; n = 8) groups. On the day of weaning, samples of rumen contents, hindgut contents, and plasma were collected for rumen metagenomics, rumen metabolomics, hindgut metagenomics, hindgut metabolomics, and plasma metabolomics analyses. Subsequently, rumen contents of preweaning Holstein heifer calves from the same dairy farm were collected to isolate ADG-associated rumen microbes. The results showed that the rumen microbes, including Pyramidobacter sp. C12-8, Pyramidobacter sp. CG50-2, Pyramidobacter porci, unclassified_g_Pyramidobacter, Pyramidobacter piscolens, and Acidaminococcus fermentans, were enriched in the rumen of HADG calves (LDA > 2, P < 0.05). Enrichment of these microbes in HADG calves' rumen promoted carbohydrate degradation and volatile fatty acid production, increasing proportion of butyrate in the rumen and ultimately contributing to higher preweaning ADG in calves (P < 0.05). The presence of active carbohydrate degradation in the rumen was further suggested by the negative correlation of the rumen microbes P. piscolens, P. sp. C12-8 and unclassified_g_Pyramidobacter with the rumen metabolites D-fructose (R < - 0.50, P < 0.05). Widespread positive correlations were observed between rumen microbes (such as P. piscolens, P. porci, and A. fermentans) and beneficial plasma metabolites (such as 1-pyrroline-5-carboxylic acid and 4-fluoro-L-phenylalanine), which were subsequently positively associated with the growth rate of HADG calves (R > 0.50, P < 0.05). We succeeded in isolating a strain of A. fermentans from the rumen contents of preweaning calves and named it Acidaminococcus fermentans P41. The in vitro cultivation revealed its capability to produce butyrate. In vitro fermentation experiments demonstrated that the addition of A. fermentans P41 significantly increased the proportion of butyrate in the rumen fluid (P < 0.05). These results further validated our findings. The relative abundance of Bifidobacterium pseudolongum in the hindgut of HADG calves was negatively correlated with hindgut 4-hydroxyglucobrassicin levels, which were positively correlated with plasma 4-hydroxyglucobrassicin levels, and plasma 4-hydroxyglucobrassicin levels were positively correlated with ADG (P < 0.05). CONCLUSIONS: This study's findings unveil that rumen and hindgut microbes play distinctive roles in regulating the preweaning ADG of Holstein heifer calves. Additionally, the successful isolation of A. fermentans P41 not only validated our findings but also provided a valuable strain resource for modulating rumen microbes in preweaning calves. Video Abstract.


Subject(s)
Gastrointestinal Microbiome , Rumen , Weaning , Animals , Cattle , Rumen/microbiology , Rumen/metabolism , Bacteria/classification , Bacteria/isolation & purification , Bacteria/metabolism , Bacteria/genetics , Female , Fermentation , Metagenomics/methods , Metabolomics , Fatty Acids, Volatile/metabolism , Fatty Acids, Volatile/analysis , Weight Gain , Butyrates/metabolism
14.
Sci Rep ; 14(1): 16816, 2024 Jul 22.
Article in English | MEDLINE | ID: mdl-39039185

ABSTRACT

To accurately define the role of the gut microbiota in health and disease pathogenesis, the preservation of stool sample integrity, in terms of microbial community composition and metabolic function, is critical. This presents a challenge for any studies which rely on participants self-collecting and returning stool samples as this introduces variability and uncertainty of sample storage/handling. Here, we tested the performance of three stool sample collection/preservation buffers when storing human stool samples at different temperatures (room temperature [20 °C], 4 °C and - 80 °C) for up to three days. We compared and quantified differences in 16S rRNA sequencing composition and short-chain fatty acid profiles compared against immediately snap-frozen stool. We found that the choice of preservation buffer had the largest effect on the resulting microbial community and metabolomic profiles. Collectively analysis confirmed that PSP and RNAlater buffered samples most closely recapitulated the microbial diversity profile of the original (immediately - 80 °C frozen) sample and should be prioritised for human stool microbiome studies.


Subject(s)
Feces , Gastrointestinal Microbiome , RNA, Ribosomal, 16S , Specimen Handling , Humans , Feces/microbiology , Specimen Handling/methods , RNA, Ribosomal, 16S/genetics , Gastrointestinal Microbiome/genetics , Fatty Acids, Volatile/analysis , Fatty Acids, Volatile/metabolism , Temperature , Microbiota/genetics , Male , Adult , Metabolomics/methods , Female , Multiomics
15.
Nutrients ; 16(13)2024 Jun 24.
Article in English | MEDLINE | ID: mdl-38999750

ABSTRACT

(1) Background: Recently, academic studies are demonstrating that the cholesterol-lowering effects of pectin oligosaccharides (POSs) are correlated to intestinal flora. However, the mechanisms of POS on cholesterol metabolisms are limited, and the observations of intestinal flora are lacking integrative analyses. (2) Aim and methods: To reveal the regulatory mechanisms of POS on cholesterol metabolism via an integrative analysis of the gut microbiota, the changes in gut microbiota structure and metabolite composition after POS addition were investigated using Illumina MiSeq sequencing and non-targeted metabolomics through in vitro gut microbiota fermentation. (3) Results: The composition of fecal gut flora was adjusted positively by POS. POS increased the abundances of the cholesterol-related bacterial groups Bacteroidetes, Bifidobacterium and Lactobacillus, while it decreased conditional pathogenic Escherichia coli and Enterococcus, showing good prebiotic activities. POS changed the composition of gut microbiota fermentation metabolites (P24), causing significant changes in 221 species of fermentation metabolites in a non-targeted metabolomics analysis and promoting the production of short-chain fatty acids. The abundances of four types of cholesterol metabolism-related metabolites (adenosine monophosphate, cyclic adenosine monophosphate, guanosine and butyrate) were significantly higher in the P24 group than those in the control group without POS addition. (4) Conclusion: The abovementioned results may explain the hypocholesterolemic effects of POS and promotion effects on cholesterol efflux of P24. These findings indicated that the potential regulatory mechanisms of citrus POS on cholesterol metabolism are modulated by cholesterol-related gut microbiota and specific metabolites.


Subject(s)
Cholesterol , Feces , Fermentation , Gastrointestinal Microbiome , Oligosaccharides , Pectins , Gastrointestinal Microbiome/drug effects , Gastrointestinal Microbiome/physiology , Pectins/pharmacology , Pectins/metabolism , Cholesterol/metabolism , Oligosaccharides/pharmacology , Feces/microbiology , Humans , Prebiotics , Male , Metabolomics , Fatty Acids, Volatile/metabolism , Bifidobacterium/metabolism , Bifidobacterium/drug effects , Female , Bacteria/metabolism , Bacteria/drug effects , Bacteria/classification , Citrus
16.
Scand J Immunol ; 99(4): e13346, 2024 Apr.
Article in English | MEDLINE | ID: mdl-39007947

ABSTRACT

Age-related gut bacterial changes during infancy have been widely studied, but it remains still unknown how these changes are associated with immune cell composition. This study's aim was to explore if the temporal development of gut bacteria during infancy prospectively affects immune cell composition. Faecal bacteria and short-chain fatty acids were analysed from 67 PreventADALL study participants at four timepoints (birth to 12 months) using reduced metagenome sequencing and gas chromatography. Immune cell frequencies were assessed using mass cytometry in whole blood samples at 12 months. The infants clustered into four groups based on immune cell composition: clusters 1 and 2 showed a high relative abundance of naïve cells, cluster 3 exhibited increased abundance of classical- and non-classical monocytes and clusters 3 and 4 had elevated neutrophil levels. At all age groups, we did observe significant associations between the gut microbiota and immune cell clusters; however, these were generally from low abundant species. Only at 6 months of age we observed significant associations between abundant (>8%) species and immune cell clusters. Bifidobacterium adolescentis and Porphyromonadaceae are associated with cluster 1, while Bacteroides fragilis and Bifidobacterium longum are associated with clusters 3 and 4 respectively. These species have been linked to T-cell polarization and maturation. No significant correlations were found between short-chain fatty acids and immune cell composition. Our findings suggest that abundant gut bacteria at 6 months may influence immune cell frequencies at 12 months, highlighting the potential role of gut microbiota in shaping later immune cell composition.


Subject(s)
Feces , Gastrointestinal Microbiome , Humans , Infant , Gastrointestinal Microbiome/immunology , Male , Female , Feces/microbiology , Infant, Newborn , Bacteria/immunology , Bacteria/classification , Fatty Acids, Volatile/metabolism , Metagenome , Prospective Studies
17.
Curr Microbiol ; 81(9): 271, 2024 Jul 16.
Article in English | MEDLINE | ID: mdl-39012492

ABSTRACT

Probiotics and prebiotics have been considered as alternative approaches for promoting health. This study aimed to investigate the anticandidal potential of various probiotic Lactobacillus strains and their cell-free supernatants (CFSs). The study assessed the impact of inulin and some fruits as prebiotics on the growth of selected probiotic strains in relation to their anticandidal activity, production of short-chain fatty acids, total phenolic content, and antioxidant activity. Results revealed variations in anticandidal activity based on the specific strains and forms of probiotics used. Non-adjusted CFSs were the most effective against Candida strains, followed by probiotic cells and adjusted CFSs (pH 7). Lacticaseibacillus rhamnosus SD4, L. rhamnosus SD11 and L. rhamnosus GG displayed the strongest anticandidal activity. Non-adjusted CFSs from L. rhamnosus SD11, L. rhamnosus SD4 and L. paracasei SD1 exhibited notable anticandidal effects. The adjusted CFSs of L. rhamnosus SD11 showed the highest anticandidal activity against all non-albicans Candida (NAC) strains, whereas the others were ineffective. Supplementation of L. rhamnosus SD11 with prebiotics, particularly 2% (w/v) mangosteen, exhibited positive results in promoting probiotic growth, short-chain fatty acids production, total phenolic contents, and antioxidant activity, and the subsequent enhancing anticandidal activity against both C. albicans and NAC strains compared to conditions without prebiotics. In conclusion, both live cells and CFSs of tested strains, particularly L. rhamnosus SD11, exhibited the best anticandidal activity. Prebiotics supplementation, especially mangosteen, enhanced probiotic growth and beneficial metabolites against Candida growth. These finding suggested that probiotics and prebiotic supplementation may be an effective alternative treatment for Candida infections.


Subject(s)
Lactobacillus , Prebiotics , Probiotics , Probiotics/pharmacology , Lactobacillus/metabolism , Candida/drug effects , Candida/growth & development , Antioxidants/pharmacology , Inulin/pharmacology , Antifungal Agents/pharmacology , Fatty Acids, Volatile/metabolism , Lacticaseibacillus rhamnosus/metabolism , Phenols/pharmacology
18.
Mediators Inflamm ; 2024: 6263447, 2024.
Article in English | MEDLINE | ID: mdl-39015676

ABSTRACT

Group 2 innate lymphoid cells (ILC2) strongly modulate COPD pathogenesis. However, the significance of microbiota in ILC2s remains unelucidated. Herein, we investigated the immunomodulatory role of short-chain fatty acids (SCFAs) in regulating ILC2-associated airway inflammation and explores its associated mechanism in COPD. In particular, we assessed the SCFA-mediated regulation of survival, proliferation, and cytokine production in lung sorted ILC2s. To elucidate butyrate action in ILC2-driven inflammatory response in COPD models, we administered butyrate to BALB/c mice via drinking water. We revealed that SCFAs, especially butyrate, derived from dietary fiber fermentation by gut microbiota inhibited pulmonary ILC2 functions and suppressed both IL-13 and IL-5 synthesis by murine ILC2s. Using in vivo and in vitro experimentation, we validated that butyrate significantly ameliorated ILC2-induced inflammation. We further demonstrated that butyrate suppressed ILC2 proliferation and GATA3 expression. Additionally, butyrate potentially utilized histone deacetylase (HDAC) inhibition to enhance NFIL3 promoter acetylation, thereby augmenting its expression, which eventually inhibited cytokine production in ILC2s. Taken together, the aforementioned evidences demonstrated a previously unrecognized role of microbial-derived SCFAs on pulmonary ILC2s in COPD. Moreover, our evidences suggest that metabolomics and gut microbiota modulation may prevent lung inflammation of COPD.


Subject(s)
Butyrates , Dietary Fiber , Lymphocytes , Mice, Inbred BALB C , Pulmonary Disease, Chronic Obstructive , Animals , Pulmonary Disease, Chronic Obstructive/immunology , Pulmonary Disease, Chronic Obstructive/metabolism , Mice , Butyrates/pharmacology , Lymphocytes/metabolism , Dietary Fiber/pharmacology , Dietary Fiber/therapeutic use , Fatty Acids, Volatile/metabolism , Inflammation/metabolism , Gastrointestinal Microbiome , Male , Cytokines/metabolism , Humans , GATA3 Transcription Factor/metabolism
19.
Arch Microbiol ; 206(8): 359, 2024 Jul 20.
Article in English | MEDLINE | ID: mdl-39033087

ABSTRACT

In this experiment, the eutrophication system was established by adding sucrose and yeast powder, and the pH and dissolved oxygen were measured in a bioreactor in real time to study the effect of aerobic environment on the fermentation process of Polygonati Rhizoma extract by Lactiplantibacillus plantarum. To further analyze metabolic changes, UPLC-Q-Exactive MS was used for metabolomic analysis and metabolic profiling. Multivariate analysis was performed using principal component analysis and Orthogonal projections to latent structures discriminant analysis. Finally, 313 differential metabolites were selected, 196 of which were annotated through database matching. After fermentation, the content of short-chain fatty acids, lactic acid, and their derivatives increased significantly, and there were 13 kinds and 4 kinds, respectively. Both compounds and their derivatives are beneficial to the intestinal flora. Consequently, incorporating L. plantarum into the aerobic fermentation process of Polygonati Rhizoma extract within the eutrophic system is potentially advantageous in enhancing the impact of its fermentation solution on the gut microbiota and its effects on human health. Our findings for this kind of edible and medicinal material research and development offer useful insights.


Subject(s)
Fermentation , Lactobacillus plantarum , Polygonatum , Rhizome , Polygonatum/chemistry , Polygonatum/metabolism , Rhizome/chemistry , Lactobacillus plantarum/metabolism , Eutrophication , Plant Extracts/metabolism , Plant Extracts/chemistry , Lactic Acid/metabolism , Fatty Acids, Volatile/metabolism , Bioreactors/microbiology , Gastrointestinal Microbiome , Metabolomics
20.
J Agric Food Chem ; 72(29): 16484-16495, 2024 Jul 24.
Article in English | MEDLINE | ID: mdl-38990698

ABSTRACT

As a food contaminant that can be quickly absorbed through the gastrointestinal system, furan has been shown to disrupt the intestinal flora and barrier. Investigation of the intestinal toxicity mechanism of furan is of great significance to health. We previously identified the regulatory impact of salidroside (SAL) against furan-provoked intestinal damage, and the present work further explored whether the alleviating effect of SAL against furan-caused intestinal injury was based on the intestinal flora; three models, normal, pseudo-germ-free, and fecal microbiota transplantation (FMT), were established, and the changes in intestinal morphology, barrier, and inflammation were observed. Moreover, 16S rDNA sequencing observed the variation of the fecal flora associated with inflammation and short-chain fatty acids (SCFAs). Results obtained from the LC-MS/MS suggested that SAL increased furan-inhibited SCFA levels, activated the mRNA expressions of SCFA receptors (GPR41, GPR43, and GPR109A), and inhibited the furan-activated TLR4/MyD88/NF-κB signaling. Analysis of protein-protein interaction further confirmed the aforementioned effects of SAL, which inhibited furan-induced barrier damage and intestinal inflammation.


Subject(s)
Bacteria , Fatty Acids, Volatile , Furans , Gastrointestinal Microbiome , Glucosides , Phenols , Signal Transduction , Toll-Like Receptor 4 , Gastrointestinal Microbiome/drug effects , Glucosides/pharmacology , Phenols/pharmacology , Toll-Like Receptor 4/metabolism , Toll-Like Receptor 4/genetics , Animals , Signal Transduction/drug effects , Furans/pharmacology , Male , Fatty Acids, Volatile/metabolism , Humans , Mice , Bacteria/genetics , Bacteria/classification , Bacteria/isolation & purification , Bacteria/metabolism , Bacteria/drug effects , Intestinal Mucosa/metabolism , Intestinal Mucosa/drug effects , NF-kappa B/metabolism , NF-kappa B/genetics , Rhodiola/chemistry , Inflammation/metabolism , Inflammation/drug therapy , Mice, Inbred C57BL
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