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1.
Appl Microbiol Biotechnol ; 108(1): 358, 2024 Jun 03.
Article En | MEDLINE | ID: mdl-38829381

Biosurfactants are in demand by the global market as natural commodities suitable for incorporation into commercial products or utilization in environmental applications. Fungi are promising producers of these molecules and have garnered interest also for their metabolic capabilities in efficiently utilizing recalcitrant and complex substrates, like hydrocarbons, plastic, etc. Within this framework, biosurfactants produced by two Fusarium solani fungal strains, isolated from plastic waste-contaminated landfill soils, were analyzed. Mycelia of these fungi were grown in the presence of 5% olive oil to drive biosurfactant production. The characterization of the emulsifying and surfactant capacity of these extracts highlighted that two different components are involved. A protein was purified and identified as a CFEM (common in fungal extracellular membrane) containing domain, revealing a good propensity to stabilize emulsions only in its aggregate form. On the other hand, an unidentified cationic smaller molecule exhibits the ability to reduce surface tension. Based on the 3D structural model of the protein, a plausible mechanism for the formation of very stable aggregates, endowed with the emulsifying ability, is proposed. KEY POINTS: • Two Fusarium solani strains are analyzed for their surfactant production. • A cationic surfactant is produced, exhibiting the ability to remarkably reduce surface tension. • An identified protein reveals a good propensity to stabilize emulsions only in its aggregate form.


Fungal Proteins , Fusarium , Surface-Active Agents , Fusarium/metabolism , Fusarium/genetics , Fungal Proteins/metabolism , Fungal Proteins/chemistry , Fungal Proteins/genetics , Surface-Active Agents/metabolism , Surface-Active Agents/chemistry , Emulsifying Agents/metabolism , Emulsifying Agents/chemistry , Soil Microbiology , Emulsions/chemistry , Emulsions/metabolism , Surface Tension , Cysteine/metabolism , Cysteine/chemistry , Olive Oil/metabolism , Olive Oil/chemistry , Mycelium/metabolism
2.
Arch Microbiol ; 206(7): 286, 2024 Jun 03.
Article En | MEDLINE | ID: mdl-38829426

Controlling the hazard of sclerotia produced by the Sclerotinia sclerotiorum is very complex, and it is urgent to adopt an effective method that is harmonious environmentally to control the disease. Among the six isolates isolated from the rhizosphere of lettuce, the isolate HZA84 demonstrated a high activity in its antagonism towards Sclerotinia sclerotiorum in vitro, and produces siderophore. By amplification of internal transcribed spacer (ITS), translation elongation factor 1-alpha (TEF1-α), and RNA polymerase II subunit (RPB2) genes, the isolate HZA84 was identified as Trichoderma asperellum, which was confirmed by analysis of phylogenetic tree. The Scanning electron microscope monitoring detected that the isolate HZA84 spread over the sclerotial surface, thus, damaging, decomposing, and distorting the globular cells of the outer cortex of the sclerotia. The Real-time polymerase chain reaction (RT-qPCR) analysis disclosed the overexpression of two genes (chit33 and chit37) encoding the endochitinase in addition to one gene (prb1) encoding the proteinase during 4 and 8 days of the parasitism behavior of isolate HZA84 on the sclerotia surface. These enzymes aligned together in the sclerotia destruction by hyperparasitism. On the other hand, the pots trial revealed that spraying of isolate HZA84 reduced the drop disease symptoms of lettuce. The disease severity was decreased by 19.33 and the biocontrol efficiency was increased by 80.67% within the fourth week of inoculation. These findings magnify the unique role of Trichoderma in disrupting the development of plant diseases in sustainable ways.


Ascomycota , Lactuca , Phylogeny , Plant Diseases , Lactuca/microbiology , Ascomycota/genetics , Ascomycota/physiology , Plant Diseases/microbiology , Fungal Proteins/genetics , Fungal Proteins/metabolism , Rhizosphere , Antibiosis , Hypocreales/genetics , Hypocreales/metabolism , Hypocreales/isolation & purification , Soil Microbiology , Trichoderma/genetics , Trichoderma/isolation & purification , Trichoderma/physiology , Trichoderma/metabolism
3.
Sci Rep ; 14(1): 12669, 2024 06 03.
Article En | MEDLINE | ID: mdl-38830918

Dermatophytes show a wide geographic distribution and are the main causative agents of skin fungal infections in many regions of the world. Recently, their resistance to antifungal drugs has led to an obstacle to effective treatment. To address the lack of dermatophytosis data in Iraq, this study was designed to investigate the distribution and prevalence of dermatophytes in the human population and single point mutations in squalene epoxidase gene (SQLE) of terbinafine resistant isolates. The identification of 102 dermatophytes isolated from clinical human dermatophytosis was performed through morphological and microscopic characteristics followed by molecular analysis based on ITS and TEF-1α sequencing. Phylogeny was achieved through RAxML analysis. CLSI M38-A2 protocol was used to assess antifungal susceptibility of the isolates to four major antifungal drugs. Additionally, the presence of point mutations in SQLE gene, which are responsible for terbinafine resistance was investigated. Tinea corporis was the most prevalent clinical manifestation accounting for 37.24% of examined cases of dermatophytosis. Based on ITS, T. indotineae (50.98%), T. mentagrophytes (19.61%), and M. canis (29.41%) was identified as an etiologic species. T. indotineae and T. mentagrophytes strains were identified as T. interdigitale based on TEF-1α. Terbinafine showed the highest efficacy among the tested antifungal drugs. T. indotineae and T. mentagrophytes showed the highest resistance to antifungal drugs with MICs of 2-4 and 4 µg/mL, while M. canis was the most susceptible species. Three of T. indotineae isolates showed mutations in SQLE gene Phe397Leu substitution. A non-previously described point mutation, Phe311Leu was identified in T. indotineae and mutations Lys276Asn, Phe397Leu and Leu419Phe were diagnosed in T. mentagrophytes XVII. The results of mutation analysis showed that Phe397Leu was a destabilizing mutation; protein stability has decreased with variations in pH, and point mutations affected the interatomic interaction, resulting in bond disruption. These results could help to control the progression of disease effectively and make decisions regarding the selection of appropriate drugs for dermatophyte infections.


Antifungal Agents , Arthrodermataceae , Drug Resistance, Fungal , Microbial Sensitivity Tests , Point Mutation , Squalene Monooxygenase , Tinea , Humans , Antifungal Agents/pharmacology , Iraq/epidemiology , Tinea/microbiology , Tinea/epidemiology , Tinea/drug therapy , Drug Resistance, Fungal/genetics , Male , Arthrodermataceae/genetics , Arthrodermataceae/drug effects , Arthrodermataceae/pathogenicity , Arthrodermataceae/isolation & purification , Female , Squalene Monooxygenase/genetics , Adult , Phylogeny , Terbinafine/pharmacology , Terbinafine/therapeutic use , Middle Aged , Adolescent , Young Adult , Child , Fungal Proteins/genetics , Aged
4.
J Med Microbiol ; 73(6)2024 Jun.
Article En | MEDLINE | ID: mdl-38836745

Introduction. The fungal pathogen Aspergillus fumigatus can induce prolonged colonization of the lungs of susceptible patients, resulting in conditions such as allergic bronchopulmonary aspergillosis and chronic pulmonary aspergillosis.Hypothesis. Analysis of the A. fumigatus secretome released during sub-lethal infection of G. mellonella larvae may give an insight into products released during prolonged human colonisation.Methodology. Galleria mellonella larvae were infected with A. fumigatus, and the metabolism of host carbohydrate and proteins and production of fungal virulence factors were analysed. Label-free qualitative proteomic analysis was performed to identify fungal proteins in larvae at 96 hours post-infection and also to identify changes in the Galleria proteome as a result of infection.Results. Infected larvae demonstrated increasing concentrations of gliotoxin and siderophore and displayed reduced amounts of haemolymph carbohydrate and protein. Fungal proteins (399) were detected by qualitative proteomic analysis in cell-free haemolymph at 96 hours and could be categorized into seven groups, including virulence (n = 25), stress response (n = 34), DNA repair and replication (n = 39), translation (n = 22), metabolism (n = 42), released intracellular (n = 28) and cellular development and cell cycle (n = 53). Analysis of the Gallerial proteome at 96 hours post-infection revealed changes in the abundance of proteins associated with immune function, metabolism, cellular structure, insect development, transcription/translation and detoxification.Conclusion. Characterizing the impact of the fungal secretome on the host may provide an insight into how A. fumigatus damages tissue and suppresses the immune response during long-term pulmonary colonization.


Aspergillus fumigatus , Fungal Proteins , Larva , Moths , Animals , Aspergillus fumigatus/metabolism , Larva/microbiology , Moths/microbiology , Fungal Proteins/metabolism , Fungal Proteins/genetics , Secretome/metabolism , Proteomics , Virulence Factors/metabolism , Proteome/analysis , Hemolymph/microbiology , Hemolymph/metabolism , Virulence , Aspergillosis/microbiology , Aspergillosis/metabolism
5.
Nat Commun ; 15(1): 4312, 2024 May 21.
Article En | MEDLINE | ID: mdl-38773118

Genomics-guided methodologies have revolutionized the discovery of natural products. However, a major challenge in the field of genome mining is determining how to selectively extract biosynthetic gene clusters (BGCs) for untapped natural products from numerous available genome sequences. In this study, we developed a fungal genome mining tool that extracts BGCs encoding enzymes that lack a detectable protein domain (i.e., domainless enzymes) and are not recognized as biosynthetic proteins by existing bioinformatic tools. We searched for BGCs encoding a homologue of Pyr4-family terpene cyclases, which are representative examples of apparently domainless enzymes, in approximately 2000 fungal genomes and discovered several BGCs with unique features. The subsequent characterization of selected BGCs led to the discovery of fungal onoceroid triterpenoids and unprecedented onoceroid synthases. Furthermore, in addition to the onoceroids, a previously unreported sesquiterpene hydroquinone, of which the biosynthesis involves a Pyr4-family terpene cyclase, was obtained. Our genome mining tool has broad applicability in fungal genome mining and can serve as a beneficial platform for accessing diverse, unexploited natural products.


Genome, Fungal , Multigene Family , Triterpenes , Triterpenes/metabolism , Triterpenes/chemistry , Fungal Proteins/genetics , Fungal Proteins/metabolism , Genomics/methods , Computational Biology/methods , Phylogeny , Biological Products/metabolism , Biological Products/chemistry , Biosynthetic Pathways/genetics , Data Mining
6.
Biochemistry ; 63(10): 1335-1346, 2024 May 21.
Article En | MEDLINE | ID: mdl-38690768

Lipoxygenases (LOXs) from pathogenic fungi are potential therapeutic targets for defense against plant and select human diseases. In contrast to the canonical LOXs in plants and animals, fungal LOXs are unique in having appended N-linked glycans. Such important post-translational modifications (PTMs) endow proteins with altered structure, stability, and/or function. In this study, we present the structural and functional outcomes of removing or altering these surface carbohydrates on the LOX from the devastating rice blast fungus, M. oryzae, MoLOX. Alteration of the PTMs did notinfluence the active site enzyme-substrate ground state structures as visualized by electron-nuclear double resonance (ENDOR) spectroscopy. However, removal of the eight N-linked glycans by asparagine-to-glutamine mutagenesis nonetheless led to a change in substrate selectivity and an elevated activation energy for the reaction with substrate linoleic acid, as determined by kinetic measurements. Comparative hydrogen-deuterium exchange mass spectrometry (HDX-MS) analysis of wild-type and Asn-to-Gln MoLOX variants revealed a regionally defined impact on the dynamics of the arched helix that covers the active site. Guided by these HDX results, a single glycan sequon knockout was generated at position 72, and its comparative substrate selectivity from kinetics nearly matched that of the Asn-to-Gln variant. The cumulative data from model glyco-enzyme MoLOX showcase how the presence, alteration, or removal of even a single N-linked glycan can influence the structural integrity and dynamics of the protein that are linked to an enzyme's catalytic proficiency, while indicating that extensive glycosylation protects the enzyme during pathogenesis by protecting it from protease degradation.


Lipoxygenase , Glycosylation , Lipoxygenase/metabolism , Lipoxygenase/chemistry , Lipoxygenase/genetics , Substrate Specificity , Protein Conformation , Catalytic Domain , Protein Processing, Post-Translational , Fungal Proteins/metabolism , Fungal Proteins/chemistry , Fungal Proteins/genetics , Models, Molecular , Polysaccharides/metabolism , Polysaccharides/chemistry , Kinetics , Enzyme Activation
7.
J Agric Food Chem ; 72(20): 11606-11616, 2024 May 22.
Article En | MEDLINE | ID: mdl-38722802

In this work, three MP extracts obtained from Torulaspora delbrueckii were added to red wine, and the changes in phenolic composition, color, and astringency were evaluated by HPLC-DAD-ESI-MS, tristimulus colorimetry, and sensory analysis, respectively. The MP extracts modified wine phenolic composition differently depending on the type of MP. Moreover, two MP extracts were able to reduce wine astringency. The fact that the MP-treated wines showed an increased flavanol content suggests the formation of MP-flavanol aggregates that remain in solution. Furthermore, the formation of these aggregates may hinder the interaction of flavanols with salivary proteins in the mouth. The effect of these MPs might be associated with their larger size, which could influence their ability to bind flavanols and salivary proteins. However, one of the astringent-modulating MPs also produced a loss of color, highlighting the importance of assessing the overall impact of MPs on the organoleptic properties of wine.


Taste , Torulaspora , Wine , Wine/analysis , Humans , Torulaspora/metabolism , Torulaspora/chemistry , Phenols/metabolism , Phenols/chemistry , Color , Fungal Proteins/metabolism , Fungal Proteins/chemistry , Chromatography, High Pressure Liquid , Female , Male , Membrane Glycoproteins
8.
PLoS Genet ; 20(5): e1011281, 2024 May.
Article En | MEDLINE | ID: mdl-38743788

CgHog1, terminal kinase of the high-osmolarity glycerol signalling pathway, orchestrates cellular response to multiple external stimuli including surplus-environmental iron in the human fungal pathogen Candida glabrata (Cg). However, CgHog1 substrates remain unidentified. Here, we show that CgHog1 adversely affects Cg adherence to host stomach and kidney epithelial cells in vitro, but promotes Cg survival in the iron-rich gastrointestinal tract niche. Further, CgHog1 interactome and in vitro phosphorylation analysis revealed CgSub2 (putative RNA helicase) to be a CgHog1 substrate, with CgSub2 also governing iron homeostasis and host adhesion. CgSub2 positively regulated EPA1 (encodes a major adhesin) expression and host adherence via its interactor CgHtz1 (histone H2A variant). Notably, both CgHog1 and surplus environmental iron had a negative impact on CgSub2-CgHtz1 interaction, with CgHTZ1 or CgSUB2 deletion reversing the elevated adherence of Cghog1Δ to epithelial cells. Finally, the surplus-extracellular iron led to CgHog1 activation, increased CgSub2 phosphorylation, elevated CgSub2-CgHta (canonical histone H2A) interaction, and EPA1 transcriptional activation, thereby underscoring the iron-responsive, CgHog1-induced exchange of histone partners of CgSub2. Altogether, our work mechanistically defines how CgHog1 couples Epa1 adhesin expression with iron abundance, and point towards specific chromatin composition modification programs that probably aid fungal pathogens align their adherence to iron-rich (gut) and iron-poor (blood) host niches.


Candida glabrata , Cell Adhesion , Epithelial Cells , Fungal Proteins , Histones , Candida glabrata/genetics , Candida glabrata/metabolism , Humans , Histones/metabolism , Histones/genetics , Epithelial Cells/microbiology , Epithelial Cells/metabolism , Cell Adhesion/genetics , Fungal Proteins/metabolism , Fungal Proteins/genetics , Phosphorylation , Mitogen-Activated Protein Kinases/metabolism , Mitogen-Activated Protein Kinases/genetics , Iron/metabolism , Gene Expression Regulation, Fungal , Candidiasis/microbiology , Candidiasis/genetics , Signal Transduction
9.
Commun Biol ; 7(1): 627, 2024 May 24.
Article En | MEDLINE | ID: mdl-38789513

In recombinant protein-producing yeast strains, cells experience high production-related stresses similar to high temperatures. It is possible to increase recombinant protein production by enhancing thermotolerance, but few studies have focused on this topic. Here we aim to identify cellular regulators that can simultaneously activate thermotolerance and high yield of recombinant protein. Through screening at 46 °C, a heat-resistant Kluyveromyces marxianus (K. marxianus) strain FDHY23 is isolated. It also exhibits enhanced recombinant protein productivity at both 30 °C and high temperatures. The CYR1N1546K mutation is identified as responsible for FDHY23's improved phenotype, characterized by weakened adenylate cyclase activity and reduced cAMP production. Introducing this mutation into the wild-type strain greatly enhances both thermotolerance and recombinant protein yields. RNA-seq analysis reveals that under high temperature and recombinant protein production conditions, CYR1 mutation-induced reduction in cAMP levels can stimulate cells to improve its energy supply system and optimize material synthesis, meanwhile enhance stress resistance, based on the altered cAMP signaling cascades. Our study provides CYR1 mutation as a novel target to overcome the bottleneck in achieving high production of recombinant proteins under high temperature conditions, and also offers a convenient approach for high-throughput screening of recombinant proteins with high yields.


Cyclic AMP , Kluyveromyces , Recombinant Proteins , Signal Transduction , Cyclic AMP/metabolism , Recombinant Proteins/metabolism , Recombinant Proteins/genetics , Kluyveromyces/genetics , Kluyveromyces/metabolism , Thermotolerance/genetics , Mutation , Fungal Proteins/genetics , Fungal Proteins/metabolism , Hot Temperature
10.
Toxins (Basel) ; 16(5)2024 May 09.
Article En | MEDLINE | ID: mdl-38787069

The fungal cell wall serves as the primary interface between fungi and their external environment, providing protection and facilitating interactions with the surroundings. Chitin is a vital structural element in fungal cell wall. Chitin deacetylase (CDA) can transform chitin into chitosan through deacetylation, providing various biological functions across fungal species. Although this modification is widespread in fungi, the biological functions of CDA enzymes in Aspergillus flavus remain largely unexplored. In this study, we aimed to investigate the biofunctions of the CDA family in A. flavus. The A. flavus genome contains six annotated putative chitin deacetylases. We constructed knockout strains targeting each member of the CDA family, including Δcda1, Δcda2, Δcda3, Δcda4, Δcda5, and Δcda6. Functional analyses revealed that the deletion of CDA family members neither significantly affects the chitin content nor exhibits the expected chitin deacetylation function in A. flavus. However, the Δcda6 strain displayed distinct phenotypic characteristics compared to the wild-type (WT), including an increased conidia count, decreased mycelium production, heightened aflatoxin production, and impaired seed colonization. Subcellular localization experiments indicated the cellular localization of CDA6 protein within the cell wall of A. flavus filaments. Moreover, our findings highlight the significance of the CBD1 and CBD2 structural domains in mediating the functional role of the CDA6 protein. Overall, we analyzed the gene functions of CDA family in A. flavus, which contribute to a deeper understanding of the mechanisms underlying aflatoxin contamination and lay the groundwork for potential biocontrol strategies targeting A. flavus.


Aflatoxins , Amidohydrolases , Aspergillus flavus , Aspergillus flavus/genetics , Aspergillus flavus/enzymology , Aspergillus flavus/metabolism , Amidohydrolases/genetics , Amidohydrolases/metabolism , Aflatoxins/biosynthesis , Aflatoxins/metabolism , Aflatoxins/genetics , Fungal Proteins/genetics , Fungal Proteins/metabolism , Chitin/metabolism , Cell Wall/metabolism
11.
PLoS Pathog ; 20(5): e1012176, 2024 May.
Article En | MEDLINE | ID: mdl-38709846

Magnaporthe AVRs and ToxB-like (MAX) effectors constitute a family of secreted virulence proteins in the fungus Pyricularia oryzae (syn. Magnaporthe oryzae), which causes blast disease on numerous cereals and grasses. In spite of high sequence divergence, MAX effectors share a common fold characterized by a ß-sandwich core stabilized by a conserved disulfide bond. In this study, we investigated the structural landscape and diversity within the MAX effector repertoire of P. oryzae. Combining experimental protein structure determination and in silico structure modeling we validated the presence of the conserved MAX effector core domain in 77 out of 94 groups of orthologs (OG) identified in a previous population genomic study. Four novel MAX effector structures determined by NMR were in remarkably good agreement with AlphaFold2 (AF2) predictions. Based on the comparison of the AF2-generated 3D models we propose a classification of the MAX effectors superfamily in 20 structural groups that vary in the canonical MAX fold, disulfide bond patterns, and additional secondary structures in N- and C-terminal extensions. About one-third of the MAX family members remain singletons, without strong structural relationship to other MAX effectors. Analysis of the surface properties of the AF2 MAX models also highlights the high variability within the MAX family at the structural level, potentially reflecting the wide diversity of their virulence functions and host targets.


Ascomycota , Fungal Proteins , Plant Diseases , Fungal Proteins/chemistry , Fungal Proteins/metabolism , Fungal Proteins/genetics , Ascomycota/genetics , Ascomycota/pathogenicity , Ascomycota/metabolism , Plant Diseases/microbiology , Models, Molecular , Protein Conformation , Virulence , Virulence Factors/genetics , Virulence Factors/chemistry , Virulence Factors/metabolism , Amino Acid Sequence
12.
Cell Host Microbe ; 32(5): 625-626, 2024 May 08.
Article En | MEDLINE | ID: mdl-38723598

Fungi colonize the mammalian gastrointestinal (GI) tract and can adopt both commensal and opportunistic lifestyles. In a recent issue of Nature, Liang et al. unraveled the complex interplay between Candida morphotypes and the gut bacterial microbiota and described a key role for candidalysin in gut colonization.1.


Candida , Gastrointestinal Microbiome , Gastrointestinal Tract , Symbiosis , Gastrointestinal Microbiome/physiology , Humans , Gastrointestinal Tract/microbiology , Animals , Candida/physiology , Fungal Proteins/metabolism , Fungal Proteins/genetics
13.
Mol Biol Rep ; 51(1): 682, 2024 May 25.
Article En | MEDLINE | ID: mdl-38796647

BACKGROUND: Control of blackleg disease of canola caused by the fungus Leptosphaeria maculans relies on strategies such as the inhibition of growth with fungicides. However, other chemicals are used during canola cultivation, including fertilizers and herbicides. There is widespread use of herbicides that target the acetolactate synthase (ALS) enzyme involved in branched chain amino acid synthesis and low levels of these amino acids within leaves of Brassica species. In L. maculans the ilv2 gene encodes ALS and thus ALS-inhibiting herbicides may inadvertently impact the fungus. METHODS AND RESULTS: Here, the impact of a commercial herbicide targeting ALS and mutation of the homologous ilv2 gene in L. maculans was explored. Exposure to herbicide had limited impact on growth in vitro but reduced lesion sizes in plant disease experiments. Furthermore, the mutation of the ilv2 gene via CRISPR-Cas9 gene editing rendered the fungus non-pathogenic. CONCLUSION: Herbicide applications can influence disease outcome, but likely to a minor extent.


Acetolactate Synthase , Amino Acids, Branched-Chain , Herbicides , Leptosphaeria , Plant Diseases , Acetolactate Synthase/genetics , Acetolactate Synthase/metabolism , Plant Diseases/microbiology , Herbicides/pharmacology , Amino Acids, Branched-Chain/biosynthesis , Amino Acids, Branched-Chain/metabolism , Leptosphaeria/genetics , Leptosphaeria/pathogenicity , Mutation/genetics , Fungal Proteins/genetics , Fungal Proteins/metabolism , Gene Editing/methods , Plant Leaves/microbiology , CRISPR-Cas Systems/genetics , Brassica/microbiology , Ascomycota/pathogenicity , Ascomycota/genetics
14.
Int J Med Mushrooms ; 26(6): 53-68, 2024.
Article En | MEDLINE | ID: mdl-38801087

The purification of a fibrinolytic enzyme from the fruiting bodies of wild-growing medicinal mushroom, Pycnoporus coccineus was achieved through a two-step procedure, resulting in its homogeneity. This purification process yielded a significant 4.13-fold increase in specific activity and an 8.0% recovery rate. The molecular weight of P. coccineus fibrinolytic enzyme (PCFE) was estimated to be 23 kDa using sodium dodecyl sulfate-polyacrylamide gel electrophoresis analysis. PCFE demonstrated its optimal activity at a temperature of 40 °C and pH 8. Notably, the enzymatic activity was inhibited by the presence of zinc or copper metal ions, as well as serine protease inhibitors, such as phenylmethylsulfonyl fluoride and 4-amidinophenylmethanesulfonyl fluoride. PCFE exhibited remarkable specificity towards a synthetic chromogenic substrate for thrombin. The enzyme demonstrated the Michaelis-Menten constant (Km), maximal velocity (V ), and catalytic rate constant (Kcat) values of 3.01 mM, 0.33 mM min-1 µg-1, and 764.1 s-1, respectively. In vitro assays showed PCFE's ability to effectively degrade fibrin and blood clots. The enzyme induced alterations in the density and structural characteristics of fibrin clots. PCFE exhibited significant effects on various clotting parameters, including recalcification time, activated partial thromboplastin time, prothrombin time, serotonin secretion from thrombin-activated platelets, and thrombin-induced acute thromboembolism. These findings suggest that P. coccineus holds potential as an antithrombotic biomaterials and resources for cardiovascular research.


Fibrinolytic Agents , Pycnoporus , Serine Proteases , Fibrinolytic Agents/pharmacology , Fibrinolytic Agents/isolation & purification , Fibrinolytic Agents/chemistry , Serine Proteases/isolation & purification , Serine Proteases/pharmacology , Serine Proteases/metabolism , Serine Proteases/chemistry , Animals , Pycnoporus/enzymology , Molecular Weight , Fruiting Bodies, Fungal/chemistry , Hydrogen-Ion Concentration , Temperature , Humans , Fibrin/metabolism , Fungal Proteins/isolation & purification , Fungal Proteins/chemistry , Fungal Proteins/pharmacology
15.
Biochim Biophys Acta Mol Cell Res ; 1871(5): 119742, 2024 Jun.
Article En | MEDLINE | ID: mdl-38702017

Peroxisomes are ubiquitous cell organelles involved in various metabolic pathways. In order to properly function, several cofactors, substrates and products of peroxisomal enzymes need to pass the organellar membrane. So far only a few transporter proteins have been identified. We analysed peroxisomal membrane fractions purified from the yeast Hansenula polymorpha by untargeted label-free quantitation mass spectrometry. As expected, several known peroxisome-associated proteins were enriched in the peroxisomal membrane fraction. In addition, several other proteins were enriched, including mitochondrial transport proteins. Localization studies revealed that one of them, the mitochondrial phosphate carrier Mir1, has a dual localization on mitochondria and peroxisomes. To better understand the molecular mechanisms of dual sorting, we localized Mir1 in cells lacking Pex3 or Pex19, two peroxins that play a role in targeting of peroxisomal membrane proteins. In these cells Mir1 only localized to mitochondria, indicating that Pex3 and Pex19 are required to sort Mir1 to peroxisomes. Analysis of the localization of truncated versions of Mir1 in wild-type H. polymorpha cells revealed that most of them localized to mitochondria, but only one, consisting of the transmembrane domains 3-6, was peroxisomal. Peroxisomal localization of this construct was lost in a MIR1 deletion strain, indicating that full-length Mir1 was required for the localization of the truncated protein to peroxisomes. Our data suggest that only full-length Mir1 sorts to peroxisomes, while Mir1 contains multiple regions with mitochondrial sorting information. Data are available via ProteomeXchange with identifier PXD050324.


Fungal Proteins , Mitochondria , Peroxisomes , Pichia , Peroxisomes/metabolism , Mitochondria/metabolism , Mitochondria/genetics , Fungal Proteins/metabolism , Fungal Proteins/genetics , Pichia/metabolism , Pichia/genetics , Membrane Proteins/metabolism , Membrane Proteins/genetics , Peroxins/metabolism , Peroxins/genetics , Mitochondrial Proteins/metabolism , Mitochondrial Proteins/genetics , Protein Transport
16.
J Agric Food Chem ; 72(19): 11002-11012, 2024 May 15.
Article En | MEDLINE | ID: mdl-38700031

Due to the increasing demand for natural food ingredients, including taste-active compounds, enzyme-catalyzed conversions of natural substrates, such as flavonoids, are promising tools to align with the principles of Green Chemistry. In this study, a novel O-methyltransferase activity was identified in the mycelium of Lentinula edodes, which was successfully applied to generate the taste-active flavonoids hesperetin, hesperetin dihydrochalcone, homoeriodictyol, and homoeriodictyol dihydrochalcone. Furthermore, the mycelium-mediated OMT activity allowed for the conversion of various catecholic substrates, yielding their respective (iso-)vanilloids, while monohydroxylated compounds were not converted. By means of a bottom-up proteomics approach, three putative O-methyltransferases were identified, and subsequently, synthetic, codon-optimized genes were heterologously expressed in Escherichia coli. The purified enzymes confirmed the biocatalytic O-methylation activity against targeted flavonoids containing catechol motifs.


Biocatalysis , Catechol O-Methyltransferase , Flavonoids , Fungal Proteins , Shiitake Mushrooms , Shiitake Mushrooms/enzymology , Shiitake Mushrooms/genetics , Shiitake Mushrooms/chemistry , Shiitake Mushrooms/metabolism , Catechol O-Methyltransferase/genetics , Catechol O-Methyltransferase/metabolism , Catechol O-Methyltransferase/chemistry , Fungal Proteins/genetics , Fungal Proteins/metabolism , Fungal Proteins/chemistry , Flavonoids/chemistry , Flavonoids/metabolism , Flavoring Agents/metabolism , Flavoring Agents/chemistry , Mycelium/enzymology , Mycelium/genetics , Mycelium/chemistry , Mycelium/metabolism , Substrate Specificity
17.
Nat Commun ; 15(1): 3770, 2024 May 04.
Article En | MEDLINE | ID: mdl-38704366

Aspergillus fumigatus is the leading causative agent of life-threatening invasive aspergillosis in immunocompromised individuals. One antifungal class used to treat Aspergillus infections is the fungistatic echinocandins, semisynthetic drugs derived from naturally occurring fungal lipopeptides. By inhibiting beta-1,3-glucan synthesis, echinocandins cause both fungistatic stunting of hyphal growth and repeated fungicidal lysis of apical tip compartments. Here, we uncover an endogenous mechanism of echinocandin tolerance in A. fumigatus whereby the inducible oxylipin signal 5,8-diHODE confers protection against tip lysis via the transcription factor ZfpA. Treatment of A. fumigatus with echinocandins induces 5,8-diHODE synthesis by the fungal oxygenase PpoA in a ZfpA dependent manner resulting in a positive feedback loop. This protective 5,8-diHODE/ZfpA signaling relay is conserved among diverse isolates of A. fumigatus and in two other Aspergillus pathogens. Our findings reveal an oxylipin-directed growth program-possibly arisen through natural encounters with native echinocandin producing fungi-that enables echinocandin tolerance in pathogenic aspergilli.


Antifungal Agents , Aspergillosis , Aspergillus fumigatus , Echinocandins , Fungal Proteins , Oxylipins , Antifungal Agents/pharmacology , Echinocandins/pharmacology , Aspergillus fumigatus/drug effects , Aspergillus fumigatus/metabolism , Fungal Proteins/metabolism , Fungal Proteins/genetics , Fungal Proteins/antagonists & inhibitors , Oxylipins/metabolism , Oxylipins/pharmacology , Aspergillosis/drug therapy , Aspergillosis/microbiology , Signal Transduction/drug effects , Gene Expression Regulation, Fungal/drug effects , Hyphae/drug effects , Hyphae/growth & development , Hyphae/metabolism , Transcription Factors/metabolism , Transcription Factors/genetics
18.
J Pineal Res ; 76(4): e12960, 2024 May.
Article En | MEDLINE | ID: mdl-38747028

Natural products, known for their environmental safety, are regarded as a significant basis for the modification and advancement of fungicides. Melatonin, as a low-cost natural indole, exhibits diverse biological functions, including antifungal activity. However, its potential as an antifungal agent has not been fully explored. In this study, a series of melatonin derivatives targeting the mitogen-activated protein kinase (Mps1) protein of fungal pathogens were synthesized based on properties of melatonin, among which the trifluoromethyl-substituted derivative Mt-23 exhibited antifungal activity against seven plant pathogenic fungi, and effectively reduced the severity of crop diseases, including rice blast, Fusarium head blight of wheat and gray mold of tomato. In particular, its EC50 (5.4 µM) against the rice blast fungus Magnaporthe oryzae is only one-fourth that of isoprothiolane (22 µM), a commercial fungicide. Comparative analyzes revealed that Mt-23 simultaneously targets the conserved protein kinase Mps1 and lipid protein Cap20. Surface plasmon resonance assays showed that Mt-23 directly binds to Mps1 and Cap20. In this study, we provide a strategy for developing antifungal agents by modifying melatonin, and the resultant melatonin derivative Mt-23 is a commercially valuable, eco-friendly and broad-spectrum antifungal agent to combat crop disease.


Antifungal Agents , Melatonin , Melatonin/pharmacology , Melatonin/chemistry , Melatonin/analogs & derivatives , Antifungal Agents/pharmacology , Antifungal Agents/chemistry , Plant Diseases/microbiology , Fungal Proteins/metabolism , Fungicides, Industrial/pharmacology , Fungicides, Industrial/chemistry , Fungicides, Industrial/chemical synthesis
19.
Curr Microbiol ; 81(7): 173, 2024 May 15.
Article En | MEDLINE | ID: mdl-38750329

The ability of fungi to effectively sense and internalize signals related to extracellular changing environments is essential for survival. This adaptability is particularly important for fungal pathogens of humans and plants that must sense and respond to drastic environmental changes when colonizing their hosts. One of the most important physicochemical factors affecting fungal growth and development is the pH. Ascomycota fungal species possess mechanisms such as the Pal/Rim pathway for external pH sensing and adaptation. However, the conservation of this mechanism in other fungi, such as Ustilaginomycetes is still little studied. To overcome this knowledge gap, we used a comparative genomic approach to explore the conservation of the Pal/Rim pathway in the 13 best sequenced and annotated Ustilaginomycetes. Our findings reveal that the Rim proteins and the Endosomal Sorting Complex Required for Transport (ESCRT) proteins are conserved in Ustilaginomycetes. They conserve the canonical domains present in Pal/Rim and ESCRT proteins of Ascomycota. This study sheds light on the molecular mechanisms used by these fungi for responding to extracellular stresses such as the pH, and open the door to further experimentations for understanding the molecular bases of the signaling in Ustilaginomycetes.


Fungal Proteins , Fungal Proteins/genetics , Fungal Proteins/metabolism , Hydrogen-Ion Concentration , Signal Transduction , Ascomycota/genetics , Ascomycota/metabolism , Endosomal Sorting Complexes Required for Transport/metabolism , Endosomal Sorting Complexes Required for Transport/genetics , Phylogeny
20.
Methods Mol Biol ; 2775: 269-275, 2024.
Article En | MEDLINE | ID: mdl-38758324

Urease and phospholipase are enzymes that are important virulence factors for Cryptococcus neoformans. These are two of the most studied enzymes involved in how C. neoformans breaches the blood-brain barrier. Additionally, phospholipase secretion also supports dissemination from the lungs. This chapter describes the methods used to measure the secretion of these enzymes, which may be used to characterize strain invasiveness and virulence.


Cryptococcus neoformans , Phospholipases , Urease , Urease/metabolism , Cryptococcus neoformans/enzymology , Cryptococcus neoformans/pathogenicity , Phospholipases/metabolism , Cryptococcosis/microbiology , Virulence Factors/metabolism , Humans , Fungal Proteins/metabolism , Virulence
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