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1.
Pediatr Neurol ; 160: 45-53, 2024 Nov.
Article in English | MEDLINE | ID: mdl-39181022

ABSTRACT

BACKGROUND: GTPases of the Rab family are important orchestrators of membrane trafficking, and their dysregulation has been linked to a variety of neuropathologies. In 2017, we established a causal link between RAB11A variants and developmental and epileptic encephalopathy. In this study, we expand the phenotype of RAB11A-associated neurodevelopmental disorder and explore genotype-phenotype correlations. METHODS: We assessed 16 patients with pathogenic or likely pathogenic RAB11A variants, generally de novo, heterozygous missense variants. One individual had a homozygous nonsense variant, although concomitant with a pathogenic LAMA2 variant, which made their respective contributions to the phenotype difficult to discriminate. RESULTS: We reinforce the finding that certain RAB11A missense variants lead to intellectual disability and developmental delays. Other clinical features might include gait disturbances, hypotonia, magnetic resonance imaging abnormalities, visual anomalies, dysmorphisms, early adrenarche, and obesity. Epilepsy seems to be less common and linked to variants outside the binding sites. Individuals with variants in the binding sites seem to have a more multisystemic, nonepileptic phenotype. CONCLUSIONS: Similar to other Rab-related disorders, RAB11A-associated neurodevelopmental disorder can also impact gait, tonus, brain anatomy and physiology, vision, adrenarche, and body weight and structure. Epilepsy seems to affect the minority of patients with variants outside the binding sites.


Subject(s)
Genetic Association Studies , Neurodevelopmental Disorders , rab GTP-Binding Proteins , Humans , rab GTP-Binding Proteins/genetics , Male , Child , Female , Neurodevelopmental Disorders/genetics , Child, Preschool , Adolescent , Cohort Studies , Mutation, Missense , Phenotype , Intellectual Disability/genetics , Intellectual Disability/diagnostic imaging , Epilepsy/genetics , Epilepsy/physiopathology , Epilepsy/diagnostic imaging , Infant , Developmental Disabilities/genetics , Developmental Disabilities/diagnostic imaging , Developmental Disabilities/etiology
2.
Prenat Diagn ; 44(9): 1111-1114, 2024 08.
Article in English | MEDLINE | ID: mdl-38877377

ABSTRACT

Nicolaides-Baraitser syndrome (NCBRS) is a rare autosomal dominant genetic condition that is characterized by severe intellectual disability, dysmorphic facial features, short stature, sparse hair, and early onset seizures. This diagnosis is established by suggestive clinical findings and the identification of a heterozygous SMARCA2 pathogenic variant by molecular genetic testing. There are not, however, consensus clinical diagnostic criteria for this condition as there are so few documented cases. Here, we present a case of prenatally diagnosed caudal regression with sacral agenesis and congenital vertical talus (rocker bottom feet) that was ultimately found to have a de novo SMARCA2 pathogenic variant. The patient had an amniocentesis with normal karyotype and microarray followed by failed direct rapid whole exome sequencing (WES) due to maternal cell contamination. She elected for termination of the pregnancy based on the clinical prognosis of the ultrasound findings; WES revealed a pathogenic variant after her termination. We believe this is the first case of these findings associated with NCBRS. If any future cases of either finding are found in association with a SMARCA2 genetic variant, caudal regression and rocker bottom feet should be included in the spectrum of physical traits associated with this pathogenic variant.


Subject(s)
Abnormalities, Multiple , Facies , Intellectual Disability , Transcription Factors , Adult , Female , Humans , Pregnancy , Abnormalities, Multiple/genetics , Abnormalities, Multiple/diagnostic imaging , Abnormalities, Multiple/diagnosis , Exome Sequencing , Foot Deformities, Congenital , Hypotrichosis , Intellectual Disability/genetics , Intellectual Disability/diagnosis , Intellectual Disability/diagnostic imaging , Sacrum/abnormalities , Sacrum/diagnostic imaging , Transcription Factors/genetics , Ultrasonography, Prenatal
3.
Genes (Basel) ; 15(5)2024 04 25.
Article in English | MEDLINE | ID: mdl-38790177

ABSTRACT

SATB1 (MIM #602075) is a relatively new gene reported only in recent years in association with neurodevelopmental disorders characterized by variable facial dysmorphisms, global developmental delay, poor or absent speech, altered electroencephalogram (EEG), and brain abnormalities on imaging. To date about thirty variants in forty-four patients/children have been described, with a heterogeneous spectrum of clinical manifestations. In the present study, we describe a new patient affected by mild intellectual disability, speech disorder, and non-specific abnormalities on EEG and neuroimaging. Family studies identified a new de novo frameshift variant c.1818delG (p.(Gln606Hisfs*101)) in SATB1. To better define genotype-phenotype associations in the different types of reported SATB1 variants, we reviewed clinical data from our patient and from the literature and compared manifestations (epileptic activity, EEG abnormalities and abnormal brain imaging) due to missense variants versus those attributable to loss-of-function/premature termination variants. Our analyses showed that the latter variants are associated with less severe, non-specific clinical features when compared with the more severe phenotypes due to missense variants. These findings provide new insights into SATB1-related disorders.


Subject(s)
Brain , Electroencephalography , Epilepsy , Matrix Attachment Region Binding Proteins , Humans , Matrix Attachment Region Binding Proteins/genetics , Epilepsy/genetics , Epilepsy/diagnostic imaging , Epilepsy/physiopathology , Brain/diagnostic imaging , Brain/pathology , Brain/physiopathology , Male , Female , Loss of Function Mutation , Intellectual Disability/genetics , Intellectual Disability/diagnostic imaging , Intellectual Disability/pathology , Neuroimaging/methods , Child , Frameshift Mutation/genetics , Phenotype , Child, Preschool
4.
Cerebellum ; 23(4): 1736-1740, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38334877

ABSTRACT

KBG syndrome is a rare genetic disorder caused by heterozygous pathogenic variants in ANKRD11. Affected individuals have developmental delay, short stature, characteristic facial features, and other dysmorphic findings. To date, a spectrum of unspecific neuroradiological defects has been reported in KBG patients, such as cortical defects, white matter abnormalities, corpus callosum, and cerebellar vermis hypoplasia.Deep clinical and neuroradiological phenotyping and genotype of a patient presenting with mild cognitive and behavioral problems were obtained after written informed consent.We herein describe the first KBG patient presenting with cerebellar heterotopia, a heterogeneous malformation characterized by the presence of clusters of neurons within the white matter of cerebellar hemispheres.This novel association broadens the neuroradiological spectrum of KBG syndrome, and further prompts to investigate the potential functions of ANKRD11 in cerebellar development.


Subject(s)
Cerebellum , Humans , Cerebellum/diagnostic imaging , Cerebellum/abnormalities , Cerebellum/pathology , Intellectual Disability/genetics , Intellectual Disability/diagnostic imaging , Intellectual Disability/pathology , Abnormalities, Multiple/genetics , Abnormalities, Multiple/diagnostic imaging , Abnormalities, Multiple/pathology , Magnetic Resonance Imaging , Male , Facies , Kidney Diseases, Cystic/genetics , Kidney Diseases, Cystic/diagnostic imaging , Kidney Diseases, Cystic/pathology , Female , Neurocutaneous Syndromes/diagnostic imaging , Neurocutaneous Syndromes/genetics , Neurocutaneous Syndromes/pathology , Child , Choristoma/diagnostic imaging , Choristoma/pathology , Bone Diseases, Developmental , Tooth Abnormalities
5.
Am J Med Genet A ; 194(2): 211-217, 2024 Feb.
Article in English | MEDLINE | ID: mdl-37795572

ABSTRACT

Tatton-Brown-Rahman syndrome (TBRS) or DNMT3A-overgrowth syndrome is characterized by overgrowth and intellectual disability associated with minor dysmorphic features, obesity, and behavioral problems. It is caused by variants of the DNMT3A gene. We report four patients with this syndrome due to de novo DNMT3A pathogenic variants, contributing to a deeper understanding of the genetic basis and pathophysiology of this autosomal dominant syndrome. Clinical and magnetic resonance imaging assessments were also performed. All patients showed corpus callosum anomalies, small posterior fossa, and a deep left Sylvian fissure; as well as asymmetry of the uncinate and arcuate fascicles and marked increased cortical thickness. These results suggest that structural neuroimaging anomalies have been previously overlooked, where corpus callosum and brain tract alterations might be unrecognized neuroimaging traits of TBRS syndrome caused by DNMT3A variants.


Subject(s)
Abnormalities, Multiple , Intellectual Disability , Musculoskeletal Abnormalities , Humans , Intellectual Disability/diagnostic imaging , Intellectual Disability/genetics , DNA (Cytosine-5-)-Methyltransferases/genetics , DNA Methyltransferase 3A , Abnormalities, Multiple/genetics , Musculoskeletal Abnormalities/complications , Syndrome , Neuroimaging
6.
Neurol India ; 71(5): 980-983, 2023.
Article in English | MEDLINE | ID: mdl-37929438

ABSTRACT

Background: Mental retardation, X-linked, syndromic, Houge type (MRXSHG) is a form of mental retardation characterized by intellectual disability, speech and language impairments, and early-onset seizures. It has been recently recorded in Online Mendelian Inheritance in Man (OMIM), and only 10 cases have been reported in the literature so far. Objective: To highlight the novel neuroimaging findings in the pediatric X-linked intellectual disability with a missense mutation of connector enhancer of kinase suppressor of RAS2 (CNKSR2) gene. Material and Methods: We present a case of intellectual disability, refractory epilepsy, speech and language delay with subtle dysmorphism, and behavioral issues in an 11-year-old boy with novel neuroimaging findings in a CNKSR2 gene with missense mutation. Results: Brain MRI revealed involvement of the basal ganglia, predominantly the neostriatum, and along with the subependymal aspects with focal cavitations involving, especially the bilateral caudate heads. There was relative sparing of the globus pallidi and posterior putamina bilaterally. Whole-exome sequencing identified a hemizygous missense pathogenic variant in the CNKSR2 gene. The mother was found to be an asymptomatic carrier. Conclusion: This case report highlights the rare missense mutation in the CNKSR2 gene and abnormal neuroimaging findings, which further provide information about the phenotypic characteristics of X-linked syndromic intellectual disability.


Subject(s)
Intellectual Disability , Male , Humans , Child , Intellectual Disability/diagnostic imaging , Intellectual Disability/genetics , Intellectual Disability/pathology , Mutation, Missense , Phenotype , Neuroimaging , Magnetic Resonance Imaging , Adaptor Proteins, Signal Transducing/genetics
7.
Eur J Med Genet ; 66(10): 104825, 2023 Oct.
Article in English | MEDLINE | ID: mdl-37659595

ABSTRACT

Cholesterol is essential in the brain from the earliest stages of embryonic development. Disruption of cholesterol synthesis pathways that leads to cholesterol deficiency underlies a few syndromes, including desmosterolosis and Smith-Lemli-Opitz syndrome. In both syndromes, brain anomalies can occur. The LSS gene encodes lanosterol synthase (LSS), an important enzyme in the cholesterol biosynthesis pathway. Biallelic pathogenic variants in this gene cause alopecia-intellectual disability type 4 syndrome (APMR4, MIM 618840), a rare autosomal recessive disorder. Here, we describe two new LSS variants (c.1016C > T; p. Ser339Leu and c.1522G > C; p. Gly508Arg) found in a compound heterozygous fetus diagnosed prenatally with brain abnormalities by ultrasound scanning. Two of his siblings from the same parents also harbored these variants. Both siblings had alopecia, mild intellectual disability, autism spectrum disorder, and cataracts. To the best of our knowledge, this case represents the first prenatal diagnosis of APMR4 first suspected by ultrasound. In addition, the phenotypic features of the siblings are extensive compared with those described in previous reports and include abnormal corpus callosum, cataracts, alopecia, and developmental delay.


Subject(s)
Autism Spectrum Disorder , Cataract , Intellectual Disability , Pregnancy , Female , Humans , Intellectual Disability/diagnostic imaging , Intellectual Disability/genetics , Prenatal Diagnosis , Alopecia/genetics , Cholesterol/genetics , Cholesterol/metabolism
8.
Eur J Med Genet ; 66(11): 104855, 2023 Nov.
Article in English | MEDLINE | ID: mdl-37758165

ABSTRACT

ADNP syndrome, also known as the Helsmoortel-Van der Aa syndrome (HVDAS), is a neurodevelopmental disorder characterized by hypotonia, developmental delay, and intellectual disability. Diagnosis is typically made postnatally, and little is known about prenatal presentation of the disorder. We report a child who presented with intrauterine growth restriction, proportionate microcephaly, and an abnormal skull shape on fetal ultrasound. Whole exome sequencing performed on amniotic fluid cells showed a de novo pathogenic variant in the ADNP gene, corresponding to a diagnosis of ADNP syndrome.


Subject(s)
Abnormalities, Multiple , Autistic Disorder , Intellectual Disability , Child , Humans , Intellectual Disability/diagnostic imaging , Intellectual Disability/genetics , Homeodomain Proteins/genetics , Nerve Tissue Proteins/genetics , Autistic Disorder/genetics , Abnormalities, Multiple/genetics , Rare Diseases
9.
Prenat Diagn ; 43(10): 1366-1369, 2023 09.
Article in English | MEDLINE | ID: mdl-37529930

ABSTRACT

Prenatal testing was performed in a 39-year-old Chinese pregnant woman referred for increased nuchal translucency measuring 5.7 mm. Non-invasive prenatal testing and SNP array study on amniotic fluid samples were normal. Whole exome sequencing (WES) was initiated further as the fetus had pericardial effusion of 1.2 mm, thickened myocardium over the right ventricular lateral wall and aberrant right subclavian artery. A detailed fetal echocardiogram also revealed persistent left superior vena cava and dilated coronary sinus at 20 weeks. From whole exome sequencing of the trio, a de novo heterozygous variant NM_005359.5(SMAD4): c.1499T>C (p.Ile500Thr) was detected. This pathogenic variant has been reported in the postnatal case cohort of Myhre syndrome. This condition is characterized by facial dysmorphism, intellectual disability, hearing loss, skeletal abnormalities and potential life threatening respiratory or cardiovascular manifestations. Termination of pregnancy was performed at 23 weeks. Small chins, pre-axial polydactyly, brachydactyly and clinodactyly were noted in the abortus. Ultrasound findings of increased nuchal translucency, thickened myocardium and pericardial effusion prompted further genetic evaluation for the prenatal diagnosis of Myhre syndrome by whole exome sequencing.


Subject(s)
Heart Defects, Congenital , Intellectual Disability , Pericardial Effusion , Pregnancy , Female , Humans , Adult , Intellectual Disability/diagnostic imaging , Intellectual Disability/genetics , Nuchal Translucency Measurement , Vena Cava, Superior , Prenatal Diagnosis , Ultrasonography, Prenatal , Smad4 Protein/genetics
10.
J Alzheimers Dis ; 95(1): 213-225, 2023.
Article in English | MEDLINE | ID: mdl-37482997

ABSTRACT

BACKGROUND: Trisomy 21 causes Down syndrome (DS) and is a recognized cause of early-onset Alzheimer's disease (AD). OBJECTIVE: The current study sought to determine if premorbid intellectual disability level (ID) was associated with variability in age-trajectories of AD biomarkers and cognitive impairments. General linear mixed models compared the age-trajectory of the AD biomarkers PET Aß and tau and cognitive decline across premorbid ID levels (mild, moderate, and severe/profound), in models controlling trisomy type, APOE status, biological sex, and site. METHODS: Analyses involved adults with DS from the Alzheimer's Biomarkers Consortium-Down Syndrome. Participants completed measures of memory, mental status, and visuospatial ability. Premorbid ID level was based on IQ or mental age scores prior to dementia concerns. PET was acquired using [11C] PiB for Aß, and [18F] AV-1451 for tau. RESULTS: Cognitive data was available for 361 participants with a mean age of 45.22 (SD = 9.92) and PET biomarker data was available for 154 participants. There was not a significant effect of premorbid ID level by age on cognitive outcomes. There was not a significant effect of premorbid ID by age on PET Aß or on tau PET. There was not a significant difference in age at time of study visit of those with mild cognitive impairment-DS or dementia by premorbid ID level. CONCLUSION: Findings provide robust evidence of a similar time course in AD trajectory across premorbid ID levels, laying the groundwork for the inclusion of individuals with DS with a variety of IQ levels in clinical AD trials.


Subject(s)
Alzheimer Disease , Cognitive Dysfunction , Down Syndrome , Intellectual Disability , Humans , Alzheimer Disease/complications , Alzheimer Disease/diagnostic imaging , Alzheimer Disease/psychology , Down Syndrome/complications , Down Syndrome/diagnostic imaging , Down Syndrome/psychology , Intellectual Disability/complications , Intellectual Disability/diagnostic imaging , Intellectual Disability/psychology , Cognitive Dysfunction/psychology , Biomarkers , Amyloid beta-Peptides , tau Proteins , Positron-Emission Tomography
11.
Am J Med Genet A ; 191(9): 2346-2355, 2023 09.
Article in English | MEDLINE | ID: mdl-37350176

ABSTRACT

The Koolen-de Vries syndrome (KdVS) is a multisystem disorder characterized by developmental delay, intellectual disability, characteristic facial features, epilepsy, cardiovascular and urogenital malformations, and various musculoskeletal disorders. Scoliosis is a common feature. The aim of this study is to fill the gap in the current knowledge about scoliosis in individuals with KdVS and to provide recommendations for management and follow-up. In total, 54 individuals with KdVS were included in the study, with a mean age of 13.6 years (range 1.9-38.8 years). Spine radiographs, MR scans, and corresponding radiology reports were analyzed retrospectively for scoliosis and additional anomalies. The presence of scoliosis-related clinical conditions was assessed in participants' medical records and by use of a parent survey. Scoliosis was present in 56% of the participants (30/54) with a mean age of onset of 10.6 years and curve progression during the growth spurt. Prevalence at age 6, 10, and 18 years was, respectively, 9%, 41%, and 65%. Most participants were diagnosed with a single curve (13/24, 54%), of which five participants had a long C-curve type scoliosis. No significant risk factors for development of scoliosis could be identified. Severity was mostly classified as mild, although 29% (7/24) of the curves were larger than 30° at last follow-up. Bracing therapy was received in 13% (7/54), and surgical spinal fusion was warranted in 6% (3/54). Remarkably, participants with scoliosis received less often physical therapy compared to participants without scoliosis (P = 0.002). Scoliosis in individuals with KdVS should be closely monitored and radiologic screening for scoliosis and vertebrae abnormalities is recommended at diagnosis of KdVS, and the age of 10 and 18 years.


Subject(s)
Abnormalities, Multiple , Intellectual Disability , Scoliosis , Humans , Infant , Child, Preschool , Child , Adolescent , Young Adult , Adult , Intellectual Disability/diagnostic imaging , Intellectual Disability/epidemiology , Scoliosis/diagnostic imaging , Scoliosis/epidemiology , Retrospective Studies , Abnormalities, Multiple/diagnosis
12.
Seizure ; 110: 126-135, 2023 Aug.
Article in English | MEDLINE | ID: mdl-37356182

ABSTRACT

The objective of this study is to analyze the role of dehydrodolichyl diphosphate synthase (DHDDS), a crucial enzyme in the mevalonate pathway, and its encoded mutations in the onset of developmental delay and seizures, with or without movement abnormalities. Its genotype-phenotype characteristics are still inconclusive. We analyzed the clinical characteristics of epilepsy, and neurodevelopmental and motor disorders related to DHDDS gene mutations and report the genotype-phenotype characteristics of a child with epilepsy caused by DHDDS gene mutation, providing a summary and a statistical analysis of epilepsy cases associated with DHDDS gene mutation up until February 2022. METHODS: Using "DHDDS; epilepsy; neurodevelopmental disorder" as the keywords, the literature relevant to DHDDS gene mutations up until February 2022 was reviewed. A total of 25 cases were retrieved, among which 21 cases with complete data were included in the chi-squared test. The clinical characteristics of DHDDS gene-related cases were summarized and analyzed. RESULTS: The onset of epilepsy caused by mutations of the DHDDS gene typically occurs during infancy. Predominantly, the mutation occurs in the locus of c.632G>A p.R211Q. Myoclonus is frequently the initial manifestation of epilepsy; it frequently coexists with neurodevelopmental disorder and intellectual disability, and patients have no specific type of motor disorder. Cranial magnetic resonance imaging (MRI) reveals no abnormalities, whereas electroencephalogram (EEG) frequently exhibits abnormalities. Valproic acid (VPA) yields good curative effects. CONCLUSION: Mutations in the DHDDS gene are associated with congenital glycosylation disorder, autosomal recessive retinitis pigmentosa, and epilepsy. According to statistical analysis using the chi-squared test, for pediatric patients with mutations in this gene locus, most of the epilepsy types are myoclonic epilepsies with intellectual disability and neurodevelopmental disorders. They have normal brain MRIs and abnormal EEGs. VPA produces beneficial therapeutic results and the differences are all statistically significant. The current diagnosis still relies on next-generation sequencing or whole-exome sequencing.


Subject(s)
Epilepsy , Intellectual Disability , Motor Disorders , Neurodevelopmental Disorders , Humans , Intellectual Disability/diagnostic imaging , Intellectual Disability/genetics , Mutation/genetics , Neurodevelopmental Disorders/diagnostic imaging , Neurodevelopmental Disorders/genetics , Epilepsy/diagnostic imaging , Epilepsy/drug therapy , Epilepsy/genetics , Phenotype
13.
J Neuromuscul Dis ; 10(4): 483-492, 2023.
Article in English | MEDLINE | ID: mdl-37182895

ABSTRACT

BACKGROUND: LAMA2-related muscular dystrophy is a disorder that causes muscle weakness and varies in severity, from a severe, congenital type to a milder, late-onset form. However, the disease does not only affect the muscles, but has systemic involvement and can lead to alterations such as brain malformation, epilepsy and intellectual disability. OBJECTIVE: Describe the frequency of cortical malformations, epilepsy and intellectual disability in LAMA2-RD in a Brazilian cohort and correlate the neurological findings to genetic and motor function. METHODS: This is an observational study of 52 LAMA2-RD patients, who were divided into motor function subgroups and compared based on brain MRI findings, epilepsy, intellectual disability, and type of variants and variant domains. RESULTS: 44 patients (84.6%) were only able to sit, and 8 patients (15.4%) were able to walk. 10 patients (19.2%) presented with cortical malformations (polymicrogyria, lissencephaly-pachygyria, and cobblestone),10 patients (19.2%) presented with epilepsy, and 8 (15.4%) had intellectual disability. CNS manifestations correlated with a more severe motor phenotype and none of the patients able to walk presented with cortical malformation or epilepsy. There was a relation between gene variants affecting the laminin-α2 LG-domain and the presence of brain malformation (P = 0.016). There was also a relation between the presence of null variants and central nervous system involvement. A new brazilian possible founder variant was found in 11 patients (21,15%) (c.1255del; p. Ile419Leufs*4). CONCLUSION: Cortical malformations, epilepsy and intellectual disability are more frequent among LAMA2-RD patients than previously reported and correlate with motor function severity and the presence of variants affecting the laminin-α2 LG domain. This brings more insight fore phenotype-genotype correlations, shows the importance of reviewing the brain MRI of patients with LAMA2-RD and allows greater attention to the risk of brain malformation, epilepsy, and intellectual disability in those patients with variants that affect the LG domain.


Subject(s)
Epilepsy , Intellectual Disability , Humans , Brain/diagnostic imaging , Epilepsy/diagnostic imaging , Epilepsy/genetics , Genotype , Intellectual Disability/diagnostic imaging , Intellectual Disability/genetics , Laminin/genetics , Magnetic Resonance Imaging , Phenotype
14.
Int J Dev Neurosci ; 83(4): 368-373, 2023 Jun.
Article in English | MEDLINE | ID: mdl-37186309

ABSTRACT

BACKGROUND: Warburg Micro (WARBM) syndrome is a rare heterogeneous recessive genetic disorder characterized by ocular, neurological, and endocrine problems. To date, disease-causing variants in four genes have been identified to cause this syndrome; of these, RAB3GAP1 variants are the most frequent. Very little is known about WARBM syndrome in rural populations. OBJECTIVES: This study aims to investigate the genetics underpinnings of WARBM syndrome in a Pashtun family with two patients from Pakistan. The patients presented with spastic diplegia, severe intellectual disability, microphthalmia, microcornea, congenital cataracts, optic atrophy, and hypogonadism. METHODS: Magnetic resonance imaging (MRI) analysis revealed pronounced cerebral atrophy including corpus callosum hypoplasia and polymicrogyria. Exome sequencing and subsequent filtering identified a novel homozygous missense variant NM_001172435: c.2891A>G, p.Gln964Arg in the RAB3GAP1 gene. The variant was validated, and its segregation confirmed, by Sanger sequencing. RESULTS: Multiple prediction tools assess this variant to be damaging, and structural analysis of the protein shows that the mutant amino acid residue affects polar contact with the neighboring atoms. It is extremely rare and is absent in all the public databases. Taken together, these observations suggest that this variant underlies Micro syndrome in our family and is extremely important for management and family planning. CONCLUSIONS: Identification of this extremely rare variant extends the mutations spectrum of Micro syndrome. Screening more families, especially in underrepresented populations, will help unveil the mutation spectrum underlying this syndrome.


Subject(s)
Cataract , Hypogonadism , Intellectual Disability , Optic Atrophy , Humans , Intellectual Disability/diagnostic imaging , Intellectual Disability/genetics , Pakistan , Exome Sequencing , rab3 GTP-Binding Proteins/genetics , rab3 GTP-Binding Proteins/metabolism , Optic Atrophy/diagnostic imaging , Optic Atrophy/genetics , Hypogonadism/diagnostic imaging , Hypogonadism/genetics , Cataract/diagnostic imaging , Cataract/genetics , Mutation/genetics
15.
J Med Genet ; 60(2): 204-211, 2023 02.
Article in English | MEDLINE | ID: mdl-35477554

ABSTRACT

BACKGROUND: Dyggve-Melchior-Clausen dysplasia (DMC) and Smith-McCort dysplasia (SMC types 1 and 2) are rare spondyloepimetaphyseal dysplasias with identical radiological findings. The presence of intellectual disability in DMC and normal intellect in SMC differentiates the two. DMC and SMC1 are allelic and caused by homozygous or compound heterozygous variants in DYM. SMC2 is caused by variations in RAB33B. Both DYM and RAB33B are important in intravesicular transport and function in the Golgi apparatus. METHODS: Detailed clinical phenotyping and skeletal radiography followed by molecular testing were performed in all affected individuals. Next-generation sequencing and Sanger sequencing were used to confirm DYM and RAB33B variants. Sanger sequencing of familial variants was done in all parents. RESULTS: 24 affected individuals from seven centres are described. 18 had DMC and 6 had SMC2. Parental consanguinity was present in 15 of 19 (79%). Height <3 SD and gait abnormalities were seen in 20 and 14 individuals, respectively. The characteristic radiological findings of lacy iliac crests and double-humped vertebral bodies were seen in 96% and 88% of the affected. Radiological findings became attenuated with age. 23 individuals harboured biallelic variants in either DYM or RAB33B. Fourteen different variants were identified, out of which 10 were novel. The most frequently occurring variants in this group were c.719 C>A (3), c.1488_1489del (2), c.1484dup (2) and c.1563+2T>C (2) in DYM and c.400C>T (2) and c.186del (2) in RAB33B. The majority of these have not been reported previously. CONCLUSION: This large cohort from India contributes to the increasing knowledge of clinical and molecular findings in these rare 'Golgipathies'.


Subject(s)
Dwarfism , Intellectual Disability , Osteochondrodysplasias , Humans , Intellectual Disability/diagnostic imaging , Intellectual Disability/genetics , Mutation , Osteochondrodysplasias/diagnostic imaging , Osteochondrodysplasias/genetics , Dwarfism/diagnostic imaging , Dwarfism/genetics
16.
Comput Biol Med ; 147: 105803, 2022 08.
Article in English | MEDLINE | ID: mdl-35809411

ABSTRACT

At present, the assessment of mental retardation is mainly based on clinical interview, which requires the participation of experienced psychiatrist and is laborious. Studies have shown that there are correlations between mental retardation and abnormal behaviors (such as, hyperkinetic, tics, stereotypes, etc.). On the basis of this fact, a two stream Non-Local CNN-LSTM network has been proposed to learn the features of upper body behavior and facial expression of patients, thus, to achieve the preliminary screening of mental retardation. Specifically, RGB and optical flow are extracted separately from interview videos, and a two stream network based on contribution mechanism is designed to effectively fuse the information of two kinds of images, which may update the network in a new approach of alternating iteration training to find the optimal model. Besides, by introducing non-local mechanism and adopting it to the network, the global feature sensing can be established more effectively to reduce the background interference for video clip in a short time zone. Experiments on clinical video dataset show that the performance of proposed model is better than other prevalent deep learning methods of behavioral feature learning, the accuracy reaches 89.15% in basic experiment, and is further improved to 89.52% in the supplementary experiment. Furthermore, the experimental results show that this method still has a lot of room for improvement. In general, our work indicates that the proposed model has potential value for the clinical diagnosis and screening of mental retardation.


Subject(s)
Intellectual Disability , Neural Networks, Computer , Humans , Intellectual Disability/diagnostic imaging
17.
Cogn Behav Neurol ; 35(3): 221-226, 2022 09 01.
Article in English | MEDLINE | ID: mdl-35766809

ABSTRACT

Microarray-based techniques are an important testing method in etiological studies of intellectual disability and autism spectrum disorder. Interstitial deletion in the p11-p12 region of chromosome 10 is rare, having been reported in just 12 cases to date. Intellectual disability associated with the WAC gene in this region is referred to as DeSanto-Shinawi syndrome . Although all individuals with p11-p12 region of chromosome 10 deletion share a common phenotype involving intellectual disability and dysmorphic features, individuals with DeSanto-Shinawi syndrome usually do not experience the cardiac and neurologic abnormalities or cryptorchidism associated with a 10p11-p12 deletion. With this case report, we aim to expand the phenotypic spectrum of 10p11-p12 deletion. Our patient was a 9-year-old boy with intellectual disability, autism symptoms, dysmorphic features, and behavioral abnormalities. He had no cardiac problems or neurologic symptoms such as hypotonia, feeding difficulties, or seizures. However, he presented cryptorchidism in addition to symptoms that are consistent with DeSanto-Shinawi syndrome. Array comparative genomic hybridization of genomic DNA isolated from a peripheral blood sample revealed a heterozygous deletion in 10p11.23-p12.1, which contains the WAC gene. We discuss our case in the context of a literature review of candidate genes. It is still difficult to establish genotype-phenotype correlations for neurologic, cardiac, and visual symptoms, and cryptorchidism, in individuals with a 10p11-p12 deletion. As more individuals are diagnosed with deletion in this chromosomal region, the associated phenotypes will become clearer.


Subject(s)
Autism Spectrum Disorder , Cryptorchidism , Intellectual Disability , Adaptor Proteins, Signal Transducing/genetics , Autism Spectrum Disorder/complications , Autism Spectrum Disorder/diagnostic imaging , Autism Spectrum Disorder/genetics , Chromosome Deletion , Comparative Genomic Hybridization , Cryptorchidism/complications , Cryptorchidism/genetics , Humans , Intellectual Disability/diagnostic imaging , Intellectual Disability/genetics , Male , Neuroimaging , Phenotype
18.
Clin Genet ; 102(2): 123-129, 2022 08.
Article in English | MEDLINE | ID: mdl-35443069

ABSTRACT

Six individuals of consanguineous Bedouin kindred presented at infancy with an autosomal recessive syndrome of severe global developmental delay, positive pyramidal signs, unique dysmorphism, skeletal abnormalities, and severe failure to thrive with normal birth weights. Patients had a profound intellectual disability and cognitive impairment with almost no acquired developmental milestones by 12 months. Early-onset axial hypotonia evolved with progressive muscle weakness, reduced muscle tone, and hyporeflexia. Craniofacial dysmorphism consisted of a triangular face with a prominent forehead and midface hypoplasia. Magnetic resonance imaging (MRI) demonstrated thinning of the corpus callosum and paucity of white matter. Genome-wide linkage analysis identified a single ~4 Mbp disease-associated locus on chromosome 7q21.13-q21.3 (LOD score>5). Whole-exome and genome sequencing identified no nonsynonymous pathogenic biallelic variants in any of the genes within this locus. Following the exclusion of partially resembling syndromes, we now describe a novel autosomal recessive syndrome mapped to a ~4Mbp locus on chromosome 7.


Subject(s)
Intellectual Disability , Muscle Hypotonia , Chromosomes, Human, Pair 3 , Corpus Callosum/pathology , Failure to Thrive , Humans , Intellectual Disability/diagnostic imaging , Intellectual Disability/genetics , Intellectual Disability/pathology , Muscle Hypotonia/genetics , Muscle Hypotonia/pathology , Syndrome
19.
J Dev Behav Pediatr ; 43(6): e419-e422, 2022 08 01.
Article in English | MEDLINE | ID: mdl-35385430

ABSTRACT

OBJECTIVE: Causative variants in SETD1B , encoding a lysine-specific methyltransferase, have recently been associated with a neurodevelopmental phenotype encompassing intellectual disability, autistic features, pronounced language delay, and epilepsy. It has been noted that long-term and deep phenotype data are needed to further delineate this rare condition. METHODS: In this study, we provide an in-depth clinical characterization with long-term follow-up and trio exome sequencing findings to describe one additional individual affected by SETD1B -related disorder. The diagnostic workup was complemented by a functional magnetic resonance imaging (fMRI) study. RESULTS: We report a 24-year-old male individual with an early-onset neurodevelopmental disorder with epilepsy due to the de novo missense variant c.5699A>G, p.(Tyr1900Cys) in SETD1B (NM_015048.1). He exhibited delayed speech development, autism spectrum disorder, and early-onset epilepsy with absence and generalized tonic-clonic seizures. Despite profoundly impaired communication skills, ongoing improvements regarding language production have been noted in adulthood. fMRI findings demonstrate abnormal language activation and resting-state connectivity structure. CONCLUSION: Our report expands the previously delineated phenotype of SETD1B -related disorder and provides novel insights into underlying disease mechanisms.


Subject(s)
Connectome , Epilepsy , Histone-Lysine N-Methyltransferase , Neurodevelopmental Disorders , Autism Spectrum Disorder/complications , Autism Spectrum Disorder/diagnostic imaging , Autism Spectrum Disorder/genetics , Epilepsy/diagnostic imaging , Epilepsy/genetics , Humans , Intellectual Disability/diagnostic imaging , Intellectual Disability/genetics , Male , Neurodevelopmental Disorders/diagnostic imaging , Neurodevelopmental Disorders/genetics , Phenotype
20.
Genes (Basel) ; 13(3)2022 02 25.
Article in English | MEDLINE | ID: mdl-35327983

ABSTRACT

Here, we report a consanguineous family harboring a novel homozygous frame-shift mutation in ASPM leading to a truncation of the ASPM protein after amino acid position 1830. The phenotype of the patients was associated with microcephaly, epilepsy, and behavioral and cognitive deficits. Despite the obvious genetic similarity, the affected patients show a considerable phenotypic heterogeneity regarding the degree of mental retardation, presence of epilepsy and MRI findings. Interestingly, the degree of mental retardation and the presence of epilepsy correlates well with the severity of abnormalities detected in brain MRI. On the other hand, we detected no evidence for substantial nonsense-mediated ASPM transcript decay in blood samples. This indicates that other factors than ASPM expression levels are relevant for the variability of structural changes in brain morphology seen in patients with primary hereditary microcephaly caused by ASPM mutations.


Subject(s)
Epilepsy , Intellectual Disability , Microcephaly , Biological Variation, Population , Cognition , Cognition Disorders/genetics , Epilepsy/genetics , Humans , Intellectual Disability/diagnostic imaging , Intellectual Disability/genetics , Microcephaly/genetics , Mutation , Nerve Tissue Proteins/genetics
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