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1.
Int J Mol Sci ; 21(9)2020 Apr 25.
Article in English | MEDLINE | ID: mdl-32344926

ABSTRACT

AIMS: Coxsackievirus B3 (CVB3) is known to be an important cause of myocarditis and dilated cardiomyopathy. Enterovirus-2C (E2C) is a viral RNA helicase. It inhibits host protein synthesis. Based on these facts, we hypothesize that the inhibition of 2C may suppress virus replication and prevent enterovirus-mediated cardiomyopathy. METHODS AND RESULTS: We generated a chemically modified enterovirus-2C inhibitor (E2CI). From the in vitro assay, E2CI was showed strong antiviral effects. For in vivo testing, mice were treated with E2CI intraperitoneally injected daily for three consecutive days at a dose of 8mg/kg per day, after CVB3 post-infection (p.i) (CVB3 + E2CI, n = 33). For the infected controls (CVB3 only, n = 35), mice were injected with PBS (phosphate buffered saline) in a DBA/2 strain to establish chronic myocarditis. The four-week survival rate of E2CI-treated mice was significantly higher than that of controls (92% vs. 71%; p < 0.05). Virus titers and myocardial damage were significantly reduced in the E2CI treated group. In addition, echocardiography indicated that E2CI administration dramatically maintained mouse heart function compared to control at day 28 p.i chronic stage (LVIDD, 3.1 ± 0.08 vs. 3.9 ± 0.09, p < 0.01; LVDS, 2.0 ± 0.07 vs. 2.5 ± 0.07, p < 0.001; FS, 34.8 ± 1.6% vs. 28.5 ± 1.5%; EF, 67. 9 ± 2.9% vs. 54.7 ± 4.7%, p < 0.05; CVB3 + E2CI, n = 6 vs. CVB3, n = 4). Moreover, E2CI is effectively worked in human iPS (induced pluripotent stem cell) derived cardiomyocytes. CONCLUSION: Enterovirus-2C inhibitor (E2CI) was significantly reduced viral replication, chronic myocardium damage, and CVB3-induced mortality in DBA/2 mice. These results suggested that E2CI is a novel therapeutic agent for the treatment of enterovirus-mediated diseases.


Subject(s)
Antiviral Agents/pharmacology , Coxsackievirus Infections/drug therapy , Enterovirus B, Human/enzymology , Induced Pluripotent Stem Cells/drug effects , Myocarditis/prevention & control , Myocytes, Cardiac/drug effects , RNA Helicases/antagonists & inhibitors , Viral Proteins/antagonists & inhibitors , Animals , Antiviral Agents/chemical synthesis , Antiviral Agents/therapeutic use , Cardiomyopathy, Dilated/etiology , Cardiomyopathy, Dilated/prevention & control , Chronic Disease , Coxsackievirus Infections/complications , Enterovirus B, Human/drug effects , Enterovirus B, Human/physiology , HeLa Cells , Humans , Induced Pluripotent Stem Cells/virology , Luciferases, Renilla/analysis , Male , Mice , Mice, Inbred DBA , Myocarditis/etiology , Myocarditis/virology , Myocytes, Cardiac/pathology , Myocytes, Cardiac/virology , Oxadiazoles/pharmacology , Oxadiazoles/therapeutic use , Oxazoles/pharmacology , Oxazoles/therapeutic use , Recombinant Fusion Proteins/metabolism , Ventricular Dysfunction, Left/etiology , Ventricular Dysfunction, Left/prevention & control , Virus Replication/drug effects
2.
Biochem Biophys Res Commun ; 521(3): 674-680, 2020 01 15.
Article in English | MEDLINE | ID: mdl-31685208

ABSTRACT

Galectin-3 (Gal-3) is a multifunctional glycan-binding protein that participates in many pathophysiological events and has been described as a biomarker and potential therapeutic target for severe disorders, such as cancer. Several probes for Gal-3 or its ligands have been developed, however both the pathophysiological mechanisms and potential biomedical applications of Gal-3 remain not fully assessed. Molecular imaging using bioluminescent probes provides great sensitivity for in vivo and in vitro analysis for both cellular and whole multicellular organism tracking and target detection. Here, we engineered a chimeric molecule consisting of Renilla luciferase fused with mouse Gal-3 (RLuc-mGal-3). RLuc-mGal-3 preparation was highly homogenous, soluble, active, and has molecular mass of 65,870.95 Da. This molecule was able to bind to MKN45 cell surface, property which was inhibited by the reduction of Gal-3 ligands on the cell surface by the overexpression of ST6GalNAc-I. In order to obtain an efficient and stable delivery system, RLuc-mGal-3 was adsorbed to poly-lactic acid nanoparticles, which increased binding to MKN45 cells in vitro. Furthermore, bioluminescence imaging showed that RLuc-mGal-3 was able to indicate the presence of implanted tumor in mice, event drastically inhibited by the presence of lactose. This novel bioluminescent chimeric molecule offers a safe and highly sensitive alternative to fluorescent and radiolabeled probes with potential application in biomedical research for a better understanding of the distribution and fate of Gal-3 and its ligands in vitro and in vivo.


Subject(s)
Galectin 3/metabolism , Luciferases, Renilla/metabolism , Luminescent Agents/metabolism , Neoplasms/diagnostic imaging , Polysaccharides/metabolism , Animals , Cell Line, Tumor , Galectin 3/analysis , Galectin 3/genetics , Humans , Luciferases, Renilla/analysis , Luciferases, Renilla/genetics , Luminescent Agents/analysis , Male , Mice , Mice, Inbred BALB C , Neoplasms/metabolism , Optical Imaging , Polysaccharides/analysis , Protein Binding , Protein Engineering , Recombinant Fusion Proteins/analysis , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism
3.
Methods Mol Biol ; 2024: 137-152, 2019.
Article in English | MEDLINE | ID: mdl-31364047

ABSTRACT

The luciferase immunoprecipitation system (LIPS) assay is a liquid-phase immunoassay that quantitates antigen-specific serum antibodies by measuring luminescence emitted by the reporter enzyme Renilla luciferase (Ruc) fused to an antigen of interest. The LIPS assay can be utilized as a high-throughput and sensitive serological method for profiling serum antibodies recognizing diverse antigens. This chapter provides a detailed protocol for detecting human norovirus-specific serum antibodies with the LIPS assay.


Subject(s)
Antibodies/immunology , Luciferases/analysis , Norovirus/immunology , Humans , Immunoassay , Immunoprecipitation , Luciferases, Renilla/analysis
4.
Sci Rep ; 9(1): 10522, 2019 07 19.
Article in English | MEDLINE | ID: mdl-31324885

ABSTRACT

The outstanding potential of Extracellular Vesicles (EVs) in medicine, deserves a detailed study of the molecular aspects regulating their incorporation into target cells. However, because EV size lies below the limit of resolution of optical techniques, quantification together with discrimination between EV binding to the target cell and uptake is usually not completely achieved with current techniques. Human tetraspanins CD9 and CD63 were fused to a dual EGFP-Renilla-split tag. Subcellular localization and incorporation of these fusion proteins into EVs was assessed by western-blot and fluorescence microscopy. EV binding and uptake was measured using either a classical Renilla substrate or a cytopermeable one. Incubation of target cells expressing DSP2 with EVs containing the complementary DSP1 portion could not recover fluorescence or luciferase activity. However, using EVs carrying the fully reconstituted Dual-EGFP-Renilla protein and the cytopermeable Renilla luciferase substrate, we could distinguish EV binding from uptake. We provide proof of concept of the system by analysing the effect of different chemical inhibitors, demonstrating that this method is highly sensitive and quantitative, allowing a dynamic follow-up in a high-throughput scheme to unravel the molecular mechanisms of EV uptake in different biological systems.


Subject(s)
Extracellular Vesicles/metabolism , High-Throughput Screening Assays/methods , Tetraspanin 29/metabolism , Tetraspanin 30/metabolism , Biological Transport , Breast Neoplasms/pathology , Cell Line, Tumor , Female , Genes, Reporter , Green Fluorescent Proteins/analysis , Green Fluorescent Proteins/genetics , Humans , Imidazoles/metabolism , Luciferases, Renilla/analysis , Luciferases, Renilla/genetics , Luminescent Measurements , Nanoparticles , Pyrazines/metabolism , Recombinant Fusion Proteins/analysis , Recombinant Fusion Proteins/metabolism , Sensitivity and Specificity , Subcellular Fractions/chemistry , Tetraspanin 29/genetics , Tetraspanin 30/genetics
5.
Nucleic Acids Res ; 47(13): e75, 2019 07 26.
Article in English | MEDLINE | ID: mdl-30982889

ABSTRACT

The rapid development of CRISPR-Cas technologies brought a personalized and targeted treatment of genetic disorders into closer reach. To render CRISPR-based therapies precise and safe, strategies to confine the activity of Cas(9) to selected cells and tissues are highly desired. Here, we developed a cell type-specific Cas-ON switch based on miRNA-regulated expression of anti-CRISPR (Acr) proteins. We inserted target sites for miR-122 or miR-1, which are abundant specifically in liver and cardiac muscle cells, respectively, into the 3'UTR of Acr transgenes. Co-expressing these with Cas9 and sgRNAs resulted in Acr knockdown and released Cas9 activity solely in hepatocytes or cardiomyocytes, while Cas9 was efficiently inhibited in off-target cells. We demonstrate control of genome editing and gene activation using a miR-dependent AcrIIA4 in combination with different Streptococcus pyogenes (Spy)Cas9 variants (full-length Cas9, split-Cas9, dCas9-VP64). Finally, to showcase its modularity, we adapted our Cas-ON system to the smaller and more target-specific Neisseria meningitidis (Nme)Cas9 orthologue and its cognate inhibitors AcrIIC1 and AcrIIC3. Our Cas-ON switch should facilitate cell-specific activity of any CRISPR-Cas orthologue, for which a potent anti-CRISPR protein is known.


Subject(s)
CRISPR-Associated Protein 9/genetics , CRISPR-Cas Systems , Gene Editing/methods , Gene Expression Regulation , Transgenes , 3' Untranslated Regions/genetics , Binding Sites , CRISPR-Associated Protein 9/antagonists & inhibitors , CRISPR-Associated Protein 9/biosynthesis , Dependovirus/genetics , Enzyme Activation , Enzyme Induction , Genes, Reporter , HEK293 Cells , HeLa Cells , Hepatocytes/metabolism , Humans , Luciferases, Renilla/analysis , Luciferases, Renilla/genetics , MicroRNAs , Myocytes, Cardiac/metabolism , Organ Specificity , Protein Isoforms/antagonists & inhibitors
6.
Antiviral Res ; 157: 120-127, 2018 09.
Article in English | MEDLINE | ID: mdl-30057296

ABSTRACT

Recently, a newly emerged avian flavivirus, duck Tembusu virus (TMUV), was identified as the causative agent of a serious duck viral disease in Asia. Its rapid spread and expanded host range have raised substantial concerns regarding its potential threat to non-avian hosts, including humans. In this study, we report an infectious cDNA clone for a clinical strain CQW1 isolated from Southwest China, which is representative of the disease outbreak in the Chinese mainland. We generated a full-length cDNA clone pACYC FL-TMUV, which is infectious, and this cDNA clone-derived recombinant TMUV (rTMUV) showed comparative growth kinetics in both BHK21 cells and DEF cells compared with parental TMUV (pTMUV). In addition, rTMUV also showed the same high virulence in 9-day-old duck embryos as that in pTMUV, suggesting that rTMUV possessed similar properties to the natural virus both in vitro and in vivo. Based on the cDNA-clone, we first generated a reporter TMUV (TMUV-RLuc) carrying a Renilla luciferase (RLuc) gene. The luciferase kinetics of TMUV-RLuc were determined both in BHK21 and DEF cells. It seems that TMUV-RLuc grew well in vitro; however, the insertion of the RLuc gene attenuated viral replication in vitro. The higher viral titres of TMUV-RLuc were observed in BHK21 compared with that in DEF cells. The antiviral effects of exogenous-expressed duck RIG-I, MDA5, STING, MAVS, TBK1, IFNα and IFNγ were studied in vitro by using TMUV-RLuc. Our reverse genetics system will provide a multicomponent platform for the pathogenesis study of duck TMUV and the development of molecular countermeasures against duck TMUV infection.


Subject(s)
Drug Evaluation, Preclinical/methods , Flavivirus/genetics , Reverse Genetics/methods , Virology/methods , Animals , Antiviral Agents/isolation & purification , Antiviral Agents/pharmacology , Bird Diseases/epidemiology , Bird Diseases/virology , Cells, Cultured , China , Cricetinae , DNA, Complementary/genetics , DNA, Viral/genetics , Disease Outbreaks , Ducks , Flavivirus/drug effects , Flavivirus/isolation & purification , Flavivirus/pathogenicity , Flavivirus Infections/epidemiology , Flavivirus Infections/veterinary , Flavivirus Infections/virology , Genes, Reporter , Luciferases, Renilla/analysis , Luciferases, Renilla/genetics , Staining and Labeling , Survival Analysis , Virulence
7.
Org Biomol Chem ; 16(26): 4789-4792, 2018 07 04.
Article in English | MEDLINE | ID: mdl-29926875

ABSTRACT

To develop a photoactivatable bioluminescence imaging technique, a set of high and efficient photoactivatable substrates for Renilla luciferase has been well designed and synthesized. Surprisingly, all of them could release the free luciferin that presented robust bioluminescent signals ex vivo and in living animals after UV irradiation at 365 nm.


Subject(s)
Imidazoles/chemistry , Luciferases, Renilla/analysis , Luminescent Agents/chemistry , Optical Imaging , Pyrazines/chemistry , Animals , Imidazoles/chemical synthesis , Luciferases, Renilla/metabolism , Luminescent Agents/chemical synthesis , Luminescent Measurements , Mice , Mice, Nude , Molecular Structure , Neoplasms, Experimental/diagnostic imaging , Photochemical Processes , Pyrazines/chemical synthesis , Substrate Specificity , Ultraviolet Rays
8.
J Med Virol ; 90(9): 1524-1531, 2018 09.
Article in English | MEDLINE | ID: mdl-29718575

ABSTRACT

Hepatitis E virus (HEV), a member of the family Hepeviridae, causes both acute and chronic viral hepatitis. We have previously demonstrated that the stem-loop structure in the junction region (JR) of HEV genome plays a critical role in HEV replication. However, the function of the sequence bordering the JR, including the 3' terminus of open reading frame (ORF1), in HEV replication is unknown. In this study, a panel of HEV Renilla luciferase (Rluc) replicons containing various deletions at 5' or 3' termini of the JR was constructed to determine the effect of the deletions on HEV replication in Huh7 human liver cells. We showed that even a single nucleotide deletion at the 5' terminus of the JR abolished HEV replication, whereas deletions at the 3' terminus of the JR also decreased virus replication efficiency. Furthermore, we also constructed firefly luciferase and Rluc dual-reporter HEV replicons containing the 3' terminal ORF1 of various lengths and the JR inserted upstream of the Rluc reporter. A higher level of HEV replication was observed in cells transfected with replicons containing the 3' terminal ORF1 than that of the JR only replicon. We also showed that the ORF3 noncoding sequence along with the JR promoted a higher level of translation activity than that promoted by JR and the ORF2 noncoding sequence.


Subject(s)
Base Sequence , Genome, Viral , Hepatitis E virus/genetics , Hepatitis E virus/physiology , Open Reading Frames , RNA, Viral/genetics , Virus Replication , Artificial Gene Fusion , Cell Line , Genes, Reporter , Hepatocytes/virology , Humans , Luciferases, Renilla/analysis , Luciferases, Renilla/genetics , Nucleic Acid Conformation , Sequence Deletion
9.
Theranostics ; 7(4): 912-925, 2017.
Article in English | MEDLINE | ID: mdl-28382163

ABSTRACT

Flavivirus includes a large group of human pathogens with medical importance. Especially, neurotropic flaviviruses capable of invading central and peripheral nervous system, e.g. Japanese encephalitis virus (JEV) and Zika virus (ZIKV), are highly pathogenic to human and constitute major global health problems. However, the dynamic dissemination and pathogenesis of neurotropic flavivirus infections remain largely unknown. Here, using JEV as a model, we rationally designed and constructed a recombinant reporter virus that stably expressed Renilla luciferase (Rluc). The resulting JEV reporter virus (named Rluc-JEV) and parental JEV exhibited similar replication and infection characteristics, and the magnitude of Rluc activity correlated well with progeny viral production in vitro and in vivo. By using in vivo bioluminescence imaging (BLI) technology, we dissected the replication and dissemination dynamics of JEV infection in mice upon different inoculation routes. Interestingly, besides replicating in mouse brain, Rluc-JEV predominantly invaded the abdominal organs in mice with typical viscerotropism. Further tests in mice deficient in type I interferon (IFN) receptors demonstrated robust and prolonged viral replication in the intestine, spleen, liver, kidney and other abdominal organs. Combined with histopathological and immunohistochemical results, the host type I IFN signaling was evidenced as the major barrier to the viscerotropism and pathogenicity of this neurotropic flavivirus. Additionally, the Rluc-JEV platform was readily adapted for efficacy assay of known antiviral compounds and a live JE vaccine. Collectively, our study revealed abdominal organs as important targets of JEV infection in mice and profiled the unique viscerotropism trait controlled by the host type I IFN signaling. This in vivo visualization technology described here provides a powerful tool for testing antiviral agents and vaccine candidates for flaviviral infection.


Subject(s)
Encephalitis Virus, Japanese/physiology , Encephalitis, Japanese/pathology , Encephalitis, Japanese/virology , Host-Pathogen Interactions , Interferon Type I/metabolism , Signal Transduction , Viral Tropism , Animal Structures/virology , Animals , Antiviral Agents/metabolism , Cell Line , Disease Models, Animal , Encephalitis Virus, Japanese/immunology , Genes, Reporter , Luciferases, Renilla/analysis , Luciferases, Renilla/genetics , Luminescent Measurements , Mice , Staining and Labeling
10.
Methods Enzymol ; 588: 1-13, 2017.
Article in English | MEDLINE | ID: mdl-28237095

ABSTRACT

Macroautophagy (autophagy) is a dynamic intracellular degradation pathway. Monitoring the flux through the autophagy pathway is experimentally challenging but obviously a prerequisite for the proper investigation of the process. Here, we present an indirect autophagy flux assay based on monitoring the degradation of an autophagosome-associated fusion protein Rluc-LC3 by luminescence detection. The method is suitable for screening purposes with a high number of parallel samples and can be used for measurements in cell lysates as well as in living cells. The Rluc-LC3 assay has proven useful for the identification of genes, miRNAs, and small molecules that regulate autophagy flux in mammalian cells.


Subject(s)
Autophagy , Luciferases, Renilla/analysis , Animals , High-Throughput Screening Assays/methods , Humans , Luciferases, Renilla/metabolism , MCF-7 Cells , Recombinant Fusion Proteins/analysis , Recombinant Fusion Proteins/metabolism , Signal Transduction
11.
Theranostics ; 6(4): 594-609, 2016.
Article in English | MEDLINE | ID: mdl-26941850

ABSTRACT

Aberrant activation of the Src kinase is implicated in the development of a variety of human malignancies. However, it is almost impossible to monitor Src activity in an in vivo setting with current biochemical techniques. To facilitate the noninvasive investigation of the activity of Src kinase both in vitro and in vivo, we developed a genetically engineered, activatable bioluminescent reporter using split-luciferase complementation. The bioluminescence of this reporter can be used as a surrogate for Src activity in real time. This hybrid luciferase reporter was constructed by sandwiching a Src-dependent conformationally responsive unit (SH2 domain-Srcpep) between the split luciferase fragments. The complementation bioluminescence of this reporter was dependent on the Src activity status. In our study, Src kinase activity in cultured cells and tumor xenografts was monitored quantitatively and dynamically in response to clinical small-molecular kinase inhibitors, dasatinib and saracatinib. This system was also applied for high-throughput screening of Src inhibitors against a kinase inhibitor library in living cells. These results provide unique insights into drug development and pharmacokinetics/phoarmocodynamics of therapeutic drugs targeting Src signaling pathway enabling the optimization of drug administration schedules for maximum benefit. Using both Firefly and Renilla luciferase imaging, we have successfully monitored Src tyrosine kinase activity and Akt serine/threonine kinase activity concurrently in one tumor xenograft. This dual luciferase reporter imaging system will be helpful in exploring the complex signaling networks in vivo. The strategies reported here can also be extended to study and image other important kinases and the cross-talks among them.


Subject(s)
Genes, Reporter , Luciferases, Renilla/analysis , Luminescent Measurements , Neoplasms/diagnostic imaging , src-Family Kinases/analysis , Animals , Cell Line, Tumor , Heterografts , Luciferases, Renilla/genetics , Mice , Sequence Analysis, DNA
12.
J Virol Methods ; 231: 25-33, 2016 May.
Article in English | MEDLINE | ID: mdl-26898957

ABSTRACT

Human immunodeficiency virus type 1 (HIV-1) reporter cell lines are critical tools for drug development. However, one disadvantage of HIV-1 reporter cell lines is that reductions in reporter gene activity need to be normalized to cytotoxicity, i.e., live cell numbers. Here, we developed a dual luciferase assay based on a R. reniformis luciferase (hRLuc)-expressing R5-type HIV-1 (NLAD8-hRLuc) and a CEM cell line expressing CCR5 and firefly luciferase (R5CEM-FiLuc). The NLAD8-hRLuc reporter virus was replication competent in peripheral blood mononuclear cells. The level of hRLuc was correlated with p24 antigen levels (p<0.001, R=0.862). The target cell line, R5CEM-FiLuc, stably expressed the firefly luciferase (FiLuc) reporter gene and allowed the simultaneous monitoring of compound cytotoxicity. The dual reporter assay combining a NLAD8-hRLuc virus with R5CEM-FiLuc cells permitted the accurate determination of drug susceptibility for entry, reverse transcriptase, integrase, and protease inhibitors at different multiplicities of infection. This dual reporter assay provides a rapid and direct method for the simultaneous monitoring of HIV infection and cell viability.


Subject(s)
Anti-HIV Agents/pharmacology , Genes, Reporter , HIV-1/growth & development , Luciferases, Firefly/analysis , Luciferases, Renilla/analysis , Cell Line , Cell Survival , HIV-1/drug effects , Luciferases, Firefly/genetics , Luciferases, Renilla/genetics
13.
Antiviral Res ; 128: 49-56, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26868874

ABSTRACT

Classical swine fever (CSF) caused by classical swine fever virus (CSFV) is a highly contagious and often fatal disease of pigs, which leads to significant economic losses in many countries. Viral infection can induce the production of interferons (IFNs), giving rise to the transcription of hundreds of IFN-stimulated genes (ISGs) to exert antiviral effects. Although numerous ISGs have been identified to possess antiviral activities against different viruses, rare anti-CSFV ISGs have been reported to date. In this study, to screen anti-CSFV ISGs, twenty-one ISGs reported previously were individually knocked down using small interfering RNAs (siRNAs) followed by infection with a reporter CSFV expressing Renilla luciferase (Rluc). As a result, four novel anti-CSFV ISGs were identified, including natural-resistance-associated macrophage protein 1 (NRAMP1), cytosolic 5'-nucleotidase III A (NT5C3A), chemokine C-X-C motif ligand 10 (CXCL10), and 2'-5'-oligoadenylate synthetase 1 (OAS1), which were further verified to exhibit antiviral activities against wild-type CSFV. We conclude that the reporter virus is a useful tool for efficient screening anti-CSFV ISGs.


Subject(s)
Classical Swine Fever Virus/physiology , Classical Swine Fever/genetics , Classical Swine Fever/immunology , Gene Expression Regulation , Interferons/immunology , 2',5'-Oligoadenylate Synthetase/analysis , 2',5'-Oligoadenylate Synthetase/genetics , 2',5'-Oligoadenylate Synthetase/immunology , Animals , Cation Transport Proteins/genetics , Cation Transport Proteins/immunology , Cell Line , Chemokine CXCL10/analysis , Chemokine CXCL10/genetics , Chemokine CXCL10/immunology , Luciferases, Renilla/analysis , Luciferases, Renilla/genetics , RNA, Small Interfering/genetics , Swine
14.
Virology ; 484: 313-322, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26149721

ABSTRACT

The multi-domain non-structural protein 3 of SARS-coronavirus is a component of the viral replication/transcription complex (RTC). Among other domains, it contains three sequentially arranged macrodomains: the X domain and subdomains SUD-N as well as SUD-M within the "SARS-unique domain". The X domain was proposed to be an ADP-ribose-1"-phosphatase or a poly(ADP-ribose)-binding protein, whereas SUD-NM binds oligo(G)-nucleotides capable of forming G-quadruplexes. Here, we describe the application of a reverse genetic approach to assess the importance of these macrodomains for the activity of the SARS-CoV RTC. To this end, Renilla luciferase-encoding SARS-CoV replicons with selectively deleted macrodomains were constructed and their ability to modulate the RTC activity was examined. While the SUD-N and the X domains were found to be dispensable, the SUD-M domain was crucial for viral genome replication/transcription. Moreover, alanine replacement of charged amino-acid residues of the SUD-M domain, which are likely involved in G-quadruplex-binding, caused abrogation of RTC activity.


Subject(s)
Severe acute respiratory syndrome-related coronavirus/physiology , Transcription, Genetic , Viral Nonstructural Proteins/metabolism , Virus Replication , Amino Acid Substitution , Genes, Reporter , Luciferases, Renilla/analysis , Luciferases, Renilla/genetics , Protein Structure, Tertiary , Reverse Genetics , Severe acute respiratory syndrome-related coronavirus/genetics , Sequence Deletion , Staining and Labeling , Viral Nonstructural Proteins/genetics
15.
AIDS Res Hum Retroviruses ; 31(12): 1278-96, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26101895

ABSTRACT

We previously developed replication-competent reporter HIV-1 (referred to herein as LucR.T2A reporter viruses), utilizing a "ribosome skipping" T2A peptide strategy to link Renilla luciferase (LucR) with Nef expression. The demonstrated utility for HIV-1 vaccine and transmission study applications included measurement of neutralizing antibody (NAb) activity in vaccine sera, improved cell-mediated virus inhibition assays, such as T cell-mediated virus inhibition and antibody-dependent cell-mediated cytotoxicity (ADCC) assays, and humanized mouse models. Herein, we extend our prior work and introduce reporter virus technology for applications that require fully functional Nef. We demonstrate that in CD4(+) T cells productively infected with LucR.T2A reporter viruses, T2A peptide-driven Nef expression and function, such as down-regulation of surface CD4 and MHC-I, were impaired. We overcame this limitation of LucR.T2A reporter viruses and achieved physiological Nef expression and function by engineering novel LucR reporter HIV-1 comprising 11 different internal ribosome entry site (IRES) elements chosen for size and relative activity. A range of Nef expression was observed in 293T cells transfected with the different LucR.IRES reporter virus constructs. Iteratively, we identified IRES reporter genomes that expressed Nef closest to physiological levels and produced virus with infectivity, titers, and replication kinetics similar to nonreporter viruses. Our results demonstrated that LucR reporter activity was stable over multiple replication cycles in peripheral blood mononuclear cells (PBMCs). Furthermore, we analyzed Nef functionality, i.e., down-modulation of MHC-I and CD4, following infection of T cell lines and PBMCs. Unlike LucR.T2A reporter virus, one of the redesigned LucR.IRES reporter viruses [containing the modified encephalomyocarditis virus (EMCV) 6ATR IRES element, "6ATRi"] demonstrated Nef expression and function similar to parental "nonreporter" virus. In a previously validated (nef-independent) T cell-based NAb neutralization assay, LucR.6ATRi reporter virus performed indistinguishably from LucR.T2A reporter virus. In summary, reporter viruses comprising the "6ATRi" element promise to augment HIV-1 vaccine and transmission research approaches requiring a sensitive reporter readout combined with wild-type Nef function.


Subject(s)
Gene Expression Profiling , HIV-1/physiology , Internal Ribosome Entry Sites , Luciferases, Renilla/analysis , Protein Biosynthesis , Virus Replication , nef Gene Products, Human Immunodeficiency Virus/biosynthesis , CD4-Positive T-Lymphocytes/virology , Down-Regulation , Genes, Reporter , HIV-1/genetics , Histocompatibility Antigens Class I/biosynthesis , Humans , Luciferases, Renilla/genetics , nef Gene Products, Human Immunodeficiency Virus/metabolism
16.
Biochem Biophys Res Commun ; 458(3): 543-548, 2015 Mar 13.
Article in English | MEDLINE | ID: mdl-25677617

ABSTRACT

Luciferase assay has become an increasingly important technique to monitor a wide range of biological processes. However, the mainstay protocols require a luminometer to acquire and process the data, therefore limiting its application to specialized research labs. To overcome this limitation, we have developed an alternative protocol that utilizes a commonly available cooled charge-coupled device (CCCD), instead of a luminometer for data acquiring and processing. By measuring activities of different luciferases, we characterized their substrate specificity, assay linearity, signal-to-noise levels, and fold-changes via CCCD. Next, we defined the assay parameters that are critical for appropriate use of CCCD for different luciferases. To demonstrate the usefulness in cultured mammalian cells, we conducted a case study to examine NFκB gene activation in response to inflammatory signals in human embryonic kidney cells (HEK293 cells). We found that data collected by CCCD camera was equivalent to those acquired by luminometer, thus validating the assay protocol. In comparison, The CCCD-based protocol is readily amenable to live-cell and high-throughput applications, offering fast simultaneous data acquisition and visual and quantitative data presentation. In conclusion, the CCCD-based protocol provides a useful alternative for monitoring luciferase reporters. The wide availability of CCCD will enable more researchers to use luciferases to monitor and quantify biological processes.


Subject(s)
Luciferases, Firefly/analysis , Luciferases, Renilla/analysis , Luminescent Agents/analysis , Luminescent Measurements/instrumentation , Animals , Fireflies/enzymology , Genes, Reporter , HEK293 Cells , High-Throughput Screening Assays/instrumentation , Humans , Luciferases, Firefly/genetics , Luciferases, Renilla/genetics , Luminescent Agents/metabolism , Recombinant Proteins/analysis , Recombinant Proteins/genetics , Renilla/enzymology , Transfection
17.
Transfusion ; 55(4): 880-9, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25363675

ABSTRACT

BACKGROUND: Recently, Japanese Red Cross blood centers have changed the confirmatory test method from an indirect immunofluorescence (IF) technique to Western blotting (WB) for antibodies against human T-cell leukemia virus Type 1 (HTLV-1). In this study, these HTLV-1 tests were assessed using another sensitive method, that is, a luciferase immunoprecipitation system (LIPS), to identify a better confirmatory test for HTLV-1 infection. STUDY DESIGN AND METHODS: Plasma samples from 54 qualified donors and 114 HTLV-1 screening-positive donors were tested by LIPS for antibodies against HTLV-1 Gag, Tax, Env, and HBZ recombinant proteins. The donors were categorized into six groups, namely, (Group I) qualified donors, screening positive; (Group II) IF positive; (Group III) IF negative; (Group IV) WB positive; (Group V) WB negative; and (Group VI) screening positive in the previous blood donation, but WB-indeterminate during this study period. RESULTS: In Groups II and IV, all plasma samples tested positive by LIPS for antibodies against Gag and Env proteins. In Group V, all samples tested negative by LIPS, whereas some Group III samples reacted with single or double antigens in LIPS. In Group VI, the LIPS test identified a donor with suspected HTLV-1 infection. The first case of a blood donor with plasma that reacted with HBZ was identified by LIPS. CONCLUSION: Reevaluation of the current HTLV-1 screening method using the LIPS test showed that both confirmatory tests had similar sensitivity and specificity only when WB indeterminate results were eliminated. LIPS is a promising method for detecting and characterizing HTLV-1 antibodies.


Subject(s)
Blood Donors , Blood Safety/methods , Donor Selection/methods , HTLV-I Antibodies/blood , HTLV-I Infections/diagnosis , Human T-lymphotropic virus 1/isolation & purification , Viremia/diagnosis , Basic-Leucine Zipper Transcription Factors/immunology , Blotting, Western , Donor Selection/legislation & jurisprudence , Enzyme-Linked Immunosorbent Assay , False Negative Reactions , False Positive Reactions , Genes, Reporter , Genetic Vectors , HEK293 Cells , HTLV-I Antigens/genetics , HTLV-I Antigens/immunology , HTLV-I Infections/blood , HTLV-I Infections/epidemiology , HTLV-I Infections/prevention & control , HTLV-I Infections/virology , Human T-lymphotropic virus 1/immunology , Humans , Immunoprecipitation , Japan/epidemiology , Luciferases, Renilla/analysis , Luciferases, Renilla/genetics , Luminescent Measurements , Predictive Value of Tests , Retroviridae Proteins/immunology , Sensitivity and Specificity , Viremia/virology
18.
Antiviral Res ; 106: 53-60, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24680955

ABSTRACT

Nipah virus (NiV) outbreaks have occurred in Malaysia, India, and Bangladesh, and the virus continues to cause annual outbreaks of fatal human encephalitis in Bangladesh due to spillover from its bat host reservoir. Due to its high pathogenicity, its potential use for bio/agro-terrorism, and to the current lack of approved therapeutics, NiV is designated as an overlap select agent requiring biosafety level-4 containment. Although the development of therapeutic monoclonal antibodies and soluble protein subunit vaccines have shown great promise, the paucity of effective antiviral drugs against NiV merits further exploration of compound libraries using rapid quantitative antiviral assays. As a proof-of-concept study, we evaluated the use of fluorescent and luminescent reporter NiVs for antiviral screening. We constructed and rescued NiVs expressing either Renilla luciferase or green fluorescent protein, and characterized their reporter signal kinetics in different cell types as well as in the presence of several inhibitors. The 50% effective concentrations (EC50s) derived for inhibitors against both reporter viruses are within range of EC50s derived from virus yield-based dose-response assays against wild-type NiV (within 1Log10), thus demonstrating that both reporter NiVs can serve as robust antiviral screening tools. Utilizing these live NiV-based reporter assays requires modest instrumentation, and circumvents the time and labor-intensive steps associated with cytopathic effect or viral antigen-based assays. These reporter NiVs will not only facilitate antiviral screening, but also the study of host cell components that influence the virus life cycle.


Subject(s)
Antiviral Agents/isolation & purification , Drug Evaluation, Preclinical/methods , Genes, Reporter , Luciferases, Renilla/analysis , Nipah Virus/drug effects , Animals , Antiviral Agents/pharmacology , Cell Line , Humans , Luciferases, Renilla/genetics , Luminescent Measurements , Nipah Virus/genetics
19.
BMC Microbiol ; 14: 44, 2014 Feb 18.
Article in English | MEDLINE | ID: mdl-24548533

ABSTRACT

BACKGROUND: Dengue virus (DENV) still poses a global public health threat, and no vaccine or antiviral therapy is currently available. Antibody plays distinct roles in controlling DENV infections. Neutralizing antibody is protective against DENV infection, whereas sub-neutralizing concentration of antibody can increase DENV infection, termed antibody-dependent enhancement (ADE). Plaque-based assay represents the most widely accepted method measuring neutralizing or enhancing antibodies. RESULTS: In this study, a novel reporter virus-based system was developed for measuring neutralization and ADE activity. A stable Renilla luciferase reporter DENV (Luc-DENV) that can produce robust luciferase signals in BHK-21 and K562 cells were used to establish the assay and validated against traditional plaque-based assay. Luciferase value analysis using various known DENV-specific monoclonal antibodies showed good repeatability and a well linear correlation with conventional plaque-based assays. The newly developed assay was finally validated with clinical samples from infected animals and individuals. CONCLUSIONS: This reporter virus-based assay for neutralizing and enhancing antibody evaluation is rapid, lower cost, and high throughput, and will be helpful for laboratory detection and epidemiological investigation for DENV antibodies.


Subject(s)
Antibodies, Blocking/immunology , Antibodies, Neutralizing/immunology , Antibodies, Viral/immunology , Dengue Virus/immunology , Virology/methods , Animals , Cell Line , Genes, Reporter , Humans , Immunoassay/methods , Luciferases, Renilla/analysis , Reproducibility of Results
20.
Parasit Vectors ; 6: 207, 2013 Jul 15.
Article in English | MEDLINE | ID: mdl-23856321

ABSTRACT

BACKGROUND: New compounds for the treatment of human African trypanosomiasis (HAT) are urgently required. Trypanosoma brucei (T.b.) gambiense is the leading cause of HAT, yet T.b. gambiense is often not the prime target organism in drug discovery. This may be attributed to the difficulties in handling this subspecies and the lack of an efficient viability assay to monitor drug efficacy. METHODS: In this study, a T.b. gambiense strain, recently isolated in the D.R. Congo, was made bioluminescent by transfection with Renilla luciferase (RLuc) without altering its in vitro and in vivo growth characteristics. A luminescent multiplex viability assay (LMVA), based on measurement of the Renilla luciferase activity and the ATP content of the cells within the same experiment, was investigated as an alternative to the standard fluorimetric resazurin viability assay for drug sensitivity testing of T.b. gambiense. RESULTS: In a 96-well format, the RLuc transfected strain showed a detection limit of 2 × 10(4) cells ml(-1) for the Renilla luciferase measurement and 5 × 10(3) cells ml(-1) for the ATP measurement. Both assays of the LMVA showed linearity up to 10(6) cells ml(-1) and correlated well with the cell density during exponential growth of the long slender bloodstream forms. The LMVA was compared to the fluorimetric resazurin viability assay for drug sensitivity testing of pentamidine, eflornithine, nifurtimox and melarsoprol with both the wild type and the RLuc transfected population. For each drug, the IC50 value of the RLuc population was similar to that of the wild type when determined with either the fluorimetric resazurin method or the LMVA. For eflornithine, nifurtimox and melarsoprol we found no difference between the IC50 values in both viability assays. In contrast, the IC50 value of pentamidine was higher when determined with the fluorimetric resazurin method than in both assays of the LMVA. CONCLUSIONS: LMVA has some advantages for viability measurement of T.b. gambiense: it requires less incubation time for viability detection than the fluorimetric resazurin assay and in LMVA, two sensitive and independent viability assays are performed in the same experiment.


Subject(s)
Antiprotozoal Agents/pharmacology , Parasitology/methods , Trypanosoma brucei gambiense/drug effects , Trypanosoma brucei gambiense/physiology , Adenosine Triphosphate/analysis , Cell Survival , Inhibitory Concentration 50 , Luciferases, Renilla/analysis , Luciferases, Renilla/genetics , Luminescent Measurements/methods , Parasitic Sensitivity Tests/methods , Recombinant Proteins/analysis , Recombinant Proteins/genetics , Staining and Labeling/methods , Trypanosoma brucei gambiense/chemistry
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