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1.
Sci Rep ; 14(1): 15704, 2024 Jul 08.
Article in English | MEDLINE | ID: mdl-38977706

ABSTRACT

Halophiles are one of the classes of extremophilic microorganisms that can flourish in environments with very high salt concentrations. In this study, fifteen bacterial strains isolated from various crop rhizospheric soils of agricultural fields along the Southwest coastline of Saurashtra, Gujarat, and identified by 16S rRNA gene sequencing as Halomonas pacifica, H. stenophila, H. salifodinae, H. binhaiensis, Oceanobacillus oncorhynchi, and Bacillus paralicheniformis were investigated for their potentiality to produce extremozymes and compatible solute. The isolates showed the production of halophilic protease, cellulase, and chitinase enzymes ranging from 6.90 to 35.38, 0.004-0.042, and 0.097-0.550 U ml-1, respectively. The production of ectoine-compatible solute ranged from 0.01 to 3.17 mg l-1. Furthermore, the investigation of the ectoine-compatible solute production at the molecular level by PCR showed the presence of the ectoine synthase gene responsible for its biosynthesis in the isolates. Besides, it also showed the presence of glycine betaine biosynthetic gene betaine aldehyde dehydrogenase in the isolates. The compatible solute production by these isolates may be linked to their ability to produce extremozymes under saline conditions, which could protect them from salt-induced denaturation, potentially enhancing their stability and activity. This correlation warrants further investigation.


Subject(s)
RNA, Ribosomal, 16S , Rhizosphere , Soil Microbiology , RNA, Ribosomal, 16S/genetics , Amino Acids, Diamino/biosynthesis , Amino Acids, Diamino/metabolism , India , Crops, Agricultural/microbiology , Cellulase/metabolism , Cellulase/genetics , Cellulase/biosynthesis , Chitinases/metabolism , Chitinases/genetics , Salt Tolerance/genetics , Phylogeny , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Peptide Hydrolases/metabolism , Peptide Hydrolases/genetics , Bacteria/genetics , Bacteria/metabolism , Bacteria/isolation & purification , Bacteria/classification , Bacillus/genetics , Bacillus/metabolism , Bacillus/isolation & purification
2.
BMC Biotechnol ; 24(1): 49, 2024 Jul 15.
Article in English | MEDLINE | ID: mdl-39010004

ABSTRACT

This study used conservative one variable-at-a-time study and statistical surface response methods to increase the yields of an extracellular thermostable protease secreted by a newly identified thermophilic Bacillus subtilis BSP strain. Using conventional optimization techniques, physical parameters in submerged fermentation were adjusted at the shake flask level to reach 184 U/mL. These physicochemical parameters were further optimized by statistical surface response methodology using Box Behnken design, and the protease yield increased to 295 U/mL. The protease was purified and characterized biochemically. Both Ca2+ and Fe2+ increased the activity of the 36 kDa protease enzyme. Based on its strong inhibition by ethylenediaminetetracetate (EDTA), the enzyme was confirmed to be a metalloprotease. The protease was also resistant to various organic solvents (benzene, ethanol, methanol), surfactants (Triton X-100), sodium dodecyl sulfate (SDS), Tween 20, Tween-80 and oxidants hydrogen per oxide (H2O2). Characteristics, such as tolerance to high SDS and H2O2 concentrations, indicate that this protease has potential applications in the pharmaceutical and detergent industries.


Subject(s)
Bacillus subtilis , Enzyme Stability , Bacillus subtilis/enzymology , Bacterial Proteins/metabolism , Bacterial Proteins/chemistry , Hydrogen Peroxide/metabolism , Fermentation , Peptide Hydrolases/metabolism , Peptide Hydrolases/chemistry , Hydrogen-Ion Concentration , Solvents/chemistry , Temperature
3.
Biofouling ; 40(7): 431-445, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38973173

ABSTRACT

Candida albicans is often implicated in nosocomial infections with fatal consequences. Its virulence is contributed to hydrolytic enzymes and biofilm formation. Previous research focused on studying these virulence factors individually. Therefore, this study aimed to investigate the impact of biofilm formation on the hydrolytic activity using an adapted low-cost method. Eleven strains of C. albicans were used. The biofilms were formed on pre-treated silicone discs using 24-well plates and then deposited on the appropriate agar to test each enzyme, while the planktonic cells were conventionally seeded. Biofilms were analysed using Raman spectroscopy, fluorescent and scanning electron microscopy. The adapted method provided an evaluation of hydrolytic enzymes activity in C. albicans biofilm and showed that sessile cells had a higher phospholipase and proteinase activities compared with planktonic cells. These findings were supported by spectroscopic and microscopic analyses, which provided valuable insights into the virulence mechanisms of C. albicans during biofilm formation.


Subject(s)
Biofilms , Candida albicans , Plankton , Candida albicans/physiology , Biofilms/growth & development , Hydrolysis , Microscopy, Electron, Scanning , Phospholipases/metabolism , Spectrum Analysis, Raman/methods , Peptide Hydrolases/metabolism
4.
Appl Microbiol Biotechnol ; 108(1): 413, 2024 Jul 10.
Article in English | MEDLINE | ID: mdl-38985324

ABSTRACT

Environmental concerns arising from the increasing use of polluting plastics highlight polylactic acid (PLA) as a promising eco-friendly alternative. PLA is a biodegradable polyester that can be produced through the fermentation of renewable resources. Together with its excellent properties, suitable for a wide range of applications, the use of PLA has increased significantly over the years and is expected to further grow. However, insufficient degradability under natural conditions emphasizes the need for the exploration of biodegradation mechanisms, intending to develop more efficient techniques for waste disposal and recycling or upcycling. Biodegradation occurs through the secretion of depolymerizing enzymes, mainly proteases, lipases, cutinases, and esterases, by various microorganisms. This review focuses on the enzymatic degradation of PLA and presents different enzymes that were isolated and purified from natural PLA-degrading microorganisms, or recombinantly expressed. The review depicts the main characteristics of the enzymes, including recent advances and analytical methods used to evaluate enantiopurity and depolymerizing activity. While complete degradation of solid PLA particles is still difficult to achieve, future research and improvement of enzyme properties may provide an avenue for the development of advanced procedures for PLA degradation and upcycling, utilizing its building blocks for further applications as envisaged by circular economy principles. KEY POINTS: • Enzymes can be promisingly utilized for PLA upcycling. • Natural and recombinant PLA depolymerases and methods for activity evaluation are summarized. • Approaches to improve enzymatic degradation of PLA are discussed.


Subject(s)
Biodegradation, Environmental , Polyesters , Polyesters/metabolism , Carboxylic Ester Hydrolases/metabolism , Carboxylic Ester Hydrolases/genetics , Lipase/metabolism , Esterases/metabolism , Bacteria/enzymology , Bacteria/metabolism , Peptide Hydrolases/metabolism
5.
Int J Mol Sci ; 25(13)2024 Jun 27.
Article in English | MEDLINE | ID: mdl-39000152

ABSTRACT

Global public health is facing a major issue with emerging resistance to antimicrobial agents. Antimicrobial agents that are currently on the market are strong and efficient, but it has not been ruled out that these medications will eventually cause resistance to bacteria. Exploring novel bioactive compounds derived from natural sources is therefore, crucial to meet future demands. The present study evaluated the mode of action of the antimicrobial potential protease enzyme SH21. Protease SH21 exhibited antimicrobial activity, strong heat stability (up to 100 °C), and pH stability (pH 3.0 to 9.0). In terms of mode of action, we found that protease SH21 was able to disrupt the bacterial cell membrane as the results of the nucleotide leakage and cell membrane permeability assay. In addition, we also checked inner membrane permeability by PI uptake assay which suggested that protease SH21 has the ability to enter the bacterial cell membrane. Our results revealed that the antimicrobial protease SH21 might be a promising candidate for treating microbial infections.


Subject(s)
Bacillus , Microbial Sensitivity Tests , Cell Membrane/drug effects , Cell Membrane/metabolism , Cell Membrane Permeability/drug effects , Peptide Hydrolases/metabolism , Hydrogen-Ion Concentration , Anti-Infective Agents/pharmacology , Anti-Infective Agents/chemistry , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/chemistry , Bacterial Proteins/metabolism , Enzyme Stability
6.
Int J Mol Sci ; 25(13)2024 Jun 28.
Article in English | MEDLINE | ID: mdl-39000228

ABSTRACT

Aspergillus fungi constitute a pivotal element within ecosystems, serving as both contributors of biologically active compounds and harboring the potential to cause various diseases across living organisms. The organism's proteolytic enzyme complex, termed the degradome, acts as an intermediary in its dynamic interaction with the surrounding environment. Using techniques such as genome and transcriptome sequencing, alongside protein prediction methodologies, we identified putative extracellular peptidases within Aspergillus ochraceus VKM-F4104D. Following manual annotation procedures, a total of 11 aspartic, 2 cysteine, 2 glutamic, 21 serine, 1 threonine, and 21 metallopeptidases were attributed to the extracellular degradome of A. ochraceus VKM-F4104D. Among them are enzymes with promising applications in biotechnology, potential targets and agents for antifungal therapy, and microbial antagonism factors. Thus, additional functionalities of the extracellular degradome, extending beyond mere protein substrate digestion for nutritional purposes, were demonstrated.


Subject(s)
Aspergillus ochraceus , Fungal Proteins , Peptide Hydrolases , Aspergillus ochraceus/metabolism , Aspergillus ochraceus/genetics , Peptide Hydrolases/metabolism , Fungal Proteins/metabolism , Fungal Proteins/genetics , Protease Inhibitors/pharmacology , Protease Inhibitors/metabolism , Proteolysis , Phylogeny , Genome, Fungal , Transcriptome
7.
Mem Inst Oswaldo Cruz ; 119: e240038, 2024.
Article in English | MEDLINE | ID: mdl-38985089

ABSTRACT

BACKGROUND: Leishmania (Viannia) braziliensis Thor strain exhibits a heterogeneous composition comprised of subpopulations with varying levels of infectivity. Clonal subpopulations were previously obtained from the strain Thor by sorting single-parasites and proceeding cultivation. The subpopulations used in this study are named Thor03, Thor 10 and Thor22. OBJECTIVES: Phenotypic characteristics of the parasite, specially focusing on virulence factors and resistance to the antimicrobial mechanisms of macrophages, were investigate in these subpopulations. METHODS: Cellular and molecular biology, as well as biochemistry approaches were applied to obtain the data analysed in this study. FINDINGS: Relative quantification of gene expression was measured for calpain, cysteine protease B (CPB), and subtilisin proteases but no significant differences in these genes' expression among subpopulations was observed. However, subtilisin and CPB proteins were assessed as more abundant in Thor03 by fluorescence-labelled flow cytometry technique. Western Blotting assays, as semi-quantitative analysis in gel, showed higher concentrations of subtilisin (110 to 50 kDa) and CPB (40 to 18 kDa) in extract of intracellular amastigotes from subpopulations Thor03 and Thor10 and calpain (60 to 25 kDa) showed no significant differences among subpopulations. Complementary, higher trypanothione reductase activity was observed in Thor10 intracellular amastigotes and assays of susceptibility to hydrogen peroxide-inducing agents and nitric oxide donors conducted with promastigotes revealed greater resistance to in vitro oxidative stress induction for Thor10, followed by Thor03. MAIN CONCLUSIONS: The data obtained for the virulence factors explored here suggest how multiple coexisting phenotypic-distinct subpopulations may contribute in adaptability of a single L. (V.) braziliensis strain during infection in the host cells.


Subject(s)
Leishmania braziliensis , Leishmania braziliensis/enzymology , Leishmania braziliensis/genetics , Leishmania braziliensis/drug effects , Animals , Macrophages/parasitology , Blotting, Western , Flow Cytometry , Virulence Factors , Peptide Hydrolases/metabolism , Phenotype , NADH, NADPH Oxidoreductases
8.
Food Res Int ; 188: 114463, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38823831

ABSTRACT

To investigate the prevalence of Pseudomonas in the pasteurized milk production process and its effect on milk quality, 106 strains of Pseudomonas were isolated from the pasteurized milk production process of a milk production plant in Shaanxi Province, China. The protease, lipase and biofilm-producing capacities of the 106 Pseudomonas strains were evaluated, and the spoilage enzyme activities of their metabolites were assessed by simulating temperature incubation in the refrigerated (7 °C) and transport environment (25 °C) segments and thermal treatments of pasteurization (75 °C, 5 min) and ultra-high temperature sterilization (121 °C, 15 s). A phylogenetic tree was drawn based on 16S rDNA gene sequencing and the top 5 strains were selected as representative strains to identify their in situ spoilage potential by examining their growth potential and ability to hydrolyze proteins and lipids in milk using growth curves, pH, whiteness, Zeta-potential, lipid oxidation, SDS-PAGE and volatile flavor compounds. The results showed that half and more of the isolated Pseudomonas had spoilage enzyme production and biofilm capacity, and the spoilage enzyme activity of metabolites was affected by the culture temperature and sterilization method, but ultra-high temperature sterilization could not completely eliminate the enzyme activity. The growth of Pseudomonas lundensis and Pseudomonas qingdaonensis was less affected by temperature and time, and the hydrolytic capacity of extracellular protease and lipase secreted by Pseudomonas lurida was the strongest, which had the greatest effect on milk quality. Therefore, it is crucial to identify the key contamination links of Pseudomonas, the main bacteria responsible for milk spoilage, and the influence of environmental factors on its deterioration.


Subject(s)
Biofilms , Food Microbiology , Lipase , Milk , Pasteurization , Pseudomonas , Pseudomonas/metabolism , Pseudomonas/genetics , Pseudomonas/isolation & purification , Pseudomonas/growth & development , Milk/microbiology , Animals , Biofilms/growth & development , Lipase/metabolism , China , Phylogeny , Peptide Hydrolases/metabolism , RNA, Ribosomal, 16S/genetics , Food Contamination/analysis , Temperature
9.
Food Res Int ; 188: 114513, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38823886

ABSTRACT

This study reports the effect of thermal pretreatment and the use of different commercial proteolytic enzymes (Protamex, Flavourzyme, Protana prime, and Alcalase) on the free amino acid content (FAA), peptide profile, and antioxidant, antidiabetic, antihypertensive, and anti-inflammatory potential (DPPH, FRAP, and ABTS assay, DPP-IV, ACE-I, and NEP inhibitory activities) of dry-cured ham bone hydrolyzates. The effect of in vitro digestion was also determined. Thermal pretreatment significantly increased the degree of hydrolysis, the FAA, and the DPP-IV and ACE-I inhibitory activities. The type of peptidase used was the most significant factor influencing antioxidant activity and neprilysin inhibitory activity. Protana prime hydrolyzates failed to inhibit DPP-IV and neprilysin enzymes and had low values of ACE-I inhibitory activity. After in vitro digestion, bioactivities kept constant in most cases or even increased in ACE-I inhibitory activity. Therefore, hydrolyzates from dry-cured ham bones could serve as a potential source of functional food ingredients for health benefits.


Subject(s)
Antioxidants , Digestion , Animals , Hydrolysis , Antioxidants/metabolism , Antioxidants/analysis , Bone and Bones/metabolism , Swine , Angiotensin-Converting Enzyme Inhibitors/pharmacology , Angiotensin-Converting Enzyme Inhibitors/metabolism , Food Handling/methods , Hot Temperature , Amino Acids/metabolism , Amino Acids/analysis , Meat Products/analysis , Hypoglycemic Agents/pharmacology , Antihypertensive Agents/pharmacology , Anti-Inflammatory Agents/pharmacology , Peptide Hydrolases/metabolism , Dipeptidyl-Peptidase IV Inhibitors , Neprilysin/metabolism , Neprilysin/antagonists & inhibitors , Endopeptidases
10.
Viruses ; 16(6)2024 Jun 19.
Article in English | MEDLINE | ID: mdl-38932275

ABSTRACT

Viral tropism is most commonly linked to receptor use, but host cell protease use can be a notable factor in susceptibility to infection. Here we review the use of host cell proteases by human viruses, focusing on those with primarily respiratory tropism, particularly SARS-CoV-2. We first describe the various classes of proteases present in the respiratory tract, as well as elsewhere in the body, and incorporate the targeting of these proteases as therapeutic drugs for use in humans. Host cell proteases are also linked to the systemic spread of viruses and play important roles outside of the respiratory tract; therefore, we address how proteases affect viruses across the spectrum of infections that can occur in humans, intending to understand the extrapulmonary spread of SARS-CoV-2.


Subject(s)
Peptide Hydrolases , Respiratory Tract Infections , SARS-CoV-2 , Humans , Respiratory Tract Infections/virology , Respiratory Tract Infections/drug therapy , SARS-CoV-2/drug effects , SARS-CoV-2/physiology , SARS-CoV-2/enzymology , Peptide Hydrolases/metabolism , Viral Tropism , COVID-19/virology , Virus Diseases/drug therapy , Virus Diseases/virology , Antiviral Agents/pharmacology , Host-Pathogen Interactions , Protease Inhibitors/pharmacology
11.
Int J Mol Sci ; 25(11)2024 May 24.
Article in English | MEDLINE | ID: mdl-38891925

ABSTRACT

Stress exposure worsens allergic inflammatory diseases substantially. Mast cells (MCs) play a key role in peripheral immune responses to neuroendocrine stress mediators such as nerve growth factor (NGF) and substance P (SP). Mast cell proteases (MCPs) and cholinergic factors (Chrna7, SLURP1) were recently described to modulate MC stress response. We studied MCPs and Chrna7/SLURP1 and their interplay in a mouse model for noise induced stress (NiS) and atopic dermatitis-like allergic inflammation (AlD) and in cultured MC lacking Chrna7. We found that the cholinergic stress axis interacts with neuroendocrine stress mediators and stress-mediator cleaving enzymes in AlD. SP-cleaving mMCP4+ MC were upregulated in AlD and further upregulated by stress in NiS+AlD. Anti-NGF neutralizing antibody treatment blocked the stress-induced upregulation in vivo, and mMCP4+ MCs correlated with measures of AlD disease activity. Finally, high mMCP4 production in response to SP depended on Chrna7/SLURP1 in cultured MCs. In conclusion, mMCP4 and its upstream regulation by Chrna7/SLURP1 are interesting novel targets for the treatment of allergic inflammation and its aggravation by stress.


Subject(s)
Dermatitis, Atopic , Disease Models, Animal , Mast Cells , Skin , alpha7 Nicotinic Acetylcholine Receptor , Animals , Mast Cells/metabolism , Mast Cells/immunology , Dermatitis, Atopic/metabolism , Dermatitis, Atopic/pathology , Dermatitis, Atopic/immunology , Mice , Skin/metabolism , Skin/pathology , alpha7 Nicotinic Acetylcholine Receptor/metabolism , Inflammation/metabolism , Inflammation/pathology , Peptide Hydrolases/metabolism , Urokinase-Type Plasminogen Activator/metabolism , Substance P/metabolism , Stress, Physiological , Mice, Inbred C57BL , Nerve Growth Factor/metabolism
12.
Mol Biol Rep ; 51(1): 713, 2024 Jun 01.
Article in English | MEDLINE | ID: mdl-38824247

ABSTRACT

BACKGROUND: Protease S (PrtS) from Photorhabdus laumondii belongs to the group of protealysin-like proteases (PLPs), which are understudied factors thought to play a role in the interaction of bacteria with other organisms. Since P. laumondii is an insect pathogen and a nematode symbiont, the analysis of the biological functions of PLPs using the PrtS model provides novel data on diverse types of interactions between bacteria and hosts. METHODS AND RESULTS: Recombinant PrtS was produced in Escherichia coli. Efficient inhibition of PrtS activity by photorin, a recently discovered emfourin-like protein inhibitor from P. laumondii, was demonstrated. The Galleria mellonella was utilized to examine the insect toxicity of PrtS and the impact of PrtS on hemolymph proteins in vitro. The insect toxicity of PrtS is reduced compared to protease homologues from non-pathogenic bacteria and is likely not essential for the infection process. However, using proteomic analysis, potential PrtS targets have been identified in the hemolymph. CONCLUSIONS: The spectrum of identified proteins indicates that the function of PrtS is to modulate the insect immune response. Further studies of PLPs' biological role in the PrtS and P. laumondii model must clarify the details of PrtS interaction with the insect immune system during bacterial infection.


Subject(s)
Moths , Peptide Hydrolases , Photorhabdus , Animals , Moths/microbiology , Peptide Hydrolases/metabolism , Bacterial Proteins/metabolism , Bacterial Proteins/genetics , Hemolymph/metabolism , Proteomics/methods , Recombinant Proteins/metabolism , Recombinant Proteins/genetics , Escherichia coli/genetics , Escherichia coli/metabolism
13.
Mol Biol (Mosk) ; 58(1): 171-177, 2024.
Article in Russian | MEDLINE | ID: mdl-38943589

ABSTRACT

Many viruses, including SARS-CoV-2, the coronavirus responsible for the COVID-19 pandemic, enter host cells through a process of cell-viral membrane fusion that is activated by proteolytic enzymes. Typically, these enzymes are host cell proteases. Identifying the proteases that activate the virus is not a simple task but is important for the development of new antiviral drugs. In this study, we developed a bioinformatics method for identifying proteases that can cleave viral envelope glycoproteins. The proposed approach involves the use of predictive models for the substrate specificity of human proteases and the application of a structural analysis method for predicting the vulnerability of protein regions to proteolysis based on their 3D structures. Specificity models were constructed for 169 human proteases using information on their known substrates. A previously developed method for structural analysis of potential proteolysis sites was applied in parallel with specificity models. Validation of the proposed approach was performed on the SARS-CoV-2 spike protein, whose proteolysis sites have been well studied.


Subject(s)
Computational Biology , Peptide Hydrolases , Proteolysis , SARS-CoV-2 , Spike Glycoprotein, Coronavirus , Spike Glycoprotein, Coronavirus/metabolism , Spike Glycoprotein, Coronavirus/genetics , Spike Glycoprotein, Coronavirus/chemistry , Humans , SARS-CoV-2/enzymology , SARS-CoV-2/genetics , SARS-CoV-2/metabolism , Computational Biology/methods , Substrate Specificity , Peptide Hydrolases/metabolism , Peptide Hydrolases/chemistry , Peptide Hydrolases/genetics , COVID-19/virology , COVID-19/metabolism , Pandemics , Models, Molecular , Betacoronavirus/enzymology , Betacoronavirus/genetics
14.
Int J Biol Macromol ; 273(Pt 2): 133199, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38885866

ABSTRACT

This study aimed to produce, characterize and purify a protease from Aspergillus heteromorphus URM0269. After production by solid fermentation of wheat bran performed according to a central composite design, protease was characterized in terms of biochemical, kinetic, and thermodynamic parameters for further purification by chromatography. Proteolytic activity achieved a maximum value of 57.43 U/mL using 7.8 g of wheat bran with 40 % moisture. Protease displayed high stability in the pH and temperature ranges of 5.0-10.0 and 20-30 °C, respectively, and acted optimally at pH 7.0 and 50 °C. The enzyme, characterized as a serine protease, followed Michaelis-Menten kinetics with a maximum reaction rate of 140.0 U/mL and Michaelis constant of 11.6 mg/mL. Thermodynamic activation parameters, namely activation Gibbs free energy (69.79 kJ/mol), enthalpy (5.86 kJ/mol), and entropy (-214.39 J/mol.K) of the hydrolysis reaction, corroborated with kinetic modeling showing high affinity for azocasein. However, thermodynamic parameters suggested a reversible mechanism of unfolding. Purification by chromatography yielded a protease purification factor of 7.2, and SDS-PAGE revealed one protein band with a molecular mass of 14.7 kDa. Circular dichroism demonstrated a secondary structure made up of 45.6 % α-helices. These results show the great potential of this protease for future use in the industrial area.


Subject(s)
Aspergillus , Temperature , Thermodynamics , Aspergillus/enzymology , Kinetics , Hydrogen-Ion Concentration , Enzyme Stability , Fermentation , Peptide Hydrolases/chemistry , Peptide Hydrolases/isolation & purification , Peptide Hydrolases/metabolism , Hydrolysis , Agriculture
15.
J Oleo Sci ; 73(7): 963-976, 2024.
Article in English | MEDLINE | ID: mdl-38945925

ABSTRACT

The objective of this research was to evaluate the efficiency of aqueous enzymatic extraction (AEE) to obtain oil from hemp seeds (Cannabis sativa L.) grown in northern Morocco. Optimisation of AEE extraction parameters, including pH, enzyme concentration (hemicellulase, protease and pectinase), temperature and incubation time, to maximize oil yield was achieved using response surface methodology with a central composite design. For comparison, the solvent extraction (Soxhlet) (SE) method was also used. Optimized hydrolysis conditions involved incubation for 4 hours at 60°C with a pH of 6.5, using a multi-enzyme preparation comprising protease, hemicellulase and pectinase at concentrations of 55, 202.5 and 234 U/mg, respectively. Referring to the conventional Soxhlet extraction (SE), Aqueous Enzymatic Extraction (AEE) achieved a 30.65% oil recovery rate under the optimized parameters mentioned above. The use of enzymes produced an oil that was more stable against oxidation than the solvent-extracted oil, with a peroxide value (PV) of 19.54 and 47.87 meq O 2 /kg, respectively. Furthermore, HPLC-DAD analysis of tocopherol content indicated a higher total tocopherol content (547.2 mg/kg) in Aqueous Enzymatic Extraction (AEE) compared to Soxhlet Extraction (SE) (513.51 mg/kg), with γ-tocopherol being the predominant form. No significant differences in fatty acid composition were observed between the two extraction methods with linoleic acid and alpha-linolenic acid being the predominant constituents.


Subject(s)
Cannabis , Glycoside Hydrolases , Peptide Hydrolases , Plant Oils , Polygalacturonase , Seeds , Cannabis/chemistry , Polygalacturonase/metabolism , Plant Oils/chemistry , Plant Oils/isolation & purification , Glycoside Hydrolases/metabolism , Seeds/chemistry , Peptide Hydrolases/metabolism , Hydrolysis , Liquid-Liquid Extraction/methods , Food Quality , Water , Tocopherols/analysis , Tocopherols/isolation & purification , Hydrogen-Ion Concentration , Temperature , Solvents/chemistry , Green Chemistry Technology/methods
16.
New Phytol ; 243(3): 1034-1049, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38853453

ABSTRACT

Processing by proteases irreversibly regulates the fate of plant proteins and hampers the production of recombinant proteins in plants, yet only few processing events have been described in agroinfiltrated Nicotiana benthamiana, which has emerged as the main transient protein expression platform in plant science and molecular pharming. Here, we used in-gel digests and mass spectrometry to monitor the migration and topography of 5040 plant proteins within a protein gel. By plotting the peptides over the gel slices, we generated peptographs that reveal where which part of each protein was detected within the protein gel. These data uncovered that 60% of the detected proteins have proteoforms that migrate at lower than predicted molecular weights, implicating extensive proteolytic processing. This analysis confirms the proteolytic removal and degradation of autoinhibitory prodomains of most but not all proteases, and revealed differential processing within pectinemethylesterase and lipase families. This analysis also uncovered intricate processing of glycosidases and uncovered that ectodomain shedding might be common for a diverse range of receptor-like kinases. Transient expression of double-tagged candidate proteins confirmed processing events in vivo. This large proteomic dataset implicates an elaborate proteolytic machinery shaping the proteome of N. benthamiana.


Subject(s)
Nicotiana , Plant Proteins , Proteolysis , Proteome , Nicotiana/genetics , Nicotiana/metabolism , Proteome/metabolism , Plant Proteins/metabolism , Plant Proteins/genetics , Proteomics , Carboxylic Ester Hydrolases/metabolism , Carboxylic Ester Hydrolases/genetics , Lipase/metabolism , Lipase/genetics , Peptide Hydrolases/metabolism , Glycoside Hydrolases/metabolism , Glycoside Hydrolases/genetics
17.
Curr Microbiol ; 81(7): 217, 2024 Jun 09.
Article in English | MEDLINE | ID: mdl-38852107

ABSTRACT

The application of enzymes in agricultural fields has been little explored. One potential application of fungal lytic enzymes (chitinases, lipases, and proteases) is as an additive to current biopesticides to increase their efficacy and reduce the time of mortality. For this, a screening of lytic overproducer fungi under submerged fermentation with a chemical-defined medium was performed. Then, the enzymatic crude extract (ECE) was concentrated and partially characterized. This characterization consisted of measuring the enzymatic activity (lipase, protease and, chitinase) and determining the enzyme stability after storage at temperatures of - 80, - 20 and, 4 °C. And lastly, the application of these concentrated enzymatic crude extracts (C-ECE) as an enhancer of spores-based fungal biopesticide was proven. Beauveria were not as good producers of lytic enzymes as the strains from Trichoderma and Metarhizium. The isolate M. robertsii Mt015 was selected for the co-production of chitinases and proteases; and the isolate T. harzianum Th180 for co-production of chitinases, lipases, and proteases. The C-ECE of Mt015 had a protease activity of 18.6 ± 1.1 U ml-1, chitinase activity of 0.28 ± 0.01 U ml-1, and no lipase activity. Meanwhile, the C-ECE of Th180 reached a chitinase activity of 0.75 U ml-1, lipase activity of 0.32 U ml-1, and protease activity of 0.24 U ml-1. Finally, an enhancing effect of the enzymatic extracts of M. robertsii (66.7%) and T. harzianum (43.5%) on the efficacy of B. bassiana Bv064 against Diatraea saccharalis larvae was observed. This work demonstrates the non-species-specific enhancing effect of enzymatic extracts on the insecticidal activity of conidial-based biopesticides, which constitutes a contribution to the improvement of biological control agents' performance.


Subject(s)
Chitinases , Fermentation , Peptide Hydrolases , Chitinases/metabolism , Peptide Hydrolases/metabolism , Animals , Lipase/metabolism , Fungal Proteins/metabolism , Fungal Proteins/genetics , Biological Control Agents/pharmacology , Biological Control Agents/metabolism , Fungi/metabolism , Pest Control, Biological/methods , Beauveria/enzymology , Beauveria/metabolism , Enzyme Stability
18.
ACS Nano ; 18(26): 17018-17030, 2024 Jul 02.
Article in English | MEDLINE | ID: mdl-38845136

ABSTRACT

The advantageous optical properties of quantum dots (QDs) motivate their use in a wide variety of applications related to imaging and bioanalysis, including the detection of proteases and their activity. Recent studies have shown that surface chemistry on QDs is able to modulate protease activity, but only nonspecifically. Here, we present a strategy to selectively accelerate the activity of a particular target protease by as much as two orders of magnitude. Exosite-binding "bait" peptides were derived from proteins that span a range of biological roles─substrate, receptor, and inhibitor─and were used to increase the affinity of the QD-peptide conjugates for either thrombin or factor Xa, resulting in increased rates of proteolysis for coconjugated substrates. Unlike effects from QD surface chemistry, the acceleration was specific to the target protease with negligible acceleration of other proteases. Benefits of this "bait and cleave" sensing approach included detection limits that improved by more than an order of magnitude, reenabled detection of target protease against an overwhelming background of nontarget proteolysis, and mitigation of the action of inhibitors. The cumulative results point to a generalizable strategy, where the mechanism of acceleration, considerations for the design of bait peptides and conjugates, and routes to expanding the scope of this approach are discussed. Overall, this research represents a major step forward in the rational design of nanoparticle-based enzyme sensors that enhance sensitivity and selectivity.


Subject(s)
Peptides , Quantum Dots , Thrombin , Quantum Dots/chemistry , Peptides/chemistry , Peptides/metabolism , Thrombin/metabolism , Thrombin/analysis , Thrombin/chemistry , Factor Xa/metabolism , Factor Xa/chemistry , Proteolysis , Humans , Surface Properties , Peptide Hydrolases/metabolism , Peptide Hydrolases/chemistry
19.
J Med Chem ; 67(13): 10891-10905, 2024 Jul 11.
Article in English | MEDLINE | ID: mdl-38934239

ABSTRACT

Antifungal peptides are an appealing alternative to standard antifungal medicines due to their unique mechanism of action and low-level resistance. However, their susceptibility to protease degradation keeps hindering their future development. Herein, a library was established to design peptides with protease resistance and high antifungal activity. The peptides were incorporated with minimal D-amino acids to further improve the protease stability. The most active peptide, IR3, demonstrated good antifungal activity and low toxicity, and its molecular integrity was maintained after protease hydrolysis for 8 h at 2 mg/mL. Furthermore, IR3 could permeate the fungal cell wall, disrupt the cell membrane, produce reactive oxygen species, and induce apoptosis in fungal cells. In vivo experiments confirmed that IR3 could effectively treat fungal keratitis. Collectively, these findings suggest that IR3 is a promising antifungal agent and may be beneficial in the design and development of protease-resistant antifungal peptides.


Subject(s)
Amino Acids , Antifungal Agents , Microbial Sensitivity Tests , Antifungal Agents/pharmacology , Antifungal Agents/chemical synthesis , Antifungal Agents/chemistry , Amino Acids/chemistry , Amino Acids/pharmacology , Amino Acids/metabolism , Drug Design , Animals , Proteolysis/drug effects , Peptides/pharmacology , Peptides/chemistry , Peptides/metabolism , Candida albicans/drug effects , Keratitis/drug therapy , Keratitis/microbiology , Peptide Hydrolases/metabolism , Reactive Oxygen Species/metabolism , Mice , Apoptosis/drug effects , Drug Resistance, Fungal/drug effects , Structure-Activity Relationship
20.
Antiviral Res ; 228: 105919, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38851592

ABSTRACT

Bacillus spp. has been considered a promising source for identifying new antimicrobial substances, including anti-viral candidates. Here, we successfully isolated a number of bacteria strains from aged dry citrus peel (Chenpi). Of note, the culture supernatant of a new isolate named Bacillus subtilis LjM2 demonstrated strong inhibition of influenza A virus (IAV) infection in multiple experimental systems in vitro and in vivo. In addition, the anti-viral effect of LjM2 was attributed to its direct lysis of viral particles. Further analysis showed that a protease which we named CPAVM1 isolated from the culture supernatant of LjM2 was the key component responsible for its anti-viral function. Importantly, the therapeutic effect of CPAVM1 was still significant when applied 12 hours after IAV infection of experimental mice. Moreover, we found that the CPAVM1 protease cleaved multiple IAV proteins via targeting basic amino acid Arg or Lys. Furthermore, this study reveals the molecular structure and catalytic mechanism of CPAVM1 protease. During catalysis, Tyr75, Tyr77, and Tyr102 are important active sites. Therefore, the present work identified a special protease CPAVM1 secreted by a new strain of Bacillus subtilis LjM2 against influenza A virus infection via direct cleavage of critical viral proteins, thus facilitates future biotechnological applications of Bacillus subtilis LjM2 and the protease CPAVM1.


Subject(s)
Antiviral Agents , Bacillus subtilis , Orthomyxoviridae Infections , Animals , Mice , Antiviral Agents/pharmacology , Orthomyxoviridae Infections/virology , Influenza A virus/drug effects , Influenza A virus/enzymology , Peptide Hydrolases/metabolism , Dogs , Mice, Inbred BALB C , Humans , Viral Proteins/metabolism , Viral Proteins/genetics , Madin Darby Canine Kidney Cells , Female , Bacterial Proteins/metabolism
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