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1.
Sensors (Basel) ; 24(15)2024 Jul 23.
Article in English | MEDLINE | ID: mdl-39123823

ABSTRACT

To non-destructively and rapidly monitor the chlorophyll content of winter wheat leaves under CO2 microleakage stress, and to establish the quantitative relationship between chlorophyll content and sensitive bands in the winter wheat growing season from 2023 to 2024, the leakage rate was set to 1 L/min, 3 L/min, 5 L/min, and 0 L/min through field experiments. The dimensional reduction was realized, fractional differential processing of a wheat canopy spectrum was carried out, a multiple linear regression (MLR) and partial least squares regression (PLSR) estimation model was constructed using a SPA selection band, and the model's accuracy was evaluated. The optimal model for hyperspectral estimation of wheat SPAD under CO2 microleakage stress was screened. The results show that the spectral curves of winter wheat leaves under CO2 microleakage stress showed a "red shift" of the green peak and a "blue shift" of the red edge. Compared with 1 L/min and 3 L/min, wheat leaves were more affected by CO2 at 5 L/min. Evaluation of the accuracy of the MLR and PLSR models shows that the MLR model is better, where the MLR estimation model based on 1.1, 1.8, 0.4, and 1.7 differential SPAD is the best for leakage rates of 1 L/min, 3 L/min, 5 L/min, and 0 L/min, with validation set R2 of 0.832, 0.760, 0.928, and 0.773, which are 11.528, 14.2, 17.048, and 37.3% higher than the raw spectra, respectively. This method can be used to estimate the chlorophyll content of winter wheat leaves under CO2 trace-leakage stress and to dynamically monitor CO2 trace-leakage stress in crops.


Subject(s)
Carbon Dioxide , Chlorophyll , Plant Leaves , Triticum , Triticum/metabolism , Triticum/chemistry , Plant Leaves/chemistry , Plant Leaves/metabolism , Carbon Dioxide/metabolism , Chlorophyll/metabolism , Chlorophyll/chemistry , Least-Squares Analysis , Linear Models , Spectrum Analysis/methods , Seasons , Stress, Physiological/physiology
2.
PLoS One ; 19(8): e0307853, 2024.
Article in English | MEDLINE | ID: mdl-39173042

ABSTRACT

Precise prediction of soil salinity using visible, and near-infrared (vis-NIR) spectroscopy is crucial for ensuring food security and effective environmental management. This paper focuses on the precise prediction of soil salinity utilizing visible and near-infrared (vis-NIR) spectroscopy, a critical factor for food security and effective environmental management. The objective is to utilize vis-NIR spectra alongside a multiple regression model (MLR) and a random forest (RF) modeling approach to predict soil salinity across various land use types, such as farmlands, bare lands, and rangelands accurately. To this end, we selected 150 sampling points representatives of these diverse land uses. At each point, we collected soil samples to measure the soil salinity (ECe) and employed a portable spectrometer to capture the spectral reflectance across the full wavelength range of 400 to 2400 nm. The methodology involved using both individual spectral reflectance values and combinations of reflectance values from different wavelengths as input variables for developing the MLR and RF models. The results indicated that the RF model (RMSE = 4.85 dS m-1, R2 = 0.87, and RPD = 3.15), utilizing combined factors as input variables, outperformed others. Furthermore, our analysis across different land uses revealed that models incorporating combined input variables yielded significantly better results, particularly for farmlands and rangelands. This study underscores the potential of combining vis-NIR spectroscopy with advanced modeling techniques to enhance the accuracy of soil salinity predictions, thereby supporting more informed agricultural and environmental management decisions.


Subject(s)
Salinity , Soil , Spectroscopy, Near-Infrared , Soil/chemistry , Spectroscopy, Near-Infrared/methods , Regression Analysis , Agriculture/methods , Environmental Monitoring/methods , Spectrum Analysis/methods , Random Forest
3.
Clin Oral Investig ; 28(9): 474, 2024 Aug 08.
Article in English | MEDLINE | ID: mdl-39112646

ABSTRACT

OBJECTIVES: Inadequate resection margins of less than 5 mm impair local tumor control. This weak point in oncological safety is exacerbated in bone-infiltrating tumors because rapid bone analysis procedures do not exist. This study aims to assess the bony resection margin status of bone-invasive oral cancer using laser-induced breakdown spectroscopy (LIBS). MATERIALS AND METHODS: LIBS experiments were performed on natively lasered, tumor-infiltrated mandibular cross-sections from 10 patients. In total, 5,336 spectra were recorded at defined distances from the tumor border. Resection margins < 1 mm were defined as very close, from 1-5 mm as close, and > 5 mm as clear. The spectra were histologically validated. Based on the LIBS spectra, the discriminatory power of potassium (K) and soluble calcium (Ca) between bone-infiltrating tumor tissue and very close, close, and clear resection margins was determined. RESULTS: LIBS-derived electrolyte emission values of K and soluble Ca as well as histological parameters for bone neogenesis/fibrosis and lymphocyte/macrophage infiltrates differ significantly between bone-infiltrating tumor tissue spectra and healthy bone spectra from very close, close, and clear resection margins (p < 0.0001). Using LIBS, the transition from very close resection margins to bone-infiltrating tumor tissue can be determined with a sensitivity of 95.0%, and the transition from clear to close resection margins can be determined with a sensitivity of 85.3%. CONCLUSIONS: LIBS can reliably determine the boundary of bone-infiltrating tumors and might provide an orientation for determining a clear resection margin. CLINICAL RELEVANCE: LIBS could facilitate intraoperative decision-making and avoid inadequate resection margins in bone-invasive oral cancer.


Subject(s)
Margins of Excision , Mouth Neoplasms , Spectrum Analysis , Humans , Mouth Neoplasms/surgery , Mouth Neoplasms/pathology , Spectrum Analysis/methods , Male , Female , Middle Aged , Aged , Neoplasm Invasiveness , Calcium/analysis , Potassium/analysis , Mandible/surgery , Mandible/pathology , Lasers
4.
J Am Board Fam Med ; 37(3): 427-435, 2024.
Article in English | MEDLINE | ID: mdl-39142857

ABSTRACT

BACKGROUND: Access to dermatologists is limited in parts of the US, making primary care clinicians (PCCs) integral for early detection of skin cancers. A handheld device using elastic scattering spectroscopy (ESS) was developed to aid PCCs in their clinical assessment of skin lesions. METHODS: In this prospective study, 3 PCCs evaluated skin lesions reported by patients as concerning and scanned each lesion with the handheld ESS device. The comparison was pathology results or a 3-dermatologist panel examining high resolution dermatoscopic and clinical images. PCCs reported their diagnosis, management decision, and confidence level for each lesion. Evaluation of results included sensitivity, specificity, negative predictive value (NPV), positive predictive value (PPV), and Area Under the Curve (AUC). RESULTS: A total of 155 patients and 178 lesions were included in the final analysis. The most commonly patient-reported concerning feature was "new or changing lesion" (91.6%). Device diagnostic sensitivity and specificity were 90.0% and 60.7%, respectively, based on biopsy result or dermatologist panel reference standard; comparatively, PCC sensitivity was 40.0% and 84.8% specificity without the use of the device. Device NPV was 98.9%, and device PPV was 13.6%. The device recommended patient referral to dermatology with 88.2% concordance with the dermatologist panel. AUC for the device and PCCs were 0.815 and 0.643, respectively. CONCLUSIONS: The use of the ESS device by PCCs can improve diagnostic and management sensitivity for select malignant skin lesions by correctly classifying most benign lesions of patient concern. This may increase skin cancer detection while improving access to specialist care.


Subject(s)
Sensitivity and Specificity , Skin Neoplasms , Humans , Prospective Studies , Skin Neoplasms/diagnosis , Skin Neoplasms/pathology , Female , Male , Middle Aged , Aged , Spectrum Analysis/methods , Adult , Early Detection of Cancer/methods , Primary Health Care , Aged, 80 and over , Dermoscopy/instrumentation , Predictive Value of Tests
5.
J Vis Exp ; (209)2024 Jul 26.
Article in English | MEDLINE | ID: mdl-39141544

ABSTRACT

Measuring greenhouse gas (GHG) fluxes and pools in ecosystems are becoming increasingly common in ecological studies due to their relevance to climate change. With it, the need for analytical platforms adaptable to measuring different pools and fluxes within research groups also grows. This study aims to develop a procedure to use portable optical spectroscopy-based gas analyzers, originally designed and marketed for gas flux measurements, to measure GHG concentrations in aqueous samples. The protocol involves the traditional headspace equilibration technique followed by the injection of a headspace gas subsample into a chamber connected through a closed loop to the inlet and outlet ports of the gas analyzer. The chamber is fabricated from a generic mason jar and simple laboratory supplies, and it is an ideal solution for samples that may require pre-injection dilution. Methane concentrations measured with the chamber are tightly correlated (r2 > 0.98) with concentrations determined separately through gas chromatography-flame ionization detection (GC-FID) on subsamples from the same vials. The procedure is particularly relevant for field studies in remote areas where chromatography equipment and supplies are not readily available, offering a practical, cheaper, and more efficient solution for measuring methane and other dissolved greenhouse gas concentrations in aquatic systems.


Subject(s)
Ecosystem , Methane , Methane/analysis , Spectrum Analysis/methods , Spectrum Analysis/instrumentation , Chromatography, Gas/methods , Chromatography, Gas/instrumentation
6.
Lasers Med Sci ; 39(1): 193, 2024 Jul 25.
Article in English | MEDLINE | ID: mdl-39052099

ABSTRACT

Laser therapy has been widely used to treat port-wine stains (PWS) and other cutaneous vascular lesions via selective photothermolysis. Animal models are a valuable tool for investigating thermal responses beneath the skin. However, in previous animal experiments, such as the dorsal skin chamber model, one side of the skin was removed, resulting in the loss of mechanical support for the target blood vessel. In this study, the optical clearing technique was applied to the dorsal skin, allowing direct observation of real thermal responses within the tissue without removing the covering skin. The target blood vessels were irradiated with a pulsed 1064 nm Nd: YAG laser. The corresponding thermal responses were recorded using a CCD camera. Additionally, variations in skin reflectance spectra were measured before and after laser irradiation. Due to the optical clearing and reflectance spectra measurement, vessel responses such as contraction, reperfusion, and full occlusion were correlated with specific variation patterns in reflectance spectral signals.


Subject(s)
Lasers, Solid-State , Skin , Animals , Skin/radiation effects , Skin/blood supply , Lasers, Solid-State/therapeutic use , Blood Vessels/radiation effects , Spectrum Analysis/methods , Port-Wine Stain/radiotherapy
7.
PLoS One ; 19(7): e0305254, 2024.
Article in English | MEDLINE | ID: mdl-39052686

ABSTRACT

Advanced optical neuromonitoring of cerebral hemodynamics with hybrid diffuse optical spectroscopy (DOS) and diffuse correlation spectroscopy (DCS) methods holds promise for non-invasive characterization of brain health in critically ill patients. However, the methods' fiber-coupled patient interfaces (probes) are challenging to apply in emergent clinical scenarios that require rapid and reproducible attachment to the head. To address this challenge, we developed a novel chassis-based optical probe design for DOS/DCS measurements and validated its measurement accuracy and reproducibility against conventional, manually held measurements of cerebral hemodynamics in pediatric swine (n = 20). The chassis-based probe design comprises a detachable fiber housing which snaps into a 3D-printed, circumferential chassis piece that is secured to the skin. To validate its reproducibility, eight measurement repetitions of cerebral tissue blood flow index (BFI), oxygen saturation (StO2), and oxy-, deoxy- and total hemoglobin concentration were acquired at the same demarcated measurement location for each pig. The probe was detached after each measurement. Of the eight measurements, four were acquired by placing the probe into a secured chassis, and four were visually aligned and manually held. We compared the absolute value and intra-subject coefficient of variation (CV) of chassis versus manual measurements. No significant differences were observed in either absolute value or CV between chassis and manual measurements (p > 0.05). However, the CV for BFI (mean ± SD: manual, 19.5% ± 9.6; chassis, 19.0% ± 10.8) was significantly higher than StO2 (manual, 5.8% ± 6.7; chassis, 6.6% ± 7.1) regardless of measurement methodology (p<0.001). The chassis-based DOS/DCS probe design facilitated rapid probe attachment/re-attachment and demonstrated comparable accuracy and reproducibility to conventional, manual alignment. In the future, this design may be adapted for clinical applications to allow for non-invasive monitoring of cerebral health during pediatric critical care.


Subject(s)
Cerebrovascular Circulation , Optical Fibers , Animals , Swine , Cerebrovascular Circulation/physiology , Reproducibility of Results , Spectrum Analysis/methods , Spectrum Analysis/instrumentation , Brain/physiology , Equipment Design , Hemodynamics , Hemoglobins/analysis , Oxygen/metabolism , Oxygen/analysis
8.
Methods Mol Biol ; 2839: 243-247, 2024.
Article in English | MEDLINE | ID: mdl-39008258

ABSTRACT

Ferrochelatases (E.C. 4.99.1.1) catalyze the insertion of ferrous iron into either protoporphyrin IX to make protoheme IX or coproporphyrin III to make coproheme III. Ferrochelatase activity in extracts or purified protein can be measured via several assays. Here, we describe a rapid real-time direct spectroscopic ferrochelatase assay for both protoporphyrin and coproporphyrin ferrochelatases.


Subject(s)
Enzyme Assays , Ferrochelatase , Protoporphyrins , Ferrochelatase/metabolism , Ferrochelatase/chemistry , Ferrochelatase/genetics , Protoporphyrins/chemistry , Protoporphyrins/metabolism , Enzyme Assays/methods , Coproporphyrins/metabolism , Coproporphyrins/chemistry , Spectrum Analysis/methods , Humans
9.
Radiat Prot Dosimetry ; 200(11-12): 979-982, 2024 Jul 17.
Article in English | MEDLINE | ID: mdl-39016477

ABSTRACT

Determination of uranium isotopes in ground water plays a key role in assessment of geochemical condition of ground water and for estimating ingestion dose received by the general public because of uranium intake through drinking water. An attempt has been made in the present study to estimate isotopic composition and activity ratios (AR) of uranium isotopes by analysing the ground water samples using alpha spectrometry. Associated age-dependent ingestion dose was also calculated for the public of different age groups. 238U, 235U and 234U activity concentration was found to vary in the ranges of 5.85 ± 1.19 to 76.67 ± 4.16, < 0.90 to 3.15 ± 0.84 and 6.52 ± 1.25 to 107.02 ± 4.92 mBq/L, respectively. 235U/238U AR varies from 0.038 to 0.068 with an average of 0.047 which is close to 0.046 implies that uranium in the ground water is from natural origin. Uranium concentration was found to vary in the range of 0.47 ± 0.10 µg/L to 6.20 ± 0.34 µg/L with a mean value of 3.01 ± 0.23 µg/L, which is much lower than national as well as international recommendation value. Annual ingestion dose to the public of all age groups for uranium intake through drinking water ranges from 0.60 ± 0.11 to 19.50 ± 1.03 µSv/y.


Subject(s)
Radiation Dosage , Radiation Monitoring , Uranium , Water Pollutants, Radioactive , Uranium/analysis , Water Pollutants, Radioactive/analysis , Humans , Radiation Monitoring/methods , Drinking Water/analysis , Groundwater/analysis , Child , Adult , Age Factors , Alpha Particles , Spectrum Analysis/methods , Adolescent , Child, Preschool , Young Adult
10.
Radiat Prot Dosimetry ; 200(11-12): 1132-1137, 2024 Jul 17.
Article in English | MEDLINE | ID: mdl-39016493

ABSTRACT

KAlpakkam MINI reactor (KAMINI) is a 233U fuelled research reactor has various neutron irradiation locations for experimental purposes. The pit at the south beam end of KAMINI reactor is being extensively utilised for neutron attenuation experiments in prospective shielding materials as well as for neutron radiography. During reactor operation, it will be closed by a movable shield. A vault door is located above the shield and the movable shield is used to attenuate streaming neutrons and gamma-rays during reactor operation. Even with the shield, there exists significant dose because of streaming neutrons and gamma rays. Its variation depends on the power of the reactor. The neutron and gamma dose rates close to the south beam vault door have recently been found to be 275-300 µSv/h and 175-200 µSv/h, respectively, when the reactor is operating at 10 kW. In order to characterise the streaming neutron spectra of vault door place for the first time, measurements are done using the Nested Neutron Spectrometer. Along with the neutron flux, neutron mean energy and ambient dose-equivalent rate are also measured and compared with earlier measurements carried out inside the south beam pit. It is observed that the presence of paraffin shield reduces the neutron average energy from 370 to 178 keV. Apart from energy reduction, 10 kW normalised neutron flux of south beam pit is also attenuated by the shield by 25 000 times and it is found that the neutron spectrum of the measured location is also more thermalized. Neutron reference data of the location are generated.


Subject(s)
Gamma Rays , Neutrons , Nuclear Reactors , Radiation Dosage , Radiation Protection , Radiation Protection/methods , Radiation Protection/instrumentation , Radiation Monitoring/methods , Radiation Monitoring/instrumentation , Equipment Design , Spectrum Analysis/instrumentation , Spectrum Analysis/methods , Humans , Thorium/analysis , Uranium
11.
Methods Mol Biol ; 2819: 519-534, 2024.
Article in English | MEDLINE | ID: mdl-39028522

ABSTRACT

Acoustic force spectroscopy (AFS) is a single-molecule micromanipulation technique that uses sound waves to exert force on surface-tethered DNA molecules in a microfluidic chamber. As large numbers of individual protein-DNA complexes are tracked in parallel, AFS provides insight into the individual properties of such complexes as well as their population averages. In this chapter, we describe in detail how to perform AFS experiments specifically on bare DNA, protein-DNA complexes, and how to extract their (effective) persistence length and contour length from force-extension relations.


Subject(s)
Chromatin , DNA , DNA/chemistry , Chromatin/chemistry , Chromatin/metabolism , Spectrum Analysis/methods , Acoustics , Microscopy, Atomic Force/methods , Single Molecule Imaging/methods , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/metabolism
12.
Int J Biol Macromol ; 275(Pt 2): 133715, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38977048

ABSTRACT

The fundamental binding of single-stranded (ssDNA) and double-stranded DNA (dsDNA) with graphene oxide-Ag nanocomposites (GO-AgNCPs) has been systematically investigated by multi spectroscopic methods, i.e. ultraviolet-visible (UV-vis) absorption, fluorescence spectroscopy, and circular dichroism (CD). The experimental and theoretical results demonstrate that both ssDNA and dsDNA can be adsorbed onto the GO-AgNCPs surface. All of the evidence indicated that there were relatively strong binding of ssDNA/dsDNA with GO-AgNCPs. The article compares the differences in binding between the two types of DNA and the nanomaterials using spectroscopic and thermodynamic data. UV-vis absorption spectroscopy experiments indicate that the characteristic absorbance intensity of both ss DNA and ds DNA increases, but the rate of change in absorbance is different. The fluorescence results revealed that ss/dsDNA could interact with the GO-AgNCPs surface, in spite of the different binding affinities. The Ka value of ssDNA binding with GO-AgNCPs is greater than that of dsDNA at each constant temperature, indicating that the affinity of dsDNA toward GO-AgNCPs is comparatively weak. Molecular docking studies have corroborated the mentioned experimental results. The calculated thermodynamic parameters showed that the binding process was thermodynamically spontaneous, van der Waals force and hydrogen bonding played predominant roles in the binding process. The mechanism of ss/ds DNA binding with GO-AgNCPs was also investigated, and the results indicated that GO-AgNCPs directly binds to the minor groove of ss/ds DNA by replacing minor groove binders.


Subject(s)
DNA, Single-Stranded , DNA , Graphite , Nanocomposites , Silver , Thermodynamics , Graphite/chemistry , Silver/chemistry , Nanocomposites/chemistry , DNA, Single-Stranded/chemistry , DNA, Single-Stranded/metabolism , DNA/chemistry , DNA/metabolism , Molecular Docking Simulation , Spectrometry, Fluorescence , Spectrum Analysis , Circular Dichroism
13.
J Phys Chem Lett ; 15(31): 7832-7839, 2024 Aug 08.
Article in English | MEDLINE | ID: mdl-39052610

ABSTRACT

Multidrug efflux pumps, especially those belonging to the class of resistance-nodulation-division (RND), are the key contributors to the rapidly growing multidrug resistance in Gram-negative bacteria. Understanding the role of efflux pumps in real-time drug transport dynamics across the complex dual-cell membrane envelope of Gram-negative bacteria is thus crucial for developing efficient antibiotics against them. Here, we employ second harmonic generation-based nonlinear spectroscopy to study the role of the tripartite efflux pump and its individual components. We systematically investigate the effect of periplasmic adaptor protein AcrA, inner membrane transporter protein AcrB, and outer membrane channel TolC on the overall drug transport in live Acr-type Escherichia coli and its mutant strain cells. Our results reveal that when one of its components is missing, the tripartite AcrAB-TolC efflux pump machinery in Escherichia coli can effectively function as a bipartite system, a fact that has never been demonstrated in live Gram-negative bacteria.


Subject(s)
Anti-Bacterial Agents , Escherichia coli Proteins , Escherichia coli , Multidrug Resistance-Associated Proteins , Escherichia coli/metabolism , Escherichia coli/drug effects , Escherichia coli Proteins/metabolism , Escherichia coli Proteins/chemistry , Multidrug Resistance-Associated Proteins/metabolism , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/metabolism , Membrane Transport Proteins/metabolism , Membrane Transport Proteins/chemistry , Bacterial Outer Membrane Proteins/metabolism , Bacterial Outer Membrane Proteins/chemistry , Spectrum Analysis/methods , Carrier Proteins/metabolism , Carrier Proteins/chemistry , Biological Transport , Lipoproteins
14.
Anal Chem ; 96(28): 11508-11515, 2024 07 16.
Article in English | MEDLINE | ID: mdl-38953489

ABSTRACT

26% of the world's population lacks access to clean drinking water; clean water and sanitation are major global challenges highlighted by the UN Sustainable Development Goals, indicating water security in public water systems is at stake today. Water monitoring using precise instruments by skilled operators is one of the most promising solutions. Despite decades of research, the professionalism-convenience trade-off when monitoring ubiquitous metal ions remains the major challenge for public water safety. Thus, to overcome these disadvantages, an easy-to-use and highly sensitive visual method is desirable. Herein, an innovative strategy for one-to-nine metal detection is proposed, in which a novel thiourea spectroscopic probe with high 9-metal affinity is synthesized, acting as "one", and is detected based on the 9 metal-thiourea complexes within portable spectrometers in the public water field; this is accomplished by nonspecialized personnel as is also required. During the processing of multimetal analysis, issues arise due to signal overlap and reproducibility problems, leading to constrained sensitivity. In this innovative endeavor, machine learning (ML) algorithms were employed to extract key features from the composite spectral signature, addressing multipeak overlap, and completing the detection within 30-300 s, thus achieving a detection limit of 0.01 mg/L and meeting established conventional water quality standards. This method provides a convenient approach for public drinking water safety testing.


Subject(s)
Drinking Water , Water Pollutants, Chemical , Drinking Water/analysis , Water Pollutants, Chemical/analysis , Risk Assessment , Thiourea/chemistry , Spectrum Analysis/methods , Machine Learning
15.
Int J Biol Macromol ; 276(Pt 1): 133489, 2024 Sep.
Article in English | MEDLINE | ID: mdl-38964679

ABSTRACT

Indole-based bis-acylhydrazone compounds can inhibit the activity of α-glucosidase and control the concentration of blood glucose. In this paper, the characteristics of three indole-based bis-acylhydrazone compounds with different inhibitory activities of α-glucosidase as well as the interaction with α-glucosidase were studied by experiments and computational simulation techniques. Enzyme kinetic and spectral experiments showed that the indole-based bis-acylhydrazone compounds were able to inhibit enzyme activity through mixed inhibition dominated by competitive inhibition, and during the binding reaction, indole-based bis-acylhydrazone compounds can quench the intrinsic fluorescence of α-glucosidase through static quenching and an aggregation of the indole-based bis-acylhydrazone with α-glucosidase produces a stable complex with a molar ratio of 1:1, and the combination of indole-based bis-acylhydrazone compounds could lead to slight change in the conformation of α-glucosidase. The theoretical simulation demonstrated that the stability of the complex systems was positively correlated with the inhibitory activity of indole-based bis-acylhydrazone compounds, and the indole-based bis-acylhydrazone compounds occupied the active site in the multi-ligand system, resulting in a significant decrease in the binding ability of starch to active amino acids. These results suggested that indole-based bis-acylhydrazone compound was expected to be a new type of α-glucosidase inhibitor.


Subject(s)
Glycoside Hydrolase Inhibitors , Hydrazones , Indoles , alpha-Glucosidases , alpha-Glucosidases/metabolism , alpha-Glucosidases/chemistry , Glycoside Hydrolase Inhibitors/chemistry , Glycoside Hydrolase Inhibitors/pharmacology , Indoles/chemistry , Indoles/pharmacology , Hydrazones/chemistry , Hydrazones/pharmacology , Kinetics , Molecular Docking Simulation , Spectrum Analysis
16.
Int J Biol Macromol ; 276(Pt 1): 133677, 2024 Sep.
Article in English | MEDLINE | ID: mdl-38986981

ABSTRACT

Understanding of energetics of interactions between drug and protein is essential in pharmacokinetics and pharmacodynamics study. The binding affinity (K) helps in investigating how tightly or loosely drug is bound to protein. The binding, displacement, conformational change and stability study of drugs- gentamicin (GM), 5-fluorouracil (5FU), oxytetracycline (OTC) and rolitetracycline (RTC) with bovine serum albumin (BSA) has been carried out in presence of each other drug by fluorescence, UV-visible spectroscopy, molecular docking, circular dichroism techniques and thermal denaturation method. The site marker study and docking methods have confirmed that 5FU and GM are able to bind at site 1 and OTC and RTC at site II of BSA. The order of their binding affinities with BSA for the binary system were as GM <5FU < OTC < RTC with the order of 102 < 103 < 105 < 105-6 M-1. The displacement study has shown that higher affinity drug decreases the equilibrium constant of another drug already in bound state with BSA if both these drugs are having the same binding site. Therefore 5FU, GM (binding site 1) drugs were not able to displace OTC and RTC (binding site 2) and vice-versa as they are binding at two different sites. The binding constant values were found to be decreasing with increasing temperature for all the systems involved which suggests static or mixed type of quenching, however can only confirmed with the help of TCSPC technique. The ΔG0 (binding energy) obtained from docking method were in accordance with the ITC method. From molecular docking we have determined the amino acid residues involved in binding process for binary and ternary systems by considering first rank minimum binding energy confirmation. From CD it has been observed that RTC causes most conformational change in secondary and tertiary structure of BSA due to the presence of pyrrole ring. OTC-RTC with higher affinity showed highest melting temperature Tm values while low affinity drugs in (5FU-GM) combination showed lowest Tm value. 5FU showed large endothermic denaturation enthalpy ΔHd0 due to the presence of highly electronegative fluorine atom in the pyridine analogue.


Subject(s)
Fluorouracil , Gentamicins , Molecular Docking Simulation , Oxytetracycline , Protein Binding , Serum Albumin, Bovine , Serum Albumin, Bovine/chemistry , Serum Albumin, Bovine/metabolism , Fluorouracil/chemistry , Oxytetracycline/chemistry , Gentamicins/chemistry , Binding Sites , Animals , Cattle , Calorimetry , Thermodynamics , Spectrum Analysis , Circular Dichroism , Biophysical Phenomena
17.
Int J Biol Macromol ; 276(Pt 1): 133895, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39019360

ABSTRACT

Efficient harnessing of heavy metal pollution is an urgent environmental task. Herein, magnetic bio adsorbent (MB) based on Fe3O4-chitosan-graphene oxide composite was fabricated via one step co-precipitation for adsorptive remediation of Cu(II). Remediation efficiency was evaluated by batch adsorption, meanwhile adsorption mechanism was elucidated by spectroscopic tests (XPS, UV-Vis absorption and fluorescent emission spectra), statistical physics formalism, isotherm and kinetic fittings. Results show, MB reaches adsorption percent and quantity of 87.61 % and 350.43 mg·g-1 for Cu(II) in 30 min. By virtue of paramagnetism, MB can be readily recovered with a permanent magnet for easy regeneration and cyclic use, thereby retaining adsorption quantity 279.99 mg·g-1 at the fifth cycle. The Freundlich and pseudo second order model satisfactorily describes the adsorption, designating chemical interaction as the rate limiting step. Statistical physics calculation suggests two points. (1) Multi-ionic adsorption mechanism with exothermic, spontaneous and energy lowering feature. (2) Density of adsorption sites increases with temperature, resulting in improved adsorption capacity. Spectroscopic analysis confirms the involvement of CO, CO, -NH2 in Cu(II) uptake via electron donation. These explorations contribute with novel theoretical illumination for understanding both the thermodynamic feature and atomic scale mechanism of common pollutants adsorption by bio adsorbent like Fe3O4-chitosan-graphene oxide.


Subject(s)
Chitosan , Copper , Graphite , Graphite/chemistry , Chitosan/chemistry , Copper/chemistry , Adsorption , Kinetics , Water Pollutants, Chemical/chemistry , Spectrum Analysis , Thermodynamics
18.
Chem Phys Lipids ; 263: 105421, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39067642

ABSTRACT

This study explores the impact of the antimicrobial peptide magainin 2 (Mag2) on lipid bilayers with varying compositions. We employed high-resolution atomic force microscopy (AFM) to reveal a dynamic spectrum of structural changes induced by Mag2. Our AFM imaging unveiled distinct structural alterations in zwitterionic POPC bilayers upon Mag2 exposure, notably the formation of nanoscale depressions within the bilayer surface, which we term as "surface pores" to differentiate them from transmembrane pores. These surface pores are characterized by a limited depth that does not appear to fully traverse the bilayer and reach the opposing leaflet. Additionally, our AFM-based force spectroscopy investigation on POPC bilayers revealed a reduction in bilayer puncture force (FP) and Young's modulus (E) upon Mag2 interaction, indicating a weakening of bilayer stability and increased flexibility, which may facilitate peptide insertion. The inclusion of anionic POPG into POPC bilayers elucidated its modulatory effects on Mag2 activity, highlighting the role of lipid composition in peptide-bilayer interactions. In contrast to surface pores, Mag2 treatment of E. coli total lipid extract bilayers resulted in increased surface roughness, which we describe as a fluctuation-like morphology. We speculate that the weaker cohesive interactions between heterogeneous lipids in E. coli bilayers may render them more susceptible to Mag2-induced perturbations. This could lead to widespread disruptions manifested as surface fluctuations throughout the bilayer, rather than the formation of well-defined pores. Together, our findings of nanoscale bilayer perturbations provide useful insights into the molecular mechanisms governing Mag2-membrane interactions.


Subject(s)
Lipid Bilayers , Magainins , Microscopy, Atomic Force , Phosphatidylcholines , Lipid Bilayers/chemistry , Magainins/chemistry , Phosphatidylcholines/chemistry , Phosphatidylglycerols/chemistry , Spectrum Analysis
19.
Int J Biol Macromol ; 274(Pt 2): 133370, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38917913

ABSTRACT

In this paper, the interaction of three berberine mid-chain fatty acid salts ([BBR][FAs]), viz. berberine caproate ([BBR][CAP]), berberine heptylate ([BBR][HEP]) and berberine octoate ([BBR][OCT]), with bovine serum albumin (BSA) was studied by means of UV-visible absorption spectroscopy, fluorescence spectroscopy, fourier transform infrared spectroscopy (FT-IR) and molecular docking techniques. Fluorescence experiments revealed that three berberine salts quench the fluorescence of BSA by static quenching mechanism resulted from a stable [BBR][FAs]-BSA complex formation. The stoichiometric numbers of [BBR][FAs]-BSA complexes were found to be 1:1. Synchronous and three-dimensional fluorescence spectra as well as FT-IR demonstrated that the binding of [BBR][FAs] altered the microenvironment and conformation of BSA. The binding average distance from [BBR][FAs] to BSA (3.2-3.5 nm) was determined according to Förster energy transfer theory. Site probe investigation showed that [BBR][FAs] bound to BSA active site I (sub-domain IIA). The binding promotes the esterase-like activity of BSA. The molecular docking results confirmed the fluorescence competition findings and provided the type of binding forces. Furthermore, the relationship between the anionic chain length of [BBR][FAs] and the interaction was explored, and the positive correlation was found.


Subject(s)
Berberine , Fatty Acids , Molecular Docking Simulation , Protein Binding , Serum Albumin, Bovine , Serum Albumin, Bovine/chemistry , Serum Albumin, Bovine/metabolism , Berberine/chemistry , Berberine/metabolism , Cattle , Animals , Fatty Acids/chemistry , Fatty Acids/metabolism , Spectrometry, Fluorescence , Spectroscopy, Fourier Transform Infrared , Salts/chemistry , Spectrum Analysis , Binding Sites
20.
Int J Pharm ; 660: 124336, 2024 Jul 20.
Article in English | MEDLINE | ID: mdl-38871136

ABSTRACT

Advanced manufacturing technologies such as continuous processing require fast information on the quality of intermediates and products. Process analytical technologies (PAT) to monitor many critical quality attributes (CQAs) have been developed and successfully implemented in pharmaceutical industry. However, there are some CQAs, which still have to be measured off-line with significant effort due to the lack of suitable PAT sensors. Two prominent examples are the in-vitro dissolution and the tablet hardness. Both are obtained via destructive measurement, and the dissolution is tedious and time-consuming to determine. In this study, these two CQAs were predicted via correlation with the optical porosity of tablets. The optical porosity was measured via a novel combination of gas in scattering media absorption spectroscopy (GASMAS) and photon time of flight spectroscopy (pTOFS) with a SpectraPore instrument. The approach was tested in a continuous tableting line and showed promising results in predicting the amount of drug released after specific dissolution times as well as the tablet hardness. This indicates that the measurement of optical porosity can support control strategies within the real-time release testing (RTRT) concept.


Subject(s)
Drug Liberation , Hardness , Solubility , Tablets , Porosity , Technology, Pharmaceutical/methods , Spectrum Analysis/methods
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