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1.
Front Cell Infect Microbiol ; 14: 1401462, 2024.
Article in English | MEDLINE | ID: mdl-39091675

ABSTRACT

Introduction: Bacterial urinary tract infections (UTI) are among the most common infectious diseases worldwide. The rise of multidrug-resistant (MDR) uropathogenic Escherichia coli (UPEC) UTI cases is a significant threat to healthcare systems. Several probiotic bacteria have been proposed as an alternative to combat MDR UTI. Lactic acid bacteria in the genus Limosilactobacillus are some of the most studied and used probiotics. However, strain-specific effects play a critical role in probiotic properties. L. reuteri KUB-AC5 (AC5), isolated from the chicken gut, confers antimicrobial and immunobiotic effects against some human pathogens. However, the antibacterial and immune modulatory effects of AC5 on UPEC have never been explored. Methods: Here, we investigated both the direct and indirect effects of AC5 against UPEC isolates (UTI89, CFT073, and clinical MDR UPEC AT31) in vitro. Using a spot-on lawn, agar-well diffusion, and competitive growth assays, we found that viable AC5 cells and cell-free components of this probiotic significantly reduced the UPEC growth of all strains tested. The human bladder epithelial cell line UM-UC-3 was used to assess the adhesion and pathogen-attachment inhibition properties of AC5 on UPEC. Results and discussion: Our data showed that AC5 can attach to UM-UC-3 and decrease UPEC attachment in a dose-dependent manner. Pretreatment of UPEC-infected murine macrophage RAW264.7 cells with viable AC5 (multiplicity of infection, MOI = 1) for 24 hours enhanced macrophage-killing activity and increased proinflammatory (Nos2, Il6, and Tnfa) and anti-inflammatory (Il10) gene expression. These findings indicate the gut-derived AC5 probiotic could be a potential urogenital probiotic against MDR UTI.


Subject(s)
Limosilactobacillus reuteri , Macrophages , Probiotics , Uropathogenic Escherichia coli , Probiotics/pharmacology , Uropathogenic Escherichia coli/drug effects , Uropathogenic Escherichia coli/immunology , Limosilactobacillus reuteri/physiology , Animals , Mice , Macrophages/immunology , Macrophages/microbiology , Humans , Urothelium/microbiology , Urinary Tract Infections/microbiology , Urinary Tract Infections/prevention & control , Cell Line , Escherichia coli Infections/microbiology , Escherichia coli Infections/prevention & control , RAW 264.7 Cells , Epithelial Cells/microbiology , Chickens , Bacterial Adhesion/drug effects
2.
Microb Pathog ; 193: 106789, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38972365

ABSTRACT

Urinary tract infections (UTIs) by Uropathogenic Escherichia coli (UPEC) are a significant health concern, especially due to the increasing prevalence of antibiotic resistance. This study focuses on isolating and characterizing bacteriophages specific to UPEC strains isolated from UTI samples. The isolated phages were assessed for their ability to target and lyse UPEC in vitro, focusing on their efficacy in disrupting biofilms, a key virulence factor contributing to UTI recurrence and antibiotic resistance. The morphological structure observed by TEM belongs to Myoviridae, the phage exhibited icosahedral symmetry with a long non-constricting tail, the approximate measurement of the phage head was 39 nm in diameter, and the phage tail was 105.317 nm in length. One-step growth experiments showed that the latent period was approximately 20 min, followed by a rise period of 40 min, and a growth plateau was reached within 20 min and the burst size observed was 26 phages/infected bacterial cells. These phages were capable of killing cells within the biofilms, leading to a reduction in living cell counts after a single treatment. This study highlights the potential of phages to play a significant role in disrupting, inactivating, and destroying Uropathogenic Escherichia coli (UPEC) biofilms. Such findings could be instrumental in developing treatment strategies that complement antibiotics and disinfectants. The phage-antibiotic synergistic activity was compared to have the possibility to facilitate the advancement of focused and enduring alternatives to traditional antibiotic therapies for UTIs.


Subject(s)
Anti-Bacterial Agents , Bacteriophages , Biofilms , Escherichia coli Infections , Urinary Tract Infections , Uropathogenic Escherichia coli , Biofilms/drug effects , Biofilms/growth & development , Urinary Tract Infections/microbiology , Uropathogenic Escherichia coli/drug effects , Uropathogenic Escherichia coli/virology , Anti-Bacterial Agents/pharmacology , Humans , Escherichia coli Infections/microbiology , Bacteriophages/isolation & purification , Bacteriophages/physiology , Phage Therapy , Myoviridae/isolation & purification , Myoviridae/physiology , Drug Synergism , Microbial Sensitivity Tests
3.
Arch Microbiol ; 206(8): 344, 2024 Jul 05.
Article in English | MEDLINE | ID: mdl-38967798

ABSTRACT

Uropathogenic Escherichia coli, the most common cause for urinary tract infections, forms biofilm enhancing its antibiotic resistance. To assess the effects of compounds on biofilm formation of uropathogenic Escherichia coli UMN026 strain, a high-throughput combination assay using resazurin followed by crystal violet staining was optimized for 384-well microplate. Optimized assay parameters included, for example, resazurin and crystal violet concentrations, and incubation time for readouts. For the assay validation, quality parameters Z' factor, coefficient of variation, signal-to-noise, and signal-to-background were calculated. Microplate uniformity, signal variability, edge well effects, and fold shift were also assessed. Finally, a screening with known antibacterial compounds was conducted to evaluate the assay performance. The best conditions found were achieved by using 12 µg/mL resazurin for 150 min and 0.023% crystal violet. This assay was able to detect compounds displaying antibiofilm activity against UMN026 strain at sub-inhibitory concentrations, in terms of metabolic activity and/or biomass.


Subject(s)
Anti-Bacterial Agents , Biofilms , Gentian Violet , High-Throughput Screening Assays , Oxazines , Uropathogenic Escherichia coli , Xanthenes , Biofilms/drug effects , Biofilms/growth & development , Uropathogenic Escherichia coli/drug effects , Uropathogenic Escherichia coli/physiology , High-Throughput Screening Assays/methods , Xanthenes/chemistry , Anti-Bacterial Agents/pharmacology , Gentian Violet/metabolism , Oxazines/pharmacology , Oxazines/metabolism , Oxazines/chemistry , Microbial Sensitivity Tests , Urinary Tract Infections/microbiology , Humans
4.
Sci Rep ; 14(1): 15387, 2024 07 04.
Article in English | MEDLINE | ID: mdl-38965339

ABSTRACT

Probiotics offer a promising prophylactic approach against various pathogens and represent an alternative strategy to combat biofilm-related infections. In this study, we isolated vaginal commensal microbiota from 54 healthy Indian women to investigate their probiotic traits. We primarily explored the ability of cell-free supernatant (CFS) from Lactobacilli to prevent Uropathogenic Escherichia coli (UPEC) colonization and biofilm formation. Our findings revealed that CFS effectively reduced UPEC's swimming and swarming motility, decreased cell surface hydrophobicity, and hindered matrix production by downregulating specific genes (fimA, fimH, papG, and csgA). Subsequent GC-MS analysis identified Tryptamine, a monoamine compound, as the potent bioactive substance from Lactobacilli CFS, inhibiting UPEC biofilms with an MBIC of 4 µg/ml and an MBEC of 8 µg/ml. Tryptamine induced significant changes in E. coli colony biofilm morphology, transitioning from the Red, Dry, and Rough (RDAR) to the Smooth and White phenotype, indicating reduced extracellular matrix production. Biofilm time-kill assays demonstrated a four-log reduction in UPEC viability when treated with Tryptamine, highlighting its potent antibacterial properties, comparable to CFS treatment. Biofilm ROS assays indicated a significant elevation in ROS generation within UPEC biofilms, suggesting a potential antibacterial mechanism. Gene expression studies with Tryptamine-treated samples showed a reduction in expression of curli gene (csgA), consistent with CFS treatment. This study underscores the potential of Tryptamine from probiotic Lactobacilli CFS as a promising antibiofilm agent against UPEC biofilms.


Subject(s)
Biofilms , Lactobacillus , Probiotics , Tryptamines , Uropathogenic Escherichia coli , Vagina , Biofilms/drug effects , Biofilms/growth & development , Humans , Tryptamines/pharmacology , Female , Uropathogenic Escherichia coli/drug effects , Uropathogenic Escherichia coli/physiology , Probiotics/pharmacology , Vagina/microbiology , Lactobacillus/drug effects , Lactobacillus/metabolism , Lactobacillus/physiology , Escherichia coli Infections/microbiology , Escherichia coli Infections/drug therapy , Escherichia coli Infections/prevention & control , Adult , Anti-Bacterial Agents/pharmacology
5.
Microb Drug Resist ; 30(7): 304-313, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38949898

ABSTRACT

Little is known about the characteristics of uropathogenic Escherichia coli (UPEC) associated with recurrent urinary tract infections (RUTIs). The present study aimed to analyze the phenotypic antimicrobial resistance of recurrent UPEC isolates attributable to either relapse or reinfection. A total of 140 E. coli strains were isolated from 70 outpatients with RUTIs. All isolates were analyzed by random amplified polymorphic DNA-polymerase chain reaction to evaluate genetic similarity between the first and second isolates. We found that 64.2% (45/70) of outpatients had a relapse with the primary infecting E. coli strain and 35.7% (25/70) had reinfection with a new E. coli strain. Compared with reinfecting strains, relapse UPEC isolates exhibited much higher antimicrobial resistance; 89% of these isolates were multidrug-resistant and 46.6% were extended-spectrum ß-lactamase producers. Our study provides evidence that RUTIs are mainly driven by the persistence of the original strain in the host (relapses) despite appropriate antibiotic treatments, and only RUTIs attributed to relapses seem to favor multidrug resistance in UPEC isolates.


Subject(s)
Anti-Bacterial Agents , Drug Resistance, Multiple, Bacterial , Escherichia coli Infections , Microbial Sensitivity Tests , Recurrence , Urinary Tract Infections , Uropathogenic Escherichia coli , Humans , Urinary Tract Infections/microbiology , Urinary Tract Infections/drug therapy , Uropathogenic Escherichia coli/drug effects , Uropathogenic Escherichia coli/genetics , Uropathogenic Escherichia coli/isolation & purification , Anti-Bacterial Agents/pharmacology , Escherichia coli Infections/microbiology , Escherichia coli Infections/drug therapy , Drug Resistance, Multiple, Bacterial/genetics , Female , Male , Middle Aged , Adult , beta-Lactamases/genetics , Aged , Random Amplified Polymorphic DNA Technique
6.
Virulence ; 15(1): 2367648, 2024 Dec.
Article in English | MEDLINE | ID: mdl-38899601

ABSTRACT

The emergence of multidrug-resistant bacteria poses a significant threat to human health, necessitating a comprehensive understanding of their underlying mechanisms. Uropathogenic Escherichia coli (UPEC), the primary causative agent of urinary tract infections, is frequently associated with multidrug resistance and recurrent infections. To elucidate the mechanism of resistance of UPEC to beta-lactam antibiotics, we generated ampicillin-resistant UPEC strains through continuous exposure to low and high levels of ampicillin in the laboratory, referred to as Low AmpR and High AmpR, respectively. Whole-genome sequencing revealed that both Low and High AmpR strains contained mutations in the marR, acrR, and envZ genes. The High AmpR strain exhibited a single additional mutation in the nlpD gene. Using protein modeling and qRT-PCR analyses, we validated the contributions of each mutation in the identified genes to antibiotic resistance in the AmpR strains, including a decrease in membrane permeability, increased expression of multidrug efflux pump, and inhibition of cell lysis. Furthermore, the AmpR strain does not decrease the bacterial burden in the mouse bladder even after continuous antibiotic treatment in vivo, implicating the increasing difficulty in treating host infections caused by the AmpR strain. Interestingly, ampicillin-induced mutations also result in multidrug resistance in UPEC, suggesting a common mechanism by which bacteria acquire cross-resistance to other classes of antibiotics.


Subject(s)
Ampicillin , Anti-Bacterial Agents , Drug Resistance, Multiple, Bacterial , Escherichia coli Infections , Mutation , Urinary Tract Infections , Uropathogenic Escherichia coli , Uropathogenic Escherichia coli/genetics , Uropathogenic Escherichia coli/drug effects , Animals , Drug Resistance, Multiple, Bacterial/genetics , Urinary Tract Infections/microbiology , Escherichia coli Infections/microbiology , Mice , Anti-Bacterial Agents/pharmacology , Ampicillin/pharmacology , Escherichia coli Proteins/genetics , Escherichia coli Proteins/metabolism , Female , Humans , Microbial Sensitivity Tests , Whole Genome Sequencing
7.
mBio ; 15(7): e0104824, 2024 Jul 17.
Article in English | MEDLINE | ID: mdl-38874412

ABSTRACT

More than half of women will experience a urinary tract infection (UTI) with most cases caused by uropathogenic Escherichia coli (UPEC). Bacterial swimming motility enhances UPEC pathogenicity, resulting in more severe disease outcomes including kidney infection. Surprisingly, the connection between motility and iron limitation is mostly unexplored despite the lack of free iron available in the host. We sought to investigate a potential connection between iron restriction and regulation of motility in UPEC. We cultured E. coli CFT073, a prototypical UPEC strain, under iron limitation and observed that CFT073 had elevated fliC (flagella) promoter activity, and this iron-specific response was repressed by the addition of exogenous iron. We confirmed increased flagellar expression in CFT073 by measuring fliC transcript, FliC protein, and surface-expressed flagella under iron-limited conditions. Interestingly, known motility regulator flhDC did not have altered transcription under these conditions. To define the regulatory mechanism of this response, we constructed single knockouts of eight master regulators and found the iron-regulated response was lost in crp, arcA, and fis mutants. Thus, we focused on the five genes regulated by all three regulators. Of the five genes knocked out, the iron-regulated motility response was most strongly dysregulated in the lpdA mutant, which also resulted in significantly lowered fitness in the murine model of ascending UTI, both against the WT and a non-motile fliC mutant. Collectively, we demonstrated that iron-mediated motility in CFT073 is partially regulated by lpdA, which contributes to the understanding of how uropathogens differentially regulate motility mechanisms in the iron-restricted host. IMPORTANCE: Urinary tract infections (UTIs) are ubiquitous and responsible for over five billion dollars in associated health care costs annually. Both iron acquisition and motility are highly studied virulence factors associated with uropathogenic Escherichia coli (UPEC), the main causative agent of uncomplicated UTI. This work is innovative by providing mechanistic insight into the synergistic relationship between these two critical virulence properties. Here, we demonstrate that iron limitation has pleiotropic effects with consequences that extend beyond metabolism and impact other virulence mechanisms. Indeed, targeting iron acquisition as a therapy may lead to an undesirable enhancement of UPEC pathogenesis through increased motility. It is vital to understand the full breadth of UPEC pathogenesis to adequately respond to this common infection, especially with the increase of antibiotic-resistant pathogens.


Subject(s)
Escherichia coli Infections , Escherichia coli Proteins , Flagella , Gene Expression Regulation, Bacterial , Iron , Urinary Tract Infections , Uropathogenic Escherichia coli , Uropathogenic Escherichia coli/genetics , Uropathogenic Escherichia coli/drug effects , Uropathogenic Escherichia coli/metabolism , Escherichia coli Proteins/genetics , Escherichia coli Proteins/metabolism , Iron/metabolism , Animals , Escherichia coli Infections/microbiology , Mice , Urinary Tract Infections/microbiology , Flagella/genetics , Flagella/metabolism , Female , Virulence , Disease Models, Animal , Locomotion , Flagellin
8.
Arch Virol ; 169(7): 142, 2024 Jun 08.
Article in English | MEDLINE | ID: mdl-38851653

ABSTRACT

Uropathogenic Escherichia coli (UPEC) is the most common causative agent of urinary tract infections, and strains that are resistant to antibiotics are a major problem in treating these infections. Phage therapy is a promising alternative approach that can be used to treat infections caused by polyresistant bacterial strains. In the present study, 16 bacteriophages isolated from sewage and surface water were investigated. Phage host specificity was tested on a collection of 77 UPEC strains. The phages infected 2-44 strains, and 80% of the strains were infected by at least one phage. The susceptible E. coli strains belonged predominantly to the B2 phylogenetic group, including strains of two clones, CC131 and CC73, that have a worldwide distribution. All of the phages belonged to class Caudoviricetes and were identified as members of the families Straboviridae, Autographiviridae, and Drexlerviridae and the genera Kagunavirus, Justusliebigvirus, and Murrayvirus. A phage cocktail composed of six phages - four members of the family Straboviridae and two members of the family Autographiviridae - was prepared, and its antibacterial activity was tested in liquid medium. Complete suppression of bacterial growth was observed after 5-22 hours of cultivation, followed by partial regrowth. At 24 hours postinfection, the cocktail suppressed bacterial growth to 43-92% of control values. Similar results were obtained when testing the activity of the phage cocktail in LB and in artificial urine medium. The results indicate that our phage cocktail has potential to inhibit bacterial growth during infection, and they will therefore be preserved in the national phage bank, serving as valuable resources for therapeutic applications.


Subject(s)
Drug Resistance, Multiple, Bacterial , Host Specificity , Phylogeny , Uropathogenic Escherichia coli , Uropathogenic Escherichia coli/virology , Uropathogenic Escherichia coli/drug effects , Bacteriophages/classification , Bacteriophages/physiology , Bacteriophages/genetics , Bacteriophages/isolation & purification , Sewage/virology , Phage Therapy/methods , Humans , Anti-Bacterial Agents/pharmacology , Escherichia coli Infections/microbiology , Escherichia coli Infections/therapy
9.
J Infect Dev Ctries ; 18(5): 761-769, 2024 May 30.
Article in English | MEDLINE | ID: mdl-38865401

ABSTRACT

BACKGROUND: Uropathogenic Escherichia coli (UPEC) isolates, have a wide variety of virulence factors to promote colonization and survival in the urinary tract. This study aimed to evaluate adhesin genes, biofilm formation ability, antibiotic resistance profiles of UPEC strains, and the related risk factors in patients with UTIs caused by drug-resistant UPEC. METHODOLOGY: A total of 105 UPEC isolates were evaluated for biofilm formation using 96-well microtiter plates, the presence of adhesin genes by PCR assay and the antimicrobial susceptibility pattern using the disk diffusion method. Demographic and clinical characteristics of patients were investigated to identify predisposing factors for drug-resistant isolates. RESULTS: Out of 105 UPEC isolates, 84.8% were positive for biofilm formation. Biofilm-producing isolates exhibited a significantly higher prevalence of fimH, kpsMTII, csgA, afa/draBC, and pap adhesin genes compared to non-biofilm-producing strains (p < 0.05). The results also revealed that 52.4% of the isolates were ESBL-producing, and 84.8% were multidrug-resistant (MDR). Further analysis of antibiotic susceptibility among ESBL-producing strains showed the highest resistance rates to ampicillin, ciprofloxacin, and trimethoprim-sulfamethoxazole. Conversely, the highest susceptibility, in addition to carbapenems, was observed for fosfomycin, amikacin, cefoxitin, and nitrofurantoin. We identified hypertension as a potential risk factor for infection with ESBL-producing UPEC strains. CONCLUSIONS: Our results revealed a significant rate of drug resistance among UPEC isolates obtained from UTIs in our region. This underscores the importance of monitoring the empirical use of antibiotics and identifying specific risk factors in our geographical area to guide the selection of appropriate empirical treatment for UTIs.


Subject(s)
Biofilms , Escherichia coli Infections , Urinary Tract Infections , Uropathogenic Escherichia coli , Humans , Iran/epidemiology , Uropathogenic Escherichia coli/genetics , Uropathogenic Escherichia coli/drug effects , Urinary Tract Infections/microbiology , Urinary Tract Infections/epidemiology , Female , Risk Factors , Male , Biofilms/growth & development , Escherichia coli Infections/microbiology , Escherichia coli Infections/epidemiology , Adult , Middle Aged , Aged , Young Adult , Anti-Bacterial Agents/pharmacology , Microbial Sensitivity Tests , Virulence Factors/genetics , Adhesins, Escherichia coli/genetics , Adolescent , Child , Adhesins, Bacterial/genetics , Aged, 80 and over , Drug Resistance, Multiple, Bacterial/genetics , Polymerase Chain Reaction , Child, Preschool
10.
J Bacteriol ; 206(7): e0011224, 2024 Jul 25.
Article in English | MEDLINE | ID: mdl-38856220

ABSTRACT

Urinary tract infections (UTIs) are a major global health problem and are caused predominantly by uropathogenic Escherichia coli (UPEC). UTIs are a leading cause of prescription antimicrobial use. Incessant increase in antimicrobial resistance in UPEC and other uropathogens poses a serious threat to the current treatment practices. Copper is an effector of nutritional immunity that impedes the growth of pathogens during infection. We hypothesized that copper would augment the toxicity of select small molecules against bacterial pathogens. We conducted a small molecule screening campaign with a library of 51,098 molecules to detect hits that inhibit a UPEC ΔtolC mutant in a copper-dependent manner. A molecule, denoted as E. coli inhibitor or ECIN, was identified as a copper-responsive inhibitor of wild-type UPEC strains. Our gene expression and metal content analysis results demonstrate that ECIN works in concert with copper to exacerbate Cu toxicity in UPEC. ECIN has a broad spectrum of activity against pathogens of medical and veterinary significance including Acinetobacter baumannii, Pseudomonas aeruginosa, and methicillin-resistant Staphylococcus aureus. Subinhibitory levels of ECIN eliminate UPEC biofilm formation. Transcriptome analysis of UPEC treated with ECIN reveals induction of multiple stress response systems. Furthermore, we demonstrate that L-cysteine rescues the growth of UPEC exposed to ECIN. In summary, we report the identification and characterization of a novel copper-responsive small molecule inhibitor of UPEC.IMPORTANCEUrinary tract infection (UTI) is a ubiquitous infectious condition affecting millions of people annually. Uropathogenic Escherichia coli (UPEC) is the predominant etiological agent of UTI. However, UTIs are becoming increasingly difficult to resolve with antimicrobials due to increased antimicrobial resistance in UPEC and other uropathogens. Here, we report the identification and characterization of a novel copper-responsive small molecule inhibitor of UPEC. In addition to E. coli, this small molecule also inhibits pathogens of medical and veterinary significance including Acinetobacter baumannii, Pseudomonas aeruginosa, and methicillin-resistant Staphylococcus aureus.


Subject(s)
Anti-Bacterial Agents , Copper , Microbial Sensitivity Tests , Urinary Tract Infections , Uropathogenic Escherichia coli , Uropathogenic Escherichia coli/drug effects , Uropathogenic Escherichia coli/genetics , Copper/pharmacology , Anti-Bacterial Agents/pharmacology , Urinary Tract Infections/microbiology , Urinary Tract Infections/drug therapy , Small Molecule Libraries/pharmacology , Methicillin-Resistant Staphylococcus aureus/drug effects , Methicillin-Resistant Staphylococcus aureus/genetics , Gene Expression Regulation, Bacterial/drug effects , Escherichia coli Proteins/genetics , Escherichia coli Proteins/metabolism , Escherichia coli Proteins/antagonists & inhibitors , Pseudomonas aeruginosa/drug effects , Pseudomonas aeruginosa/genetics , Acinetobacter baumannii/drug effects , Acinetobacter baumannii/genetics , Escherichia coli Infections/microbiology , Escherichia coli Infections/drug therapy
11.
J Bacteriol ; 206(6): e0016224, 2024 Jun 20.
Article in English | MEDLINE | ID: mdl-38814092

ABSTRACT

Reducing growth and limiting metabolism are strategies that allow bacteria to survive exposure to environmental stress and antibiotics. During infection, uropathogenic Escherichia coli (UPEC) may enter a quiescent state that enables them to reemerge after the completion of successful antibiotic treatment. Many clinical isolates, including the well-characterized UPEC strain CFT073, also enter a metabolite-dependent, quiescent state in vitro that is reversible with cues, including peptidoglycan-derived peptides and amino acids. Here, we show that quiescent UPEC is antibiotic tolerant and demonstrate that metabolic flux in the tricarboxylic acid (TCA) cycle regulates the UPEC quiescent state via succinyl-CoA. We also demonstrate that the transcriptional regulator complex integration host factor and the FtsZ-interacting protein ZapE, which is important for E. coli division during stress, are essential for UPEC to enter the quiescent state. Notably, in addition to engaging FtsZ and late-stage cell division proteins, ZapE also interacts directly with TCA cycle enzymes in bacterial two-hybrid assays. We report direct interactions between the succinate dehydrogenase complex subunit SdhC, the late-stage cell division protein FtsN, and ZapE. These interactions may enable communication between oxidative metabolism and the cell division machinery in UPEC. Moreover, these interactions are conserved in an E. coli K-12 strain. This work suggests that there is coordination among the two fundamental and essential pathways that regulate overall growth, quiescence, and antibiotic susceptibility. IMPORTANCE: Uropathogenic Escherichia coli (UPEC) are the leading cause of urinary tract infections (UTIs). Upon invasion into bladder epithelial cells, UPEC establish quiescent intracellular reservoirs that may lead to antibiotic tolerance and recurrent UTIs. Here, we demonstrate using an in vitro system that quiescent UPEC cells are tolerant to ampicillin and have decreased metabolism characterized by succinyl-CoA limitation. We identify the global regulator integration host factor complex and the cell division protein ZapE as critical modifiers of quiescence and antibiotic tolerance. Finally, we show that ZapE interacts with components of both the cell division machinery and the tricarboxylic acid cycle, and this interaction is conserved in non-pathogenic E. coli, establishing a novel link between cell division and metabolism.


Subject(s)
Anti-Bacterial Agents , Citric Acid Cycle , Escherichia coli Proteins , Gene Expression Regulation, Bacterial , Uropathogenic Escherichia coli , Uropathogenic Escherichia coli/metabolism , Uropathogenic Escherichia coli/genetics , Uropathogenic Escherichia coli/drug effects , Uropathogenic Escherichia coli/growth & development , Anti-Bacterial Agents/pharmacology , Escherichia coli Proteins/metabolism , Escherichia coli Proteins/genetics , Citric Acid Cycle/drug effects , Bacterial Proteins/metabolism , Bacterial Proteins/genetics , Drug Resistance, Bacterial , Escherichia coli Infections/microbiology
12.
Sci Rep ; 14(1): 11848, 2024 05 24.
Article in English | MEDLINE | ID: mdl-38782931

ABSTRACT

Despite extensive characterisation of uropathogenic Escherichia coli (UPEC) causing urinary tract infections (UTIs), the genetic background of non-urinary extraintestinal pathogenic E. coli (ExPEC) in companion animals remains inadequately understood. In this study, we characterised virulence traits of 104 E. coli isolated from canine pyometra (n = 61) and prostatic abscesses (PAs) (n = 38), and bloodstream infections (BSIs) in dogs (n = 2), and cats (n = 3). A stronger association with UPEC of pyometra strains in comparison to PA strains was revealed. Notably, 44 isolates exhibited resistance to third-generation cephalosporins and/or fluoroquinolones, 15 were extended-spectrum ß-lactamase-producers. Twelve multidrug-resistant (MDR) strains, isolated from pyometra (n = 4), PAs (n = 5), and BSIs (n = 3), along with 7 previously characterised UPEC strains from dogs and cats, were sequenced. Genomic characteristics revealed that MDR E. coli associated with UTIs, pyometra, and BSIs belonged to international high-risk E. coli clones, including sequence type (ST) 38, ST131, ST617, ST648, and ST1193. However, PA strains belonged to distinct lineages, including ST12, ST44, ST457, ST744, and ST13037. The coreSNPs, cgMLST, and pan-genome illustrated intra-clonal variations within the same ST from different sources. The high-risk ST131 and ST1193 (phylogroup B2) contained high numbers of ExPEC virulence genes on pathogenicity islands, predominating in pyometra and UTI. Hybrid MDR/virulence IncF multi-replicon plasmids, containing aerobactin genes, were commonly found in non-B2 phylogroups from all sources. These findings offer genomic insights into non-urinary ExPEC, highlighting its potential for invasive infections in pets beyond UTIs, particularly with regards to high-risk global clones.


Subject(s)
Abscess , Dog Diseases , Drug Resistance, Multiple, Bacterial , Escherichia coli Infections , Pyometra , Urinary Tract Infections , Dogs , Animals , Urinary Tract Infections/microbiology , Urinary Tract Infections/veterinary , Drug Resistance, Multiple, Bacterial/genetics , Male , Dog Diseases/microbiology , Cats , Escherichia coli Infections/microbiology , Escherichia coli Infections/veterinary , Pyometra/microbiology , Pyometra/veterinary , Pyometra/genetics , Abscess/microbiology , Abscess/veterinary , Female , Cat Diseases/microbiology , Uropathogenic Escherichia coli/genetics , Uropathogenic Escherichia coli/drug effects , Uropathogenic Escherichia coli/pathogenicity , Escherichia coli/genetics , Escherichia coli/pathogenicity , Escherichia coli/drug effects , Anti-Bacterial Agents/pharmacology , Prostatic Diseases/microbiology , Prostatic Diseases/veterinary , Prostatic Diseases/genetics , Virulence/genetics , Virulence Factors/genetics
13.
BMC Microbiol ; 24(1): 190, 2024 May 30.
Article in English | MEDLINE | ID: mdl-38816687

ABSTRACT

BACKGROUND: Urinary tract infections (UTIs) are common bacterial infections, primarily caused by uropathogenic Escherichia coli (UPEC), leading to significant health issues and economic burden. Although antibiotics have been effective in treating UPEC infections, the rise of antibiotic-resistant strains hinders their efficacy. Hence, identifying novel bacterial targets for new antimicrobial approaches is crucial. Bacterial factors required for maintaining the full virulence of UPEC are the potential target. MepM, an endopeptidase in E. coli, is involved in the biogenesis of peptidoglycan, a major structure of bacterial envelope. Given that the bacterial envelope confronts the hostile host environment during infections, MepM's function could be crucial for UPEC's virulence. This study aims to explore the role of MepM in UPEC pathogenesis. RESULTS: MepM deficiency significantly impacted UPEC's survival in urine and within macrophages. Moreover, the deficiency hindered the bacillary-to-filamentous shape switch which is known for aiding UPEC in evading phagocytosis during infections. Additionally, UPEC motility was downregulated due to MepM deficiency. As a result, the mepM mutant displayed notably reduced fitness in causing UTIs in the mouse model compared to wild-type UPEC. CONCLUSIONS: This study provides the first evidence of the vital role of peptidoglycan endopeptidase MepM in UPEC's full virulence for causing UTIs. MepM's contribution to UPEC pathogenesis may stem from its critical role in maintaining the ability to resist urine- and immune cell-mediated killing, facilitating the morphological switch, and sustaining motility. Thus, MepM is a promising candidate target for novel antimicrobial strategies.


Subject(s)
Escherichia coli Infections , Urinary Tract Infections , Uropathogenic Escherichia coli , Urinary Tract Infections/microbiology , Uropathogenic Escherichia coli/genetics , Uropathogenic Escherichia coli/pathogenicity , Uropathogenic Escherichia coli/enzymology , Uropathogenic Escherichia coli/drug effects , Animals , Mice , Escherichia coli Infections/microbiology , Virulence , Endopeptidases/genetics , Endopeptidases/metabolism , Escherichia coli Proteins/genetics , Escherichia coli Proteins/metabolism , Female , Peptidoglycan/metabolism , Macrophages/microbiology , Macrophages/immunology , Humans , Disease Models, Animal
14.
Infect Genet Evol ; 121: 105600, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38692501

ABSTRACT

Urinary tract infections (UTI) caused by uropathogenic Escherichia coli (UPEC) pose a global health concern. Resistance mechanisms, including genetic mutations in antimicrobial target genes, efflux pumps, and drug deactivating enzymes, hinder clinical treatment. These resistance factors often spread through mobile genetic elements. Molecular techniques like whole genome sequencing (WGS), multilocus sequence typing (MLST), and phylotyping help decode bacterial genomes and categorise resistance genes. In this study, we analysed 57 UPEC isolates from different UTI patients following EUCAST guidelines. A selection of 17 representative strains underwent WGS, phylotyping, MLST, and comparative analysis to connect laboratory susceptibility data with predictive genomics based on key resistance genes and chromosomal mutations in antimicrobial targets. Trimethoprim resistance consistently correlated with dfr genes, with six different alleles detected among the isolates. These dfr genes often coexisted with class 1 integrons, with the most common gene cassette combining dfr and aadA. Furthermore, 52.9% of isolates harboured the blaTem-1 gene, rendering resistance to ampicillin and amoxicillin. Ciprofloxacin-resistant strains exhibited mutations in GyrA, GyrB and ParC, plasmid-mediated quinolone resistance genes (qnrb10), and aac(6')-Ib-cr5. Nitrofurantoin resistance in one isolate stemmed from a four amino acid deletion in NfsB. These findings illustrate the varied strategies employed by UPEC to resist antibiotics and the correlation between clinical susceptibility testing and molecular determinants. As molecular testing gains prominence in clinical applications, understanding key resistance determinants becomes crucial for accurate susceptibility testing and guiding effective antimicrobial therapy.


Subject(s)
Anti-Bacterial Agents , Escherichia coli Infections , Microbial Sensitivity Tests , Urinary Tract Infections , Uropathogenic Escherichia coli , Whole Genome Sequencing , Uropathogenic Escherichia coli/genetics , Uropathogenic Escherichia coli/drug effects , Humans , Whole Genome Sequencing/methods , Escherichia coli Infections/microbiology , Anti-Bacterial Agents/pharmacology , Urinary Tract Infections/microbiology , Ireland , Genome, Bacterial , Drug Resistance, Bacterial/genetics , Phylogeny , Phenotype , Multilocus Sequence Typing , Female , Male
15.
Infect Immun ; 92(6): e0017324, 2024 Jun 11.
Article in English | MEDLINE | ID: mdl-38780216

ABSTRACT

Urinary tract infection (UTI) is one of the most common bacterial infections worldwide. The main causative agent of UTI is uropathogenic Escherichia coli (UPEC). There is an immediate need for novel prophylactic and treatment strategies against UTI because of the increasing incidence of antimicrobial resistance among uropathogens. ABU 83972, an asymptomatic bacteriuria-causing E. coli strain, prevents UTI by suppressing the colonization of UPEC. However, the nature of competition and growth repression of UPEC by ABU 83972 is unclear and is the subject of our investigation. Here, we characterized the growth kinetics of ABU 83972 and uropathogens in human urine and laboratory media. Next, we performed a series of competitive co-culture experiments where ABU 83972 and uropathogens were inoculated at a 1:1 ratio in human urine and in various media, and their relative abundance was determined. In human urine, ABU 83972 outcompeted UPEC and additional uropathogens, reaching up to 90% of the total population after 24 hours of incubation. In contrast, UPEC outcompeted ABU 83972 in LB and M9 minimal media and exhibited superior colonization than ABU 83972 in the mouse urinary bladder. Since engineered living materials (ELMs) can be used to retain an organism of interest in a particular location, we developed ABU 83972-containing ELMs that effectively outcompeted UPEC in human urine. In summary, our work establishes that ABU 83972 outcompetes UPEC in a milieu- and cell-density-dependent manner, highlighting the importance of the metabolites and nutrients found in the human urine as determinants of the competitive fitness of ABU 83972.


Subject(s)
Bacteriuria , Escherichia coli Infections , Urinary Tract Infections , Uropathogenic Escherichia coli , Humans , Bacteriuria/microbiology , Animals , Uropathogenic Escherichia coli/genetics , Uropathogenic Escherichia coli/drug effects , Escherichia coli Infections/microbiology , Escherichia coli Infections/urine , Urinary Tract Infections/microbiology , Mice , Female , Urine/microbiology , Escherichia coli/genetics , Escherichia coli/drug effects
16.
Sci Rep ; 14(1): 10196, 2024 05 03.
Article in English | MEDLINE | ID: mdl-38702355

ABSTRACT

Urinary tract infections (UTIs) are the most common bacterial infections and uropathogenic Escherichia coli (UPEC) is the main etiological agent of UTIs. UPEC can persist in bladder cells protected by immunological defenses and antibiotics and intracellular behavior leads to difficulty in eradicating the infection. The aim of this paper is to design, prepare and characterize surfactant-based nanocarriers (niosomes) able to entrap antimicrobial drug and potentially to delivery and release antibiotics into UPEC-infected cells. In order to validate the proposed drug delivery system, gentamicin, was chosen as "active model drug" due to its poor cellular penetration. The niosomes physical-chemical characterization was performed combining different techniques: Dynamic Light Scattering Fluorescence Spectroscopy, Transmission Electron Microscopy. Empty and loaded niosomes were characterized in terms of size, ζ-potential, bilayer features and stability. Moreover, Gentamicin entrapped amount was evaluated, and the release study was also carried out. In addition, the effect of empty and loaded niosomes was studied on the invasion ability of UPEC strains in T24 bladder cell monolayers by Gentamicin Protection Assay and Confocal Microscopy. The observed decrease in UPEC invasion rate leads us to hypothesize a release of antibiotic from niosomes inside the cells. The optimization of the proposed drug delivery system could represent a promising strategy to significatively enhance the internalization of antimicrobial drugs.


Subject(s)
Anti-Bacterial Agents , Gentamicins , Liposomes , Uropathogenic Escherichia coli , Gentamicins/pharmacology , Uropathogenic Escherichia coli/drug effects , Humans , Anti-Bacterial Agents/pharmacology , Drug Carriers/chemistry , Urinary Tract Infections/microbiology , Urinary Tract Infections/drug therapy , Escherichia coli Infections/microbiology , Escherichia coli Infections/drug therapy , Drug Delivery Systems , Microbial Sensitivity Tests
17.
Microbiologyopen ; 13(3): e1411, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38706434

ABSTRACT

Traditional bacteriocin screening methods often face limitations due to diffusion-related challenges in agar matrices, which can prevent the peptides from reaching their target organism. Turbidimetric techniques offer a solution to these issues, eliminating diffusion-related problems and providing an initial quantification of bacteriocin efficacy in producer organisms. This study involved screening the cell-free supernatant (CFS) from eight uncharacterized asymptomatic bacteriuria (ABU) isolates and Escherichia coli 83972 for antimicrobial activity against clinical uropathogenic E. coli (UPEC) strains using turbidimetric growth methods. ABU isolates exhibiting activity against five or more UPEC strains were further characterized (PUTS 37, PUTS 58, PUTS 59, S-07-4, and SK-106-1). The inhibition of the CFS by proteinase K suggested that the antimicrobial activity was proteinaceous in nature, potentially bacteriocins. The activity of E. coli PUTS 58 and SK-106-1 was enhanced in an artificial urine medium, with both inhibiting all eight UPECs. A putative microcin H47 operon was identified in E. coli SK-106-1, along with a previously identified microcin V and colicin E7 in E. coli PUTS 37 and PUTS 58, respectively. These findings indicate that ABU bacteriocin-producers could serve as viable prophylactics and therapeutics in the face of increasing antibiotic resistance among uropathogens.


Subject(s)
Bacteriuria , Escherichia coli Infections , Uropathogenic Escherichia coli , Uropathogenic Escherichia coli/drug effects , Uropathogenic Escherichia coli/genetics , Bacteriuria/microbiology , Humans , Escherichia coli Infections/microbiology , Escherichia coli Infections/drug therapy , Bacteriocins/pharmacology , Bacteriocins/genetics , Nephelometry and Turbidimetry , Biological Assay/methods , Anti-Bacterial Agents/pharmacology , Microbial Sensitivity Tests , Urinary Tract Infections/microbiology
18.
J Agric Food Chem ; 72(18): 10328-10338, 2024 May 08.
Article in English | MEDLINE | ID: mdl-38651941

ABSTRACT

This work seeks to generate new knowledge about the mechanisms underlying the protective effects of cranberry against urinary tract infections (UTI). Using Caco-2 cells grown in Transwell inserts as an intestinal barrier model, we found that a cranberry-derived digestive fluid (containing 135 ± 5 mg of phenolic compounds/L) increased transepithelial electrical resistance with respect to control (ΔTEER = 54.5 Ω cm2) and decreased FITC-dextran paracellular transport by about 30%, which was related to the upregulation of the gene expression of tight junction (TJ) proteins (i.e., occludin, zonula occludens-1 [ZO-1], and claudin-2) (∼3-4-fold change with respect to control for claudin-2 and ∼2-3-fold for occludin and ZO-1). Similar protective effects, albeit to a lesser extent, were observed when Caco-2 cells were previously infected with uropathogenic Escherichia coli (UPEC). In a urinary barrier model comprising T24 cells grown in Transwell inserts and either noninfected or UPEC-infected, treatments with the cranberry-derived phenolic metabolites 3,4-dihydroxyphenylacetic acid (DOPAC) and phenylacetic acid (PAA) (250 µM) also promoted favorable changes in barrier integrity and permeability. In this line, incubation of noninfected T24 cells with these metabolites induced positive regulatory effects on claudin-2 and ZO-1 expression (∼3.5- and ∼2-fold change with respect to control for DOPAC and ∼1.5- and >2-fold change with respect to control for PAA, respectively). Overall, these results suggest that the protective action of cranberry polyphenols against UTI might involve molecular mechanisms related to the integrity and functionality of the urothelium and intestinal epithelium.


Subject(s)
Plant Extracts , Polyphenols , Urinary Tract Infections , Vaccinium macrocarpon , Vaccinium macrocarpon/chemistry , Humans , Urinary Tract Infections/prevention & control , Urinary Tract Infections/microbiology , Polyphenols/pharmacology , Polyphenols/chemistry , Polyphenols/metabolism , Caco-2 Cells , Plant Extracts/pharmacology , Plant Extracts/chemistry , Zonula Occludens-1 Protein/metabolism , Zonula Occludens-1 Protein/genetics , Uropathogenic Escherichia coli/drug effects , Uropathogenic Escherichia coli/genetics , Occludin/genetics , Occludin/metabolism , Intestinal Mucosa/metabolism , Intestinal Mucosa/drug effects , Tight Junctions/metabolism , Tight Junctions/drug effects , Fruit/chemistry , Intestines/drug effects , Escherichia coli Infections/prevention & control , Escherichia coli Infections/microbiology
19.
Infect Immun ; 92(5): e0008024, 2024 May 07.
Article in English | MEDLINE | ID: mdl-38534100

ABSTRACT

Traditional folk treatments for the prevention and management of urinary tract infections (UTIs) and other infectious diseases often include plants and plant extracts that are rich in phenolic compounds. These have been ascribed a variety of activities, including inhibition of bacterial interactions with host cells. Here, we tested a panel of four well-studied phenolic compounds-caffeic acid phenethyl ester (CAPE), resveratrol, catechin, and epigallocatechin gallate-for the effects on host cell adherence and invasion by uropathogenic Escherichia coli (UPEC). These bacteria, which are the leading cause of UTIs, can bind and subsequently invade bladder epithelial cells via an actin-dependent process. Intracellular UPEC reservoirs within the bladder are often protected from antibiotics and host defenses and likely contribute to the development of chronic and recurrent infections. In cell culture-based assays, only resveratrol had a notable negative effect on UPEC adherence to bladder cells. However, both CAPE and resveratrol significantly inhibited UPEC entry into the host cells, coordinate with attenuated phosphorylation of the host actin regulator Focal Adhesion Kinase (FAK or PTK2) and marked increases in the numbers of focal adhesion structures. We further show that the intravesical delivery of resveratrol inhibits UPEC infiltration of the bladder mucosa in a murine UTI model and that resveratrol and CAPE can disrupt the ability of other invasive pathogens to enter host cells. Together, these results highlight the therapeutic potential of molecules like CAPE and resveratrol, which could be used to augment antibiotic treatments by restricting pathogen access to protective intracellular niches.IMPORTANCEUrinary tract infections (UTIs) are exceptionally common and increasingly difficult to treat due to the ongoing rise and spread of antibiotic-resistant pathogens. Furthermore, the primary cause of UTIs, uropathogenic Escherichia coli (UPEC), can avoid antibiotic exposure and many host defenses by invading the epithelial cells that line the bladder surface. Here, we identified two plant-derived phenolic compounds that disrupt activation of the host machinery needed for UPEC entry into bladder cells. One of these compounds, resveratrol, effectively inhibited UPEC invasion of the bladder mucosa in a mouse UTI model, and both phenolic compounds significantly reduced host cell entry by other invasive pathogens. These findings suggest that select phenolic compounds could be used to supplement existing antibacterial therapeutics by denying uropathogens shelter within host cells and tissues and help explain some of the benefits attributed to traditional plant-based medicines.


Subject(s)
Escherichia coli Infections , Focal Adhesion Kinase 1 , Phenols , Plant Extracts , Urinary Tract Infections , Uropathogenic Escherichia coli , Animals , Female , Humans , Mice , Bacterial Adhesion/drug effects , Caffeic Acids/pharmacology , Catechin/pharmacology , Catechin/analogs & derivatives , Cell Line , Epithelial Cells/microbiology , Epithelial Cells/drug effects , Escherichia coli Infections/drug therapy , Escherichia coli Infections/microbiology , Focal Adhesion Kinase 1/metabolism , Focal Adhesion Kinase 1/antagonists & inhibitors , Phenols/pharmacology , Phenylethyl Alcohol/analogs & derivatives , Plant Extracts/pharmacology , Resveratrol/pharmacology , Urinary Bladder/microbiology , Urinary Bladder/drug effects , Urinary Bladder/pathology , Urinary Tract Infections/microbiology , Urinary Tract Infections/drug therapy , Uropathogenic Escherichia coli/drug effects
20.
J Antibiot (Tokyo) ; 77(5): 324-330, 2024 May.
Article in English | MEDLINE | ID: mdl-38438498

ABSTRACT

The multidrug-resistant clone identified as Escherichia coli sequence type 131 (E. coli ST131) has spread world-wide. This study sought to ascertain the frequency and biofilm formation of E. coli ST131 isolated from children with various malignancies. A total of 60 uropathogenic E. coli (UPEC) isolates from children without cancer and 30 UPEC isolates from children with cancer were assessed in this study. The microdilution method was used to investigate the sensitivity of bacteria to antibiotics. The microtiter plate (MTP) approach was used to phenotypically assess biofilm formation. The lasR, pelA, and lecA biofilm-encoding genes were detected by PCR in biofilm-producing isolates of E. coli. Thirty-seven out of 90 E. coli isolates were found to be ST131 (41.1%), with 17 (56.7%) from cancer-affected children and 20 (33.3%) from children without cancer, respectively (P-value = 0.036). The frequency of antimicrobial resistance was higher in ST131 strains were compared to non-ST131 strains and when they were isolated from healthy children vs. those who had cancer. In contrast to non-ST131 isolates, ST131 isolates were more biofilm-producers. There was a significant difference between the percentage of biofilm producers between the 22 (100%) ST131-O16 isolates and the 13 (86.7%) ST131-O25b isolates (P-value = 0.04). Children with cancer are more likely than children without cancer to develop biofilm forming E. coli ST131, the latter having a higher profile of antibiotic resistance. Interestingly, E. coli ST131 isolates from non-cancer patients had higher levels of overall antibiotic resistance and while more E. coli ST131isolates from cancer patients formed biofilms.


Subject(s)
Anti-Bacterial Agents , Biofilms , Escherichia coli Infections , Microbial Sensitivity Tests , Neoplasms , Uropathogenic Escherichia coli , Biofilms/drug effects , Humans , Anti-Bacterial Agents/pharmacology , Neoplasms/microbiology , Child , Uropathogenic Escherichia coli/drug effects , Uropathogenic Escherichia coli/genetics , Uropathogenic Escherichia coli/isolation & purification , Escherichia coli Infections/microbiology , Escherichia coli Infections/drug therapy , Female , Drug Resistance, Multiple, Bacterial/genetics , Child, Preschool , Male , Urinary Tract Infections/microbiology , Infant
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