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1.
Mol Biol Rep ; 51(1): 767, 2024 Jun 15.
Article in English | MEDLINE | ID: mdl-38878205

ABSTRACT

BACKGROUND: Esterases (EC 3.1.1.X) are enzymes that catalyze the hydrolysis ester bonds. These enzymes have large potential for diverse applications in fine industries, particularly in pharmaceuticals, cosmetics, and bioethanol production. METHODS AND RESULTS: In this study, a gene encoding an esterase from Thermobifida fusca YX (TfEst) was successfully cloned, and its product was overexpressed in Escherichia coli and purified using affinity chromatography. The TfEst kinetic assay revealed catalytic efficiencies of 0.58 s-1 mM-1, 1.09 s-1 mM-1, and 0.062 s-1 mM-1 against p-Nitrophenyl acetate, p-Nitrophenyl butyrate, and 1-naphthyl acetate substrates, respectively. Furthermore, TfEst also exhibited activity in a pH range from 6.0 to 10.0, with maximum activity at pH 8.0. The enzyme demonstrated a half-life of 20 min at 70 °C. Notably, TfEst displayed acetyl xylan esterase activity as evidenced by the acetylated xylan assay. The structural prediction of TfEst using AlphaFold indicated that has an α/ß-hydrolase fold, which is consistent with other esterases. CONCLUSIONS: The enzyme stability over a broad pH range and its activity at elevated temperatures make it an appealing candidate for industrial processes. Overall, TfEst emerges as a promising enzymatic tool with significant implications for the advancement of biotechnology and biofuels industries.


Subject(s)
Acetylesterase , Esterases , Thermobifida , Acetylesterase/metabolism , Acetylesterase/genetics , Acetylesterase/chemistry , Hydrogen-Ion Concentration , Kinetics , Substrate Specificity , Thermobifida/enzymology , Thermobifida/genetics , Esterases/metabolism , Esterases/genetics , Esterases/chemistry , Enzyme Stability , Temperature , Escherichia coli/genetics , Escherichia coli/metabolism , Cloning, Molecular/methods , Hydrolysis , Xylans/metabolism , Butyrates/metabolism , Bacterial Proteins/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/chemistry , Nitrophenols
2.
Bioresour Technol ; 405: 130932, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38838831

ABSTRACT

The first comparative pre-treatment study of Miscanthus (Mxg) and sugarcane bagasse (SCB) using steam explosion (SE) and pressurised disc refining (PDR) pretreatment to optimise xylose and xylo-oligosaccharide release is described. The current investigation aimed to 1) Develop optimised batch-wise steam explosion parameters for Mxg and SCB, 2) Scale from static batch steam explosion to dynamic continuous pressurised disc refining, 3) Identify, understand, and circumvent scale-up production hurdles. Optimised SE parameters released 82% (Mxg) and 100% (SCB) of the available xylan. Scaling to PDR, Miscanthus yielded 85% xylan, highlighting how robust scouting assessments for boundary process parameters can result in successful technical transfer. In contrast, SCB technical transfer was not straightforward, with significant differences observed between the two processes, 100% (SE) and 58% (PDR). This report underlines the importance of feedstock-specific pretreatment strategies to underpin process development, scale-up, and optimisation of carbohydrate release from biomass.


Subject(s)
Cellulose , Oligosaccharides , Poaceae , Saccharum , Steam , Xylose , Saccharum/chemistry , Cellulose/chemistry , Pilot Projects , Biotechnology/methods , Xylans , Glucuronates
3.
Arch Microbiol ; 206(7): 307, 2024 Jun 17.
Article in English | MEDLINE | ID: mdl-38884653

ABSTRACT

Xylanase is the most important hydrolase in the xylan hydrolase system, the main function of which is ß-1,4-endo-xylanase, which randomly cleaves xylans to xylo-oligosaccharides and xylose. Xylanase has wide ranging of applications, but there remains little research on the cold-adapted enzymes required in some low-temperature industries. Glycoside hydrolase family 8 (GH8) xylanases have been reported to have cold-adapted enzyme activity. In this study, the xylanase gene dgeoxyn was excavated from Deinococcus geothermalis through sequence alignment. The recombinant xylanase DgeoXyn encodes 403 amino acids with a theoretical molecular weight of 45.39 kDa. Structural analysis showed that DgeoXyn has a (α/α)6-barrel fold structure typical of GH8 xylanase. At the same time, it has strict substrate specificity, is only active against xylan, and its hydrolysis products include xylobiose, xylotrinose, xytetranose, xylenanose, and a small amount of xylose. DgeoXyn is most active at 70 â„ƒ and pH 6.0. It is very stable at 10, 20, and 30 â„ƒ, retaining more than 80% of its maximum enzyme activity. The enzyme activity of DgeoXyn increased by 10% after the addition of Mn2+ and decreased by 80% after the addition of Cu2+. The Km and Vmax of dgeox were 42 mg/ml and 20,000 U/mg, respectively, at a temperature of 70 â„ƒ and pH of 6.0 using 10 mg/ml beechwood xylan as the substrate. This research on DgeoXyn will provide a theoretical basis for the development and application of low-temperature xylanase.


Subject(s)
Deinococcus , Endo-1,4-beta Xylanases , Enzyme Stability , Xylans , Deinococcus/enzymology , Deinococcus/genetics , Substrate Specificity , Endo-1,4-beta Xylanases/genetics , Endo-1,4-beta Xylanases/chemistry , Endo-1,4-beta Xylanases/metabolism , Xylans/metabolism , Cold Temperature , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Bacterial Proteins/chemistry , Hydrogen-Ion Concentration , Glycoside Hydrolases/genetics , Glycoside Hydrolases/metabolism , Glycoside Hydrolases/chemistry , Amino Acid Sequence , Hydrolysis , Recombinant Proteins/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Sequence Alignment , Cloning, Molecular , Kinetics , Molecular Weight , Disaccharides
4.
Arch Microbiol ; 206(7): 327, 2024 Jun 26.
Article in English | MEDLINE | ID: mdl-38922442

ABSTRACT

Lignocellulose biomass raw materials have a high value in energy conversion. Recently, there has been growing interest in using microorganisms to secret a series of enzymes for converting low-cost biomass into high-value products such as biofuels. We previously isolated a strain of Penicillium oxalicun 5-18 with promising lignocellulose-degrading capability. However, the mechanisms of lignocellulosic degradation of this fungus on various substrates are still unclear. In this study, we performed transcriptome-wide profiling and comparative analysis of strain 5-18 cultivated in liquid media with glucose (Glu), xylan (Xyl) or wheat bran (WB) as sole carbon source. In comparison to Glu culture, the number of differentially expressed genes (DEGs) induced by WB and Xyl was 4134 and 1484, respectively, with 1176 and 868 genes upregulated. Identified DEGs were enriched in many of the same pathways in both comparison groups (WB vs. Glu and Xly vs. Glu). Specially, 118 and 82 CAZyme coding genes were highly upregulated in WB and Xyl cultures, respectively. Some specific pathways including (Hemi)cellulose metabolic processes were enriched in both comparison groups. The high upregulation of these genes also confirmed the ability of strain 5-18 to degrade lignocellulose. Co-expression and co-upregulated of genes encoding CE and AA CAZy families, as well as other (hemi)cellulase revealed a complex degradation strategy in this strain. Our findings provide new insights into critical genes, key pathways and enzyme arsenal involved in the biomass degradation of P. oxalicum 5-18.


Subject(s)
Gene Expression Profiling , Lignin , Penicillium , Transcriptome , Xylans , Penicillium/genetics , Penicillium/metabolism , Lignin/metabolism , Xylans/metabolism , Biomass , Glucose/metabolism , Dietary Fiber/metabolism , Gene Expression Regulation, Fungal , Fungal Proteins/genetics , Fungal Proteins/metabolism
5.
BMC Res Notes ; 17(1): 175, 2024 Jun 24.
Article in English | MEDLINE | ID: mdl-38915023

ABSTRACT

OBJECTIVE: New characterized carbohydrate-active enzymes are needed for use as tools to discriminate complex carbohydrate structural features. Fungal glycoside hydrolase family 3 (GH3) ß-xylosidases have been shown to be useful for the structural elucidation of glucuronic acid (GlcA) and arabinofuranose (Araf) substituted oligoxylosides. A homolog of these GH3 fungal enzymes from the bacterium Segatella baroniae (basonym Prevotella bryantii), Xyl3C, has been previously characterized, but those studies did not address important functional specificity features. In an interest to utilize this enzyme for laboratory methods intended to discriminate the structure of the non-reducing terminus of substituted xylooligosaccharides, we have further characterized this GH3 xylosidase. RESULTS: In addition to verification of basic functional characteristics of this xylosidase we have determined its mode of action as it relates to non-reducing end xylose release from GlcA and Araf substituted oligoxylosides. Xyl3C cleaves xylose from the non-reducing terminus of ß-1,4-xylan until occurrence of a penultimate substituted xylose. If this substitution is O2 linked, then Xyl3C removes the non-reducing xylose to leave the substituted xylose as the new non-reducing terminus. However, if the substitution is O3 linked, Xyl3C does not hydrolyze, thus leaving the substitution one-xylose (penultimate) from the non-reducing terminus. Hence, Xyl3C enables discrimination between O2 and O3 linked substitutions on the xylose penultimate to the non-reducing end. These findings are contrasted using a homologous enzyme also from S. baroniae, Xyl3B, which is found to yield a penultimate substituted nonreducing terminus regardless of which GlcA or Araf substitution exists.


Subject(s)
Xylans , Xylose , Xylosidases , Xylosidases/metabolism , Xylosidases/genetics , Xylosidases/chemistry , Xylans/metabolism , Xylose/metabolism , Substrate Specificity , Prevotella/enzymology , Prevotella/genetics , Oligosaccharides/metabolism , Oligosaccharides/chemistry , Glucuronates/metabolism , Arabinose/analogs & derivatives
6.
Carbohydr Polym ; 340: 122295, 2024 Sep 15.
Article in English | MEDLINE | ID: mdl-38858006

ABSTRACT

GH30 xylobiohydrolases, an expanding enzyme category, need deeper insights for optimal use. The primary aim of this study was to characterize a new xylobiohydrolase, AcGH30A of GH30 family from Acetivibrio clariflavus. The gene encoding AcGH30A was cloned using pET28a(+) vector and expressed in E. coli BL21(DE3) cells. AcGH30A was purified by immobilized metal-ion affinity chromatography. SDS-PAGE analysis of AcGH30A showed molecular mass of ~58 kDa. AcGH30A showed optimum temperature 80 °C and optimum pH 7.0. AcGH30A was stable (maintaining >80 % of control activity) in pH range, 4-7 and temperature range, 30 °C -70 °C when incubated for 90 min. AcGH30A displayed melting temperature, 72 °C and half-life, 21 days at 4 °C. The enzyme activity of AcGH30A was enhanced by 10 mM Ca2+ and Mg2+ ions by 25 % and 21 %, respectively, whereas 10 mM Co2+, Zn2+, Fe2+, and Cu2+ ions significantly reduced it. AcGH30A showed activity against various xylan polysaccharides displaying highest Vmax, 139 U.mg-1 and KM, 0.71 mg.ml-1 against 4-O-methyl glucuronoxylan under optimum conditions. TLC, HPLC and LC-MS analyses of AcGH30A hydrolyzed products from xylan substrates revealed the release of sole product, xylobiose, confirming it as an obligate xylobiohydrolase. AcGH30A being a highly thermostable enzyme can be potentially utlilized in various biotechnological applications.


Subject(s)
Enzyme Stability , Recombinant Proteins , Xylans , Xylans/chemistry , Xylans/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Hydrogen-Ion Concentration , Temperature , Substrate Specificity , Hydrolysis , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Bacterial Proteins/isolation & purification , Cloning, Molecular , Escherichia coli/genetics
7.
Theor Appl Genet ; 137(7): 166, 2024 Jun 22.
Article in English | MEDLINE | ID: mdl-38907845

ABSTRACT

KEY MESSAGE: A novel QTL, TaqW-6B of water-extractable arabinoxylan content in the wheat grain on chromosome 6BL was identified and fine mapped in a narrow region 3.8 Mb. Water-extractable arabinoxylan (WE-AX), an important component of hemicellulose, is associated with various abundant health benefits. In this study, QTLs for WE-AX content were detected in two populations: (1) a recombinant inbred line (RIL) population with 164 lines derived from a cross between Avocet and Chilero (AC population) genotyped with diversity array technology (DArT), and (2) a natural population of 243 varieties (CH population) genotyped with the Axiom wheat 660 K single-nucleotide polymorphism (SNP) array. A stable QTL Qwe-ax.haust-6B, explaining 8.51-15.59% of the phenotypic variance, was mapped in the physical interval 459.38-572.09 Mb on the long arm of chromosome 6B in the AC population, tightly linked with DArT markers 3,944,740 and 4,991,038 under three experimental conditions. The Qwe-ax.haust-6B was further narrowed down to be delimited in the physical interval 516.47-571.58 Mb on chromosome 6BL, explaining 5.86-16.27% of the phenotypic variance in the CH population. Furthermore, we developed high-throughput kompetitive allele-specific PCR (KASP) markers to reconstruct the genetic linkage map in the AC population, and Qwe-ax.haust-6B was fine mapped into a narrow region named TaqW-6B, which was compressed between KASP-6B-3 and KASP-6B-6 at a physical distance of 3.8 Mb. In the meanwhile, the markers were also validated in a natural population of 160 wheat lines (NP population). Consequently, this study is of great importance to provide the theoretical basis for cloning the key gene and developing functional markers for molecular breeding.


Subject(s)
Chromosome Mapping , Phenotype , Polymorphism, Single Nucleotide , Quantitative Trait Loci , Triticum , Xylans , Triticum/genetics , Genotype , Genetic Markers , Genetic Linkage , Chromosomes, Plant/genetics , Genome-Wide Association Study , Genetic Association Studies , Edible Grain/genetics , Edible Grain/chemistry
8.
Gut Microbes ; 16(1): 2363021, 2024.
Article in English | MEDLINE | ID: mdl-38860973

ABSTRACT

Dietary fiber supplements are a strategy to close the 'fiber gap' and induce targeted modulations of the gut microbiota. However, higher doses of fiber supplements cause gastrointestinal (GI) symptoms that differ among individuals. What determines these inter-individual differences is insufficiently understood. Here we analyzed findings from a six-week randomized controlled trial that evaluated GI symptoms to corn bran arabinoxylan (AX; n = 15) relative to non-fermentable microcrystalline cellulose (MCC; n = 16) at efficacious supplement doses of 25 g/day (females) or 35 g/day (males) in adults with excess weight. Self-reported flatulence, bloating, and stomach aches were evaluated weekly. Bacterial taxa involved in AX fermentation were identified by bioorthogonal non-canonical amino acid tagging. Associations between GI symptoms, fecal microbiota features, and diet history were systematically investigated. AX supplementation increased symptoms during the first three weeks relative to MCC (p < 0.05, Mann-Whitney tests), but subjects 'adapted' with symptoms reverting to baseline levels toward the end of treatment. Symptom adaptations were individualized and correlated with the relative abundance of Bifidobacterium longum at baseline (rs = 0.74, p = 0.002), within the bacterial community that utilized AX (rs = 0.69, p = 0.006), and AX-induced shifts in acetate (rs = 0.54, p = 0.039). Lower baseline consumption of animal-based foods and higher whole grains associated with less severity and better adaptation. These findings suggest that humans do 'adapt' to tolerate efficacious fiber doses, and this process is linked to their microbiome and dietary factors known to interact with gut microbes, providing a basis for the development of strategies for improved tolerance of dietary fibers.


Subject(s)
Bifidobacterium longum , Dietary Fiber , Feces , Gastrointestinal Microbiome , Xylans , Xylans/metabolism , Humans , Feces/microbiology , Feces/chemistry , Male , Female , Dietary Fiber/metabolism , Middle Aged , Gastrointestinal Microbiome/drug effects , Bifidobacterium longum/metabolism , Adult , Dietary Supplements/analysis , Fermentation , Aged , Adaptation, Physiological
9.
Carbohydr Polym ; 339: 122248, 2024 Sep 01.
Article in English | MEDLINE | ID: mdl-38823916

ABSTRACT

Arabinoxylan is a major hemicellulose in the sugarcane plant cell wall with arabinose decorations that impose steric restrictions on the activity of xylanases against this substrate. Enzymatic removal of the decorations by arabinofuranosidases can allow a more efficient arabinoxylan degradation by xylanases. Here we produced and characterized a recombinant Bifidobacterium longum arabinofuranosidase from glycoside hydrolase family 43 (BlAbf43) and applied it, together with GH10 and GH11 xylanases, to produce xylooligosaccharides (XOS) from wheat arabinoxylan and alkali pretreated sugarcane bagasse. The enzyme synergistically enhanced XOS production by GH10 and GH11 xylanases, being particularly efficient in combination with the latter family of enzymes, with a degree of synergism of 1.7. We also demonstrated that the enzyme is capable of not only removing arabinose decorations from the arabinoxylan and from the non-reducing end of the oligomeric substrates, but also hydrolyzing the xylan backbone yielding mostly xylobiose and xylose in particular cases. Structural studies of BlAbf43 shed light on the molecular basis of the substrate recognition and allowed hypothesizing on the structural reasons of its multifunctionality.


Subject(s)
Bifidobacterium longum , Cellulose , Endo-1,4-beta Xylanases , Glucuronates , Glycoside Hydrolases , Oligosaccharides , Saccharum , Xylans , Oligosaccharides/chemistry , Oligosaccharides/metabolism , Glycoside Hydrolases/metabolism , Glycoside Hydrolases/chemistry , Glucuronates/metabolism , Glucuronates/chemistry , Endo-1,4-beta Xylanases/metabolism , Endo-1,4-beta Xylanases/chemistry , Xylans/metabolism , Xylans/chemistry , Saccharum/chemistry , Saccharum/metabolism , Cellulose/chemistry , Cellulose/metabolism , Bifidobacterium longum/enzymology , Bifidobacterium longum/metabolism , Hydrolysis , Substrate Specificity , Recombinant Proteins/metabolism , Recombinant Proteins/chemistry , Disaccharides
10.
Carbohydr Polym ; 339: 122243, 2024 Sep 01.
Article in English | MEDLINE | ID: mdl-38823912

ABSTRACT

Pilling is a form of textile mechanical damage, forming fibrous bobbles on the surface of garments, resulting in premature disposal of clothing by consumers. However, our understanding on how the structural properties of the cellulosic matrix compliment the three-dimensional shape of cotton pills remains limited. This knowledge gap has hindered the development of effective 'pillase' technologies over the past 20 years due to challenges in balancing depilling efficacy with fabric integrity preservation. Therefore, the main focus here was characterising the role of cellulose and the hemicellulose components in cotton textiles to elucidate subtle differences between the chemistry of pills and fibre regions involved in structural integrity. State-of-the-art bioimaging using carbohydrate binding modules, monoclonal antibodies, and Leica SP8 and a Nikon A1R confocal microscopes, revealed the biophysical structure of cotton pills for the first time. Identifying regions of increased crystalline cellulose in the base of anchor fibres and weaker amorphous cellulose at dislocations in their centres, enhancing our understanding of current enzyme specificity. Surprisingly, pills contained a 7-fold increase in the concentration of xyloglucan compared to the main textile. Therefore, xyloglucan offers a previously undescribed target for overcoming this benefit-to-risk paradigm, suggesting a role for xyloglucanase enzymes in future pillase systems.


Subject(s)
Cellulose , Cotton Fiber , Glucans , Xylans , Cellulose/chemistry , Cotton Fiber/analysis , Xylans/chemistry , Xylans/metabolism , Glucans/chemistry , Crystallization , Textiles , Polysaccharides/chemistry
11.
Carbohydr Polym ; 339: 122261, 2024 Sep 01.
Article in English | MEDLINE | ID: mdl-38823925

ABSTRACT

Understanding the distribution and accessibility of polymers within plant cell walls is crucial for addressing biomass recalcitrance in lignocellulosic materials. In this work, Imaging Fourier Transform Infrared (FTIR) and Raman spectroscopy, coupled with targeted chemical treatments, were employed to investigate cell wall polymer distribution in two bamboo species at both tissue and cell wall levels. Tissue-level Imaging FTIR revealed significant disparities in the distribution and chemical activity of cell wall polymers between the fibrous sheath and fibrous strand. At the cell wall level, Imaging Raman spectroscopy delineated a distinct difference between the secondary wall and intercellular layer, with the latter containing higher levels of lignin, hydroxycinnamic acid (HCA), and xylan, and lower cellulose. Mild acidified sodium chlorite treatment led to partial removal of lignin, HCA, and xylan from the intercellular layer, albeit to a lesser extent than alkaline treatment, indicating susceptibility of these polymers to chemical treatment. In contrast, lignin in the secondary wall exhibited limited reactivity to acidified sodium chlorite but was slightly removed by alkaline treatment, suggesting stable chemical properties with slight alkaline intolerance. These findings provide valuable insights into the inherent design mechanism of plant cells and their efficient utilization.


Subject(s)
Cell Wall , Cellulose , Coumaric Acids , Lignin , Cell Wall/chemistry , Lignin/chemistry , Coumaric Acids/chemistry , Cellulose/chemistry , Spectroscopy, Fourier Transform Infrared/methods , Xylans/chemistry , Spectrum Analysis, Raman/methods , Sasa/chemistry , Chlorides/chemistry , Polymers/chemistry
12.
Nature ; 630(8016): 381-386, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38811733

ABSTRACT

Lignocellulose is mainly composed of hydrophobic lignin and hydrophilic polysaccharide polymers, contributing to an indispensable carbon resource for green biorefineries1,2. When chemically treated, lignin is compromised owing to detrimental intra- and intermolecular crosslinking that hampers downstream process3,4. The current valorization paradigms aim to avoid the formation of new C-C bonds, referred to as condensation, by blocking or stabilizing the vulnerable moieties of lignin5-7. Although there have been efforts to enhance biomass utilization through the incorporation of phenolic additives8,9, exploiting lignin's proclivity towards condensation remains unproven for valorizing both lignin and carbohydrates to high-value products. Here we leverage the proclivity by directing the C-C bond formation in a catalytic arylation pathway using lignin-derived phenols with high nucleophilicity. The selectively condensed lignin, isolated in near-quantitative yields while preserving its prominent cleavable ß-ether units, can be unlocked in a tandem catalytic process involving aryl migration and transfer hydrogenation. Lignin in wood is thereby converted to benign bisphenols (34-48 wt%) that represent performance-advantaged replacements for their fossil-based counterparts. Delignified pulp from cellulose and xylose from xylan are co-produced for textile fibres and renewable chemicals. This condensation-driven strategy represents a key advancement complementary to other promising monophenol-oriented approaches targeting valuable platform chemicals and materials, thereby contributing to holistic biomass valorization.


Subject(s)
Benzhydryl Compounds , Biomass , Chemical Fractionation , Lignin , Phenols , Benzhydryl Compounds/chemistry , Benzhydryl Compounds/metabolism , Catalysis , Cellulose/chemistry , Cellulose/metabolism , Chemical Fractionation/methods , Hydrogenation , Lignin/chemistry , Lignin/metabolism , Phenols/chemistry , Phenols/metabolism , Wood/chemistry , Xylans/chemistry , Xylans/metabolism , Xylose/chemistry , Xylose/metabolism , Fossil Fuels , Textiles
13.
Int J Biol Macromol ; 271(Pt 1): 132571, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38782312

ABSTRACT

To obtain efficient natural food packaging materials, we utilized acorn starch (AS)-based film strengthened by feruloylated arabinoxylan (FAX) gel and additional retrogradation treatment to extend the shelf life of Agaricus bisporus (A. bisporus). Fourier transform infrared spectroscopy (FT-IR), confocal laser scanning microscopy (CLSM), and scanning electron microscopy (SEM) analyses showed that due to the strong hydrogen bonding between FAX and starch molecules, physical crosslinking occurred between FAX and starch molecules in the composite film, and the microstructure became more compact. Thermogravimetric, tensile strength and swelling degree analyses indicate that the composite film exhibits better thermal stability, mechanical properties, and waterproofing compared to the pure AS film. Consequently, after five days of storage, the moisture content of the A. bisporus packaged with our composite film was 7.53 times and 5.73 times higher than that of the control group and the commercially available PEF group, respectively. Moreover, it delayed the respiration or transpiration of A. bisporus (lower weight loss, relative conductivity, MDA content). This packaging film developed with the objective of eco-friendly and biodegradability has considerable application potential in food and other industries.


Subject(s)
Agaricus , Food Packaging , Starch , Xylans , Xylans/chemistry , Starch/chemistry , Agaricus/chemistry , Food Packaging/methods , Food Preservation/methods , Gels/chemistry , Tensile Strength , Ananas/chemistry , Spectroscopy, Fourier Transform Infrared
14.
Int J Biol Macromol ; 271(Pt 1): 132291, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38816296

ABSTRACT

Arabinoxylan (AX) is a potential natural food additive that can enhance the textural properties of food. However, the addition of ascorbic acid (AA) can easily lead to a decrease in the viscosity of AX, which poses a challenge in the development of AX-rich foods. Therefore, the purpose of this study is to elucidate the mechanisms behind the reduction in AX viscosity in the presence of AA. The results indicated that AA could reduce the apparent viscosity and molecular weight of AX without significantly affecting the monosaccharide composition, suggesting a potential mechanism related to the cleavage of AX glycosidic bonds. Interestingly, free radicals were present in the reaction system, and the generation of free radicals under different conditions was consistent with the reduction in apparent viscosity of AX. Furthermore, the reduction in AX apparent viscosity by AA was influenced by various factors including AA concentration, reaction time, temperature, pH, and metal ions. These findings suggested that the mechanism of AX degradation may be due to AA-induced free radical generation, leading to non-selective attacks on glycosidic bonds. Therefore, this study revealed that the potential mechanism behind the reduction in AX viscosity induced by AA involved the generation of ascorbic acid radicals.


Subject(s)
Ascorbic Acid , Molecular Weight , Xylans , Ascorbic Acid/chemistry , Xylans/chemistry , Viscosity , Free Radicals/chemistry , Hydrogen-Ion Concentration , Temperature , Monosaccharides/chemistry
15.
Int J Biol Macromol ; 272(Pt 2): 132722, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38821304

ABSTRACT

Several fungal species produce diverse carbohydrate-active enzymes useful for the xylooligosaccharide biorefinery. These enzymes can be isolated by different purification methods, but fungi usually produce other several compounds which interfere in the purification process. So, the present work has three interconnected aims: (i) compare ß-xylosidase production by Fusarium pernambucanum MUM 18.62 with other crop pathogens; (ii) optimise F. pernambucanum xylanolytic enzymes expression focusing on the pre-inoculum media composition; and (iii) design a downstream strategy to eliminate interfering substances and sequentially isolate ß-xylosidases, arabinofuranosidases and endo-xylanases from the extracellular media. F. pernambucanum showed the highest ß-xylosidase activity among all the evaluated species. It also produced endo-xylanase and arabinofuranosidase. The growth and ß-xylosidase expression were not influenced by the pre-inoculum source, contrary to endo-xylanase activity, which was higher with xylan-enriched agar. Using a sequential strategy involving ammonium sulfate precipitation of the extracellular interferences, and several chromatographic steps of the supernatant (hydrophobic chromatography, size exclusion chromatography, and anion exchange chromatography), we were able to isolate different enzyme pools: four partially purified ß-xylosidase/arabinofuranoside; FpXylEAB trifunctional GH10 endo-xylanase/ß-xylosidase/arabinofuranoside enzyme (39.8 kDa) and FpXynE GH11 endo-xylanase with molecular mass (18.0 kDa). FpXylEAB and FpXynE enzymes were highly active at pH 5-6 and 60-50 °C.


Subject(s)
Endo-1,4-beta Xylanases , Fusarium , Glycoside Hydrolases , Xylosidases , Fusarium/enzymology , Xylosidases/metabolism , Xylosidases/isolation & purification , Xylosidases/chemistry , Glycoside Hydrolases/metabolism , Glycoside Hydrolases/isolation & purification , Glycoside Hydrolases/chemistry , Endo-1,4-beta Xylanases/isolation & purification , Endo-1,4-beta Xylanases/metabolism , Endo-1,4-beta Xylanases/chemistry , Xylans/metabolism , Extracellular Space/enzymology
16.
BMC Genomics ; 25(1): 495, 2024 May 20.
Article in English | MEDLINE | ID: mdl-38769483

ABSTRACT

Bacteria of the genera Xylanibacter and Segatella are among the most dominant groups in the rumen microbiota. They are characterized by the ability to utilize different hemicelluloses and pectin of plant cell-wall as well as plant energy storage polysaccharides. The degradation is possible with the use of cell envelope bound multiprotein apparatuses coded in polysaccharide utilization loci (PULs), which have been shown to be substrate specific. The knowledge of PUL presence in rumen Xylanibacter and Segatella based on bioinformatic analyses is already established and transcriptomic and genetic approaches confirmed predicted PULs for a limited number of substrates. In this study, we transcriptomically identified additional different PULs in Xylanibacter ruminicola KHP1 and Segatella bryantii TF1-3. We also identified substrate preferences and found that specific growth rate and extent of growth impacted the choice of substrates preferentially used for degradation. These preferred substrates were used by both strains simultaneously as judged by their PUL upregulation. Lastly, ß-glucan and xyloglucan were used by these strains in the absence of bioinformatically and transcriptomically identifiable PUL systems.


Subject(s)
Gene Expression Profiling , Polysaccharides , Rumen , Xylans , Animals , Xylans/metabolism , Polysaccharides/metabolism , Rumen/microbiology , Rumen/metabolism , Glucans/metabolism , beta-Glucans/metabolism , Substrate Specificity , Bacteroidetes/genetics , Bacteroidetes/metabolism , Transcriptome
17.
Biomacromolecules ; 25(6): 3532-3541, 2024 Jun 10.
Article in English | MEDLINE | ID: mdl-38750618

ABSTRACT

Despite the potential of lignocellulose in manufacturing value-added chemicals and biofuels, its efficient biotechnological conversion by enzymatic hydrolysis still poses major challenges. The complex interplay between xylan, cellulose, and lignin in fibrous materials makes it difficult to assess underlying physico- and biochemical mechanisms. Here, we reduce the complexity of the system by creating matrices of cellulose, xylan, and lignin, which consists of a cellulose base layer and xylan/lignin domains. We follow enzymatic degradation using an endoxylanase by high-speed atomic force microscopy and surface plasmon resonance spectroscopy to obtain morphological and kinetic data. Fastest reaction kinetics were observed at low lignin contents, which were related to the different swelling capacities of xylan. We demonstrate that the complex processes taking place at the interfaces of lignin and xylan in the presence of enzymes can be monitored in real time, providing a future platform for observing phenomena relevant to fiber-based systems.


Subject(s)
Endo-1,4-beta Xylanases , Lignin , Wood , Xylans , Lignin/chemistry , Lignin/metabolism , Xylans/chemistry , Xylans/metabolism , Wood/chemistry , Wood/metabolism , Endo-1,4-beta Xylanases/metabolism , Endo-1,4-beta Xylanases/chemistry , Cellulose/chemistry , Cellulose/metabolism , Hydrolysis , Microscopy, Atomic Force , Kinetics
18.
Compr Rev Food Sci Food Saf ; 23(3): e13366, 2024 May.
Article in English | MEDLINE | ID: mdl-38775125

ABSTRACT

Wheat bran (WB) is a well-known and valuable source of dietary fiber. Arabinoxylan (AX) is the primary hemicellulose in WB and can be isolated and used as a functional component in various food products. Typically, AX is extracted from the whole WB using different processes after mechanical treatments. However, WB is composed of different layers, namely, the aleurone layer, pericarp, testa, and hyaline layer. The distribution, structure, and extractability of AX vary within these layers. Modern fractionation technologies, such as debranning and electrostatic separation, can separate the different layers of WB, making it possible to extract AX from each layer separately. Therefore, AX in WB shows potential for broader applications if it can be extracted from the different layers separately. In this review, the distribution and chemical structures of AX in WB layers are first discussed followed by extraction, physicochemical properties, and health benefits of isolated AX from WB. Additionally, the utilization of AX isolated from WB in foods, including cereal foods, packaging film, and the delivery of food ingredients, is reviewed. Future perspectives on challenges and opportunities in the research field of AX isolated from WB are highlighted.


Subject(s)
Dietary Fiber , Xylans , Xylans/chemistry , Dietary Fiber/analysis
19.
Arch Microbiol ; 206(6): 261, 2024 May 16.
Article in English | MEDLINE | ID: mdl-38753095

ABSTRACT

The search for affordable enzymes with exceptional characteristics is fundamental to overcoming industrial and environmental constraints. In this study, a recombinant GH10 xylanase (Xyn10-HB) from the extremely alkaliphilic bacterium Halalkalibacterium halodurans C-125 cultivated at pH 10 was cloned and expressed in E. coli BL21(DE3). Removal of the signal peptide improved the expression, and an overall activity of 8 U/mL was obtained in the cell-free supernatant. The molecular weight of purified Xyn10-HB was estimated to be 42.6 kDa by SDS-PAGE. The enzyme was active across a wide pH range (5-10) with optimal activity recorded at pH 8.5 and 60 °C. It also presented good stability with a half-life of 3 h under these conditions. Substrate specificity studies showed that Xyn10-HB is a cellulase-free enzyme that conventionally hydrolyse birchwood and oat spelts xylans (Apparent Km of 0.46 mg/mL and 0.54 mg/mL, respectively). HPLC analysis showed that both xylans hydrolysis produced xylooligosaccharides (XOS) with a degree of polymerization (DP) ranging from 2 to 9. The conversion yield was 77% after 24 h with xylobiose and xylotriose as the main end-reaction products. When assayed on alkali-extracted wheat straw heteroxylan, the Xyn10-HB produced active XOS with antioxidant activity determined by the DPPH radical scavenging method (IC50 of 0.54 mg/mL after 4 h). Owing to its various characteristics, Xyn10-HB xylanase is a promising candidate for multiple biotechnological applications.


Subject(s)
Endo-1,4-beta Xylanases , Recombinant Proteins , Xylans , Substrate Specificity , Hydrolysis , Xylans/metabolism , Endo-1,4-beta Xylanases/metabolism , Endo-1,4-beta Xylanases/genetics , Endo-1,4-beta Xylanases/chemistry , Recombinant Proteins/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Escherichia coli/genetics , Escherichia coli/metabolism , Hydrogen-Ion Concentration , Cloning, Molecular , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Bacterial Proteins/chemistry , Glucuronates/metabolism , Enzyme Stability , Kinetics , Molecular Weight , Oligosaccharides/metabolism , Disaccharides
20.
Carbohydr Polym ; 337: 122112, 2024 Aug 01.
Article in English | MEDLINE | ID: mdl-38710545

ABSTRACT

The growing concerns on environmental pollution and sustainability have raised the interest on the development of functional biobased materials for different applications, including food packaging, as an alternative to the fossil resources-based counterparts, currently available in the market. In this work, functional wood inspired biopolymeric nanocomposite films were prepared by solvent casting of suspensions containing commercial beechwood xylans, cellulose nanofibers (CNF) and lignosulfonates (magnesium or sodium), in a proportion of 2:5:3 wt%, respectively. All films presented good homogeneity, translucency, and thermal stability up to 153 °C. The incorporation of CNF into the xylan/lignosulfonates matrix provided good mechanical properties to the films (Young's modulus between 1.08 and 3.79 GPa and tensile strength between 12.75 and 14.02 MPa). The presence of lignosulfonates imparted the films with antioxidant capacity (DPPH radical scavenging activity from 71.6 to 82.4 %) and UV barrier properties (transmittance ≤19.1 % (200-400 nm)). Moreover, the films obtained are able to successfully delay the browning of packaged fruit stored over 7 days at 4 °C. Overall, the obtained results show the potential of using low-cost and eco-friendly resources for the development of sustainable active food packaging materials.


Subject(s)
Cellulose , Food Packaging , Lignin , Lignin/analogs & derivatives , Nanocomposites , Nanofibers , Tensile Strength , Wood , Xylans , Food Packaging/methods , Lignin/chemistry , Nanocomposites/chemistry , Cellulose/chemistry , Cellulose/analogs & derivatives , Wood/chemistry , Nanofibers/chemistry , Xylans/chemistry , Antioxidants/chemistry , Fruit/chemistry
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