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1.
Environ Int ; 188: 108725, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38759546

ABSTRACT

BACKGROUND: Lifelong health is dependent on prenatal growth and development, influenced by the placental intrauterine environment. Charged with dual functions--exchange of oxygen and nutrients as well as a barrier against toxins--the placenta itself is susceptible to environmental exposure to heavy metals. OBJECTIVE: To examine the use of placenta weight as a biomarker for heavy metal exposure using a large Japanese cohort of pregnant women. METHODS: The placenta weight, as a biomarker of exposure to heavy metals (cadmium, lead, and mercury), was investigated using data from the Japan Environment and Children's Study (2011-2014). Selenium and manganese were included as factors directly affecting fetal growth or heavy metal toxicity. Maternal blood samples collected in the second or third trimester were used to measure heavy metal concentrations. The association between maternal blood metal concentrations and placenta weight was explored by applying Z scores and multivariable logistic regression analysis and classifying participants into quartiles (Q1, Q2, Q3, and Q4) according to metal concentrations. RESULTS: This study included a total of 73,005 singleton pregnant women who delivered via live births and met the inclusion criteria. The median heavy metal concentrations in the maternal whole blood were 0.662 ng/g cadmium, 5.85 ng/g lead, 3.61 ng/g mercury, 168 ng/g selenium, and 15.3 ng/g manganese. Regression analysis revealed a significant correlation between placenta weight Z scores and maternal blood metal concentrations: cadmium, 0.0660 (standard error = 0.0074, p < 0.001); selenium, -0.3137 (standard error = 0.0276, p < 0.001); and manganese, 0.1483 (standard error = 0.0110, p < 0.001). CONCLUSION: This study provides a robust examination of the association between heavy metal exposure and placenta weight. Cadmium and manganese showed a positive correlation with significant differences, whereas selenium showed a negative correlation. Essential elements notably affect placenta weight differently. No significant association was noted between lead or mercury and placenta weight.


Subject(s)
Environmental Pollutants , Mercury , Metals, Heavy , Placenta , Selenium , Humans , Female , Pregnancy , Metals, Heavy/blood , Japan , Adult , Selenium/blood , Environmental Pollutants/blood , Mercury/blood , Maternal Exposure/statistics & numerical data , Cadmium/blood , Lead/blood , Manganese/blood , Organ Size/drug effects , Cohort Studies , Young Adult , Infant, Newborn , Biomarkers/blood
2.
Sci Total Environ ; 753: 141585, 2021 Jan 20.
Article in English | MEDLINE | ID: mdl-32890882

ABSTRACT

There has been little study on the effect of Asian dust exposure on respiratory symptoms among children who are vulnerable to environmental factors. In this panel study, we investigated the effect of Asian dust on respiratory symptoms among children with and without asthma, and their sensitivity. Children attending two elementary schools (137 total), and 23 children with asthma from cooperating medical institutions in Fukuoka prefecture were recruited. Subjects measured peak expiratory flow rate (PEF), and recorded asthma-like symptoms, cough, nasal symptoms and use of medication in a diary from April 1, 2013 to June 30, 2013. To assess exposure to Asian dust, we used Light Detection and Ranging (LIDAR) data. For the analysis of the association between Asian dust and respiratory symptoms, the case-crossover design and generalized estimating equation (GEE) models were used. Taking individual sensitivity to respiratory aggravation into consideration, the subjects were classified into three groups: children without asthma, children with asthma who do not use long-term preventive medication (CA) and children with asthma who use long-term preventive medication (CA-LTM). For CA, Asian dust exposure was significantly associated with asthma-like symptoms, with a hazard ratio of 5.17 (95%CI: 1.02=26.12) at Lag0, and the change in %maxPEF, -1.65% (95%CI:-2.82, -0.48) at Lag0. For children without asthma, a statistically significant association was found between Asian dust exposure and the change in %maxPEF, -0.56% (95%CI: -1.31, -0.08) at Lag1. However, no adverse effects were observed in CA-LTM. Temperature had significant effects on %maxPEF for three groups. Asian dust, photochemical oxidant and pollen caused simultaneously additive adverse effects on nasal symptoms for children without asthma. This study suggests the possibility that long-term preventive medication to manage asthma may suppress aggravation of respiratory symptoms due to Asian dust and may be an effective prevention.


Subject(s)
Asthma , Dust , Asthma/epidemiology , Child , Cross-Over Studies , Humans , Peak Expiratory Flow Rate , Pollen
3.
BMC Pregnancy Childbirth ; 19(1): 483, 2019 Dec 09.
Article in English | MEDLINE | ID: mdl-31818260

ABSTRACT

BACKGROUND: Gestational diabetes mellitus (GDM) has serious effects on both mother and child. Like Type 2 Diabetes Mellitus, it is increasing in prevalence world-wide. In addition to obesity, sleep duration has been named an important risk factor. Using a large cohort study, including data from 48,787 participants of the Japan Environment and Children's Study (JECS), we examined the association between sleep duration and both random blood glucose levels and GDM rates during pregnancy. METHODS: Random blood glucose levels were measured during pregnancy. GDM diagnosis was based on the results of 75 g oral glucose tolerance test. Additional anthropometric data was collected from questionnaires for statistical analysis. RESULTS: Compared to mothers averaging 7 to < 10 h sleep (reference group), women receiving < 5 h or ≥ 10 h sleep exhibited significantly elevated random blood glucose levels. This was associated with an elevated risk for positive GDM screening (< 5 h sleep: OR 1.17 (0.96-1.44) p = 0.126; ≥10 h sleep: OR 1.13 (1.03-1.25) p = 0.006). Calculating the risk for GDM, women sleeping < 5 h or ≥ 10 h exhibited elevated risks of 1.31-fold and 1.21 respectively. However, this trend was not found to be significant. CONCLUSIONS: Sleep is a critical factor in glucose metabolism, with both abnormally long and short sleep duration increasing random blood glucose levels in pregnant women. Moreover, the risk for positive GDM screening increases significantly with elevated sleep, ≥10 h per night. These findings are promising because they support the idea that sleep duration is a modifiable risk factor, and can be focused upon to improve health and pregnancy outcome.


Subject(s)
Blood Glucose/metabolism , Diabetes, Gestational/epidemiology , Pregnancy Complications/blood , Sleep Wake Disorders/blood , Sleep , Adult , Cohort Studies , Diabetes, Gestational/etiology , Female , Glucose Tolerance Test , Humans , Japan/epidemiology , Pregnancy , Pregnancy Complications/etiology , Risk Factors , Sleep Wake Disorders/complications , Time Factors
4.
Environ Health Prev Med ; 24(1): 40, 2019 Jun 07.
Article in English | MEDLINE | ID: mdl-31174461

ABSTRACT

BACKGROUND: Placenta previa and placenta accreta associate with high morbidity and mortality for both mothers and fetus. Metal exposure may have relationships with placenta previa and placenta accreta. This study analyzed the associations between maternal metal (cadmium [Cd], lead [Pb], mercury [Hg], selenium [Se], and manganese [Mn]) concentrations and placenta previa and placenta accreta. METHODS: We recruited 17,414 women with singleton pregnancies. Data from a self-administered questionnaire regarding the first trimester and medical records after delivery were analyzed. Maternal blood samples were collected to measure metal concentrations. The subjects were classified into four quartiles (Q1, Q2, Q3, and Q4) according to metal concentrations. RESULTS: The odds ratio for placenta previa was significantly higher among subjects with Q4 Cd than those with Q1 Cd. The odds ratio for placenta previa was significantly higher for subjects with Q2 Pb than those with Q1 Pb. CONCLUSION: Participants with placenta previa had higher Cd concentrations. However, this study was cross-sectional and lacked important information related to Cd concentration, such as detailed smoking habits and sources of Cd intake. In addition, the subjects in this study comprised ordinary pregnant Japanese women, and it was impossible to observe the relationship between a wide range of Cd exposure and placenta previa. Therefore, epidemiological and experimental studies are warranted to verify the relationship between Cd exposure and pregnancy abnormalities.


Subject(s)
Metals, Heavy/metabolism , Placenta Accreta/metabolism , Placenta Previa/metabolism , Selenium/metabolism , Adult , Cross-Sectional Studies , Female , Humans , Japan , Metals, Heavy/blood , Pregnancy , Selenium/blood
5.
J Asthma ; 55(7): 712-719, 2018 07.
Article in English | MEDLINE | ID: mdl-29309210

ABSTRACT

OBJECTIVE: In recent years, air pollutant concentrations in Japan have decreased slightly; however, there are growing concerns about the influences of transnational air pollution on respiratory illness. We aimed to clarify the short-term association between the ambient air pollution and respiratory symptoms among children without asthma, children with asthma not using long-term medications (CA-nonLTM), and those using them (CA-LTM). METHODS: A total of 138 children attending 2 primary schools and 71 children with asthma regularly visiting cooperating medical institutions were recruited. Study participants measured peak expiratory flow (PEF) twice a day and recorded coughing, nasal symptoms, and medication use in a diary. Predicted associations between daily air pollutant concentrations and respiratory symptoms, and PEF were evaluated using case-crossover and generalized estimate equation models. RESULTS: Changes in %maxPEF per 10 ppb oxidant (Ox) increase in children without asthma, CA-nonLTM, and CA-LTM were -0.26% (95% CI: -0.49, -0.03), -0.51% (95% CI: -0.89, -0.12), and -0.20% (95% CI: -0.42, 0.01), respectively. The odds ratios for coughing per 10 ppb Ox increase in the Lag0 model were 1.34 (95% CI: 1.11, 1.60), 1.52 (95% CI: 1.12, 2.07), and 1.06 (95% CI: 0.93, 1.20), respectively. These suggested that the Ox concentration has graded effects on %maxPEF and coughing, in the following descending order, CA-nonLTM, children without asthma, and CA-LTM. The Ox concentration was also positively associated with nasal symptoms in children without asthma and CA-LTM. CONCLUSION: Our results suggest that using long-term medications to manage asthma may play an important role in preventing exacerbation of respiratory symptoms due to air pollution.


Subject(s)
Air Pollutants/adverse effects , Air Pollution/adverse effects , Asthma/etiology , Cough/etiology , Peak Expiratory Flow Rate , Air Pollutants/analysis , Air Pollution/analysis , Anti-Asthmatic Agents/therapeutic use , Asthma/diagnosis , Asthma/drug therapy , Asthma/pathology , Child , Cough/diagnosis , Cough/drug therapy , Cross-Over Studies , Disease Progression , Female , Humans , Japan , Male , Oxidants/adverse effects , Ozone , Respiratory Function Tests
6.
BMC Pregnancy Childbirth ; 14: 181, 2014 May 30.
Article in English | MEDLINE | ID: mdl-24886642

ABSTRACT

BACKGROUND: Sufficient amino acid transport activity (AAT) is indispensable for appropriate fetal growth. Studies suggest that placental nutrient uptake activity is responsive to both maternal and fetal nutrient demands. We hypothesize that under conditions of limited nutrient availability to the fetus, as often present in preeclampsia, intrauterine growth restriction (IUGR), and insufficient weight-gain during pregnancy, a general adaptive response aimed to increase amino acid transport activity may be observed in the placenta. METHOD: A total of 40 placentas from full-term (n = 10) and pre-term (average gestational period = 34.8 weeks, n = 10) normal pregnancies, IUGR (n = 10), and preeclampsia (n = 10) associated pregnancies were looked at by immunohistochemistry followed by relative qualitative scoring to compare expression levels and localization of System L, ASCT2, and mTOR proteins. RESULT: Microvillous syncytiotrophoblast (ST) in placenta of pregnancies complicated by IUGR or preeclampsia (PE) showed significant increases in the levels of System L amino acid transport proteins 4F2hc and LAT1 compared to both full-term control and pre-term (early gestation control) pregnancies seperately (p < 0.05). Elevated mTOR protein was uniquely higher in IUGR placentas compared to full-term controls (P = 0.0026). Total cellular ASCT2 transporter protein levels were similar in all groups, however, levels of ASCT2 protein localized to the ST microvillous membrane (MVM) were significantly lower in IUGR compared to both full-term and pre-term pregnancies (P = 0.0006, 0.03, respectively). Additionally, ASCT2 and mTOR protein levels were positively associated with maternal pre-pregnancy BMI (P = 0.046, 0.048, respectively). CONCLUSION: There are three important findings based upon the present study. First, in conditions of limited nutrient availability, such as PE or IUGR, there is an overall increase in the level of System L and mTOR protein expression in the ST, suggestive of an adaptive response. Second, a decrease in ASCT2 protein at the ST MVM suggests a post-translational event that may decrease AAT activity in IUGR placentas. Third, a physiological link between transporter expression and pre-pregnancy BMI is suggested based upon a positive association observed with ASCT2 and mTOR expression values.


Subject(s)
Adaptation, Physiological , Fetal Growth Retardation/metabolism , Placenta/metabolism , Pre-Eclampsia/metabolism , Premature Birth/metabolism , Term Birth/metabolism , Adult , Amino Acid Transport System ASC/metabolism , Amino Acid Transport System L/metabolism , Body Mass Index , Cell Membrane/metabolism , Female , Fusion Regulatory Protein 1, Heavy Chain/metabolism , Humans , Large Neutral Amino Acid-Transporter 1/metabolism , Minor Histocompatibility Antigens , Pregnancy , TOR Serine-Threonine Kinases/metabolism , Trophoblasts/metabolism , Weight Gain , Young Adult
7.
J Allergy Clin Immunol ; 127(1): 254-61, 261.e1-6, 2011 Jan.
Article in English | MEDLINE | ID: mdl-21126757

ABSTRACT

BACKGROUND: Asthma is a major public health burden worldwide. Studies from our group and others have demonstrated that SERPINB3 and SERPINB4 are induced in patients with asthma; however, their mechanistic role in asthma has yet to be determined. OBJECTIVE: To evaluate the role of Serpin3a, the murine homolog of SERPINB3 and SERPINB4, in asthma. METHODS: We studied wild-type Balb/c and Serpinb3a-null mice in house dust mite or IL-13-induced asthma models and evaluated airway hyperresponsiveness, inflammation, and goblet cell hyperplasia. RESULTS: Airway hyperresponsiveness and goblet cell hyperplasia were markedly attenuated in the Serpinb3a-null mice compared with the wild-type mice after allergen challenge, with minimal effects on inflammation. Expression of sterile alpha motif pointed domain containing v-ets avian erythroblastosis virus E26 oncogene homolog transcription factor (SPDEF), a transcription factor that mediates goblet cell hyperplasia, was decreased in the absence of Serpinb3a. IL-13-treated Serpinb3a-null mice showed attenuated airway hyperresponsiveness, inflammation, and mucus production. CONCLUSION: Excessive mucus production and mucus plugging are key pathologic features of asthma, yet the mechanisms responsible for mucus production are not well understood. Our data reveal a novel nonredundant role for Serpinb3a in mediating mucus production through regulation of SPDEF expression. This pathway may be used to target mucus hypersecretion effectively.


Subject(s)
Asthma/immunology , Mucus/immunology , Proto-Oncogene Proteins c-ets/immunology , Serpins/immunology , Animals , Asthma/metabolism , Asthma/pathology , Bronchoalveolar Lavage Fluid , Cell Separation , Enzyme-Linked Immunosorbent Assay , Flow Cytometry , Gene Expression , Gene Expression Regulation/immunology , Goblet Cells/immunology , Goblet Cells/metabolism , Immunoglobulin E/blood , Immunoglobulin G/blood , Immunohistochemistry , Mice , Mice, Inbred BALB C , Mice, Knockout , Mucus/metabolism , Proto-Oncogene Proteins c-ets/biosynthesis , Reverse Transcriptase Polymerase Chain Reaction , Serpins/metabolism
8.
J Clin Invest ; 120(9): 3365-76, 2010 Sep.
Article in English | MEDLINE | ID: mdl-20679732

ABSTRACT

The hallmark of human Mycobacterium tuberculosis infection is the presence of lung granulomas. Lung granulomas can have different phenotypes, with caseous necrosis and hypoxia present within these structures during active tuberculosis. Production of NO by the inducible host enzyme NOS2 is a key antimycobacterial defense mechanism that requires oxygen as a substrate; it is therefore likely to perform inefficiently in hypoxic regions of granulomas in which M. tuberculosis persists. Here we have used Nos2-/- mice to investigate host-protective mechanisms within hypoxic granulomas and identified a role for host serine proteases in hypoxic granulomas in determining outcome of disease. Nos2-/- mice reproduced human-like granulomas in the lung when infected with M. tuberculosis in the ear dermis. The granulomas were hypoxic and contained large amounts of the serine protease cathepsin G and clade B serine protease inhibitors (serpins). Extrinsic inhibition of serine protease activity in vivo resulted in distorted granuloma structure, extensive hypoxia, and increased bacterial growth in this model. These data suggest that serine protease activity acts as a protective mechanism within hypoxic regions of lung granulomas and present a potential new strategy for the treatment of tuberculosis.


Subject(s)
Granuloma/enzymology , Granuloma/microbiology , Lung/microbiology , Mycobacterium tuberculosis/growth & development , Mycobacterium tuberculosis/genetics , Serine Proteases/physiology , Tuberculosis, Pulmonary/enzymology , Tuberculosis, Pulmonary/pathology , Animals , Cathepsin G/metabolism , Hypoxia , Mice , Mice, Inbred C57BL , Mice, Knockout , Necrosis , Pulmonary Fibrosis/enzymology , Tuberculosis, Pulmonary/microbiology
9.
Nat Med ; 14(3): 275-81, 2008 Mar.
Article in English | MEDLINE | ID: mdl-18264110

ABSTRACT

Emerging evidence supports the concept that T helper type 17 (T(H)17) cells, in addition to mediating autoimmunity, have key roles in mucosal immunity against extracellular pathogens. Interleukin-22 (IL-22) and IL-17A are both effector cytokines produced by the T(H)17 lineage, and both were crucial for maintaining local control of the Gram-negative pulmonary pathogen, Klebsiella pneumoniae. Although both cytokines regulated CXC chemokines and granulocyte colony-stimulating factor production in the lung, only IL-22 increased lung epithelial cell proliferation and increased transepithelial resistance to injury. These data support the concept that the T(H)17 cell lineage and its effector molecules have evolved to effect host defense against extracellular pathogens at mucosal sites.


Subject(s)
Immunity, Mucosal/immunology , Interleukins/immunology , Klebsiella Infections/immunology , Klebsiella pneumoniae/immunology , Animals , Cells, Cultured , Chemokines/metabolism , Cystic Fibrosis/immunology , Cystic Fibrosis/pathology , Epithelial Cells/metabolism , Humans , Interleukin-17/immunology , Interleukin-23/immunology , Interleukins/metabolism , Klebsiella pneumoniae/metabolism , Lung/metabolism , Lung/microbiology , Lymph Nodes/cytology , Male , Mice , Mice, Inbred C57BL , Neutralization Tests , Receptors, Interleukin/genetics , Receptors, Interleukin/metabolism , Respiratory Mucosa/cytology , Spleen/microbiology , T-Lymphocytes/immunology , Up-Regulation , Interleukin-22
10.
Cell ; 130(6): 1108-19, 2007 Sep 21.
Article in English | MEDLINE | ID: mdl-17889653

ABSTRACT

Extracellular serpins such as antithrombin and alpha1-antitrypsin are the quintessential regulators of proteolytic pathways. In contrast, the biological functions of the intracellular serpins remain obscure. We now report that the C. elegans intracellular serpin, SRP-6, exhibits a prosurvival function by blocking necrosis. Minutes after hypotonic shock, srp-6 null animals underwent a catastrophic series of events culminating in lysosomal disruption, cytoplasmic proteolysis, and death. This newly defined hypo-osmotic stress lethal (Osl) phenotype was dependent upon calpains and lysosomal cysteine peptidases, two in vitro targets of SRP-6. By protecting against both the induction of and the lethal effects from lysosomal injury, SRP-6 also blocked death induced by heat shock, oxidative stress, hypoxia, and cation channel hyperactivity. These findings suggest that multiple noxious stimuli converge upon a peptidase-driven, core stress response pathway that, in the absence of serpin regulation, triggers a lysosomal-dependent necrotic cell death routine.


Subject(s)
Caenorhabditis elegans Proteins/metabolism , Caenorhabditis elegans/metabolism , Lysosomes/metabolism , Serpins/metabolism , Animals , Caenorhabditis elegans/enzymology , Caenorhabditis elegans/genetics , Caenorhabditis elegans/ultrastructure , Caenorhabditis elegans Proteins/genetics , Calcium/metabolism , Calcium Channels/metabolism , Calpain/genetics , Calpain/metabolism , Cell Hypoxia , Cell Size , Cysteine Endopeptidases/genetics , Cysteine Endopeptidases/metabolism , Genotype , Hot Temperature , Lysosomes/enzymology , Lysosomes/ultrastructure , Mutation , Necrosis , Osmotic Pressure , Oxidative Stress , Phenotype , RNA Interference , RNA, Small Interfering/metabolism , Serpins/genetics , Time Factors
11.
J Biol Chem ; 282(34): 24948-60, 2007 Aug 24.
Article in English | MEDLINE | ID: mdl-17562709

ABSTRACT

SERPINB11, the last of 13 human clade B serpins to be described, gave rise to seven different isoforms. One cDNA contained a premature termination codon, two contained splice variants, and four contained full-length open reading frames punctuated by eight single nucleotide polymorphisms (SNPs). The SNPs encoded amino acid variants located within the serpin scaffold but not the reactive site loop (RSL). Although the mouse orthologue, Serpinb11, could inhibit trypsin-like peptidases, SERPINB11 showed no inhibitory activity. To determine whether the human RSL targeted a different class of peptidases or the serpin scaffold was unable to support inhibitory activity, we synthesized chimeric human and mouse proteins, in which the RSLs had been swapped. The human RSL served as a trypsin inhibitor when supported by mouse scaffold sequences. Conversely, the mouse RSL on the human scaffold showed no inhibitory activity. These findings suggested that variant residues in the SERPINB11 scaffold impaired serpin function. SDS-PAGE analysis supported this notion as RSL-cleaved SERPINB11 was unable to undergo the stressed-to-relaxed transition typical of inhibitory type serpins. Mutagenesis studies supported this hypothesis, since the reversion of amino acid sequences in helices D and I to those conserved in other clade B serpins partially restored the ability of SERPINB11 to form covalent complexes with trypsin. Taken together, these findings suggested that SERPINB11 SNPs encoded amino acids in the scaffold that impaired RSL mobility, and HapMap data showed that the majority of genomes in different human populations harbored these noninhibitory SERPINB11 alleles. Like several other serpin superfamily members, SERPINB11 has lost inhibitory activity and may have evolved a noninhibitory function.


Subject(s)
Polymorphism, Single Nucleotide , Serpins/physiology , Alleles , Amino Acid Sequence , Animals , Humans , Mice , Models, Molecular , Molecular Conformation , Molecular Sequence Data , Mutagenesis , Mutagenesis, Site-Directed , Recombinant Proteins/chemistry , Sequence Homology, Amino Acid , Serpins/chemistry , Tissue Distribution
12.
Front Biosci ; 11: 581-94, 2006 Jan 01.
Article in English | MEDLINE | ID: mdl-16146754

ABSTRACT

Serpins are a highly conserved superfamily of serine and papain-like cysteine proteinase inhibitors that are divided phylogenetically into clades. Serpins also can be divided anatomically into those that reside predominately outside or inside cells. While the activities of the extracellular serpins are well understood, the biological functions, as well as the overall distribution of the intracellular (serpinIC) serpins is less well defined. Conceivably, the biological function of the serpinsIC might be revealed by analysis of species with genomes of lower complexity. To this end, we sought to define the clade L serpin repertoire of Caenorhabditis elegans and other nematode species. Analysis of the C. elegans genome revealed the presence of 9 serpin genes. Five genes encoded for full-length serpins with functional reactive site loops (RSL). By definition, these genes were designated proteinase inhibitory-type, RSL-encoding serpins. Four of the C. elegans genes encoded for proteins without an RSL or transcripts with premature termination codons. The high percentage of non-RSL encoding to RSL-encoding serpin genes suggested that the former served a unique biological function rather than residing in the genome as simple pseudogenes. If this hypothesis was correct, we expected these non-RSL encoding genes to be conserved precisely in other Caenorhabditis species. However, in contrast to the RSL-encoding serpins that were well conserved and segregated into 3 sub-clades, we failed to detect non-RSL encoding serpin orthologues in the genomes of Caenorhabditis briggsae and Caenorhabditis remanei. These data suggested that unlike their RSL-encoding paralogues, the relatively high percentage of non-RSL encoding serpins in C. elegans was a vestige of recent duplication events and these latter genes were unlikely to serve essential functions in Caenorhabditis species.


Subject(s)
Caenorhabditis/metabolism , Caenorhabditis/physiology , Protease Inhibitors/pharmacology , Serpins/physiology , Algorithms , Amino Acid Sequence , Animals , Base Sequence , Binding Sites , Caenorhabditis elegans , Codon , Conserved Sequence , Databases, Genetic , Gene Expression Regulation , Models, Biological , Models, Genetic , Molecular Sequence Data , Phylogeny , Protein Conformation , Protein Structure, Tertiary , RNA, Messenger/metabolism , Sequence Homology, Amino Acid , Sequence Homology, Nucleic Acid , Serpins/chemistry , Serpins/metabolism , Species Specificity , Time Factors
13.
Genomics ; 84(1): 166-75, 2004 Jul.
Article in English | MEDLINE | ID: mdl-15203214

ABSTRACT

The clade B serpins occupy a unique niche among a larger superfamily by predominantly regulating intracellular proteolysis. In humans, there are 13 family members that map to serpin gene clusters at either 6p25 or 18q21. While most of these serpins display a unique inhibitory profile and appear to be well conserved in mammals, the clade B loci of several species show evidence of relatively recent genomic amplification events. However, it is not clear whether these serpin gene amplification events yield paralogs with functional redundancy or, through selective pressure, inhibitors with more diverse biochemical activities. A recent comparative genomic analysis of the mouse clade B cluster at 1D found nearly complete conservation of gene number, order, and orientation relative to those of 18q21 in humans. The only exception was the squamous cell carcinoma antigen (SCCA) locus. The human SCCA locus contains two genes, SERPINB3 (SCCA1) and SERPINB4 (SCCA2), whereas the mouse locus contains four serpins and three pseudogenes. At least two of these genes encoded functional, dual cross-class proteinase inhibitors. Mouse Serpinb3a was shown previously to inhibit both chymotrypsin-like serine and papain-like cysteine proteinases. We now report that mouse Serpinb3b extends the inhibitory repertoire of the mouse SCCA locus to include a second cross-class inhibitor with activity against both papain-like cysteine and trypsin-like serine proteinases. These findings confirmed that the genomic expansion of the clade B serpins in the mouse was associated with a functional diversification of inhibitory activity.


Subject(s)
Antigens, Neoplasm/chemistry , Antigens, Neoplasm/genetics , Cysteine Endopeptidases/chemistry , Quantitative Trait Loci/genetics , Serine Endopeptidases/chemistry , Serpins/chemistry , Serpins/genetics , Amino Acid Sequence , Animals , Chromosomes, Human, Pair 18/genetics , Chromosomes, Human, Pair 6/genetics , Humans , Mice , Molecular Sequence Data , Protease Inhibitors/chemistry , Pseudogenes/genetics , Substrate Specificity/genetics , Substrate Specificity/physiology
14.
Genomics ; 84(1): 176-84, 2004 Jul.
Article in English | MEDLINE | ID: mdl-15203215

ABSTRACT

The human clade B serpins neutralize serine or cysteine proteinases and reside predominantly within the intracellular compartment. Genomic analysis shows that the 13 human clade B serpins map to either 6p25 (n = 3) or 18q21 (n = 10). Similarly, the mouse clade B serpins map to syntenic loci at 13A3.2 and 1D, respectively. The mouse clade B cluster at 13A3.2 shows a marked expansion in the number of serpin genes (n = 15). The purpose of this study was to determine whether a similar expansion occurred at 1D. Using STS-content mapping, comparative genomic DNA sequence analysis, and cDNA cloning, we found that the mouse clade B cluster at 1D showed nearly complete conservation of gene number, order, and orientation relative to those of 18q21. The only exception was the squamous cell carcinoma antigen (SCCA) locus. The human SCCA locus contains two genes, SERPINB3 (SCCA1) and SERPINB4 (SCCA2), whereas the mouse locus contains four serpins and three pseudogenes. Based on phylogenetic analysis and predicted amino acid sequences, amplification of the mouse SCCA locus occurred after rodents and primates diverged and was associated with some diversification of proteinase inhibitory activity relative to that of humans.


Subject(s)
Antigens, Neoplasm/genetics , Chromosomes, Human, Pair 18/genetics , Multigene Family/genetics , Phylogeny , Quantitative Trait Loci/genetics , Sequence Homology, Amino Acid , Serpins/genetics , Amino Acid Sequence , Animals , Antigens, Neoplasm/metabolism , Cysteine Endopeptidases/metabolism , Humans , Mice , Molecular Sequence Data , Protease Inhibitors/chemistry , Serine Endopeptidases/metabolism , Serpins/metabolism
15.
J Biol Chem ; 279(15): 15448-59, 2004 Apr 09.
Article in English | MEDLINE | ID: mdl-14739286

ABSTRACT

High molecular weight serpins are members of a large superfamily of structurally conserved proteins that inactivate target proteinases by a suicide substrate-like mechanism. In vertebrates, different clades of serpins distribute predominantly to either the intracellular or extracellular space. Although much is known about the function, structure, and inhibitory mechanism of circulating serpins such as alpha(1)-antitrypsin (SERPINA1) and antithrombin III (SERPINC1), relatively little is known about the function of the vertebrate intracellular (clade B) serpins. To gain a better understanding of the biology of the intracellular serpins, we initiated a comparative genomics study using Caenorhabditis elegans as a model system. A screen of the C. elegans genomic and cDNA databases revealed nine serpin genes, tandemly arrayed on chromosome V. Although the C. elegans serpins represent a unique clade (L), they share significant functional homology with members of the clade B group of intracellular serpins, since they lack typical N-terminal signal peptides and reside intracellularly. To determine whether nematode serpins function as proteinase inhibitors, one family member, srp-2, was chosen for further characterization. Biochemical analysis of recombinant SRP-2 protein revealed SRP-2 to be a dual cross-class inhibitor of the apoptosis-related serine proteinase, granzyme B, and the lysosomal cysteine proteinases, cathepsins K, L, S, and V. Analysis of temporal and spatial expression indicated that SRP-2 was present during early embryonic development and highly expressed in the intestine and hypoderm of larval and adult worms. Transgenic animals engineered to overexpress SRP-2 were slow growing and/or arrested at the first, second, or third larval stages. These data suggest that perturbations of serpin-proteinase balance are critical for correct postembryonic development in C. elegans.


Subject(s)
Caenorhabditis elegans Proteins/chemistry , Caenorhabditis elegans/embryology , Caenorhabditis elegans/physiology , Serpins/chemistry , Serpins/physiology , Amino Acid Sequence , Animals , Animals, Genetically Modified , Apoptosis , Base Sequence , Caenorhabditis elegans Proteins/physiology , DNA, Complementary/metabolism , Databases as Topic , Dose-Response Relationship, Drug , Electrophoresis, Polyacrylamide Gel , Enzyme Inhibitors/pharmacology , Gene Library , Genes, Reporter , Granzymes , Green Fluorescent Proteins , Humans , Immunoblotting , Kinetics , Luminescent Proteins/metabolism , Microscopy, Fluorescence , Models, Genetic , Molecular Sequence Data , Promoter Regions, Genetic , Protein Binding , Protein Structure, Tertiary , Recombinant Proteins/chemistry , Serine Endopeptidases/pharmacology , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Temperature , Time Factors
16.
Methods ; 32(2): 73-92, 2004 Feb.
Article in English | MEDLINE | ID: mdl-14698621

ABSTRACT

Many gene superfamilies have hundreds or thousands of members and hence pose a significant challenge when performing a large-scale phylogenetic analysis. Derivation of the most accurate alignment possible and inference of evolutionary relationships (with an appropriate measure of confidence) are significant "bottlenecks" in the process. A generally applicable strategy is outlined for identifying and aligning sequences, performing simple analysis of the resulting alignment, and inferring evolutionary relationships. Reference is made to the serpin superfamily. The 'partition cluster' method, a relatively rapid technique for extracting underlying associations from phylogenetic bootstrap trees, is also presented.


Subject(s)
Computational Biology/methods , Evolution, Molecular , Serpins/genetics , Conserved Sequence/genetics , Databases, Nucleic Acid , Databases, Protein , Imaging, Three-Dimensional , Mutation/genetics , Phylogeny , Protein Structure, Secondary , Sequence Alignment/methods , Sequence Homology, Amino Acid , Sequence Homology, Nucleic Acid , Serpins/chemistry , Software , Software Design , Structural Homology, Protein
17.
Biochemistry ; 41(9): 3189-99, 2002 Mar 05.
Article in English | MEDLINE | ID: mdl-11863458

ABSTRACT

SQN-5 is a mouse serpin that is highly similar to the human serpins SCCA1 (SERPINB3) and SCCA2 (SERPINB4). Previous studies characterizing the biochemical activity of SQN-5 showed that this serpin, like SCCA2, inhibited the chymotrypsin-like enzymes mast cell chymase and cathepsin G. Using an expanded panel of papain-like cysteine proteinases, we now show that SQN-5, like SCCA1, inhibited cathepsins K, L, S, and V but not cathepsin B or H. These interactions were characterized by stoichiometries of inhibition that were nearly 1:1 and second-order rate constants of >10(4) M(-1) s(-1). Reactive site loop (RSL) cleavage analysis showed that SQN-5 employed different reactive centers to neutralize the serine and cysteine proteinases. To our knowledge, this is the first serpin that serves as a dual inhibitor of both chymotrypsin-like serine and the papain-like cysteine proteinases by employing an RSL-dependent inhibitory mechanism. The ability of serpins to inhibit both serine and/or papain-like cysteine proteinases may not be a recent event in mammalian evolution. Phylogenetic studies suggested that the SCCA and SQN genes evolved from a common ancestor approximately 250-280 million years ago. When the fact that mammals and birds diverged approximately 310 million years ago is considered, an ancestral SCCA/SQN-like serpin with dual inhibitory activity may be present in many mammalian genomes.


Subject(s)
Cysteine Endopeptidases/metabolism , Protease Inhibitors/pharmacology , Serine Endopeptidases/metabolism , Serpins/pharmacology , Amino Acid Sequence , Animals , Antigens, Neoplasm/chemistry , Antigens, Neoplasm/metabolism , Binding, Competitive , Cathepsins/metabolism , Cysteine Endopeptidases/drug effects , Humans , Kinetics , Mice , Molecular Sequence Data , Phylogeny , Protease Inhibitors/chemistry , Protease Inhibitors/classification , Sequence Homology, Amino Acid , Serine Endopeptidases/drug effects , Serpins/chemistry , Serpins/classification
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