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1.
Cell Death Discov ; 6: 86, 2020.
Article in English | MEDLINE | ID: mdl-33014430

ABSTRACT

Epithelial-mesenchymal transition (EMT) has recently been associated with tumor progression, metastasis, and chemotherapy resistance in several tumor types. We performed a differential gene expression analysis comparing paclitaxel-resistant vs. paclitaxel-sensitive breast cancer cells that showed the upregulation of EDIL3 (EGF Like Repeats and Discoidin I Like Domains Protein 3). This gene codifies an extracellular matrix protein that has been identified as a novel regulator of EMT, so we studied its role in tumor progression and paclitaxel response. Our results demonstrated that EDIL3 expression levels were increased in paclitaxel-resistant breast and prostate cancer cells, and in subsets of high-grade breast and prostate tumors. Moreover, we observed that EDIL3 modulated the expression of EMT markers and this was impaired by cilengitide, which blocks the EDIL3-integrin αVß3 interaction. EDIL3 knockdown reverted EMT and sensitized cells to paclitaxel. In contrast, EDIL3 overexpression or the culture of cells in the presence of EDIL3-enriched medium induced EMT and paclitaxel resistance. Adding cilengitide resensitized these cells to paclitaxel treatment. In summary, EDIL3 may contribute to EMT and paclitaxel resistance through autocrine or paracrine signaling in cancer cells. Blockade of EDIL3-integrin αVß3 interaction by cilengitide restores sensitivity to paclitaxel and reverts EMT in paclitaxel-resistant cancer cells. Combinations of cilengitide and taxanes could be beneficial in the treatment of subsets of breast and prostate cancers.

4.
Ann Hum Genet ; 72(Pt 4): 454-62, 2008 Jul.
Article in English | MEDLINE | ID: mdl-18510647

ABSTRACT

Retinitis pigmentosa (RP) is a clinically and genetically heterogeneous group of retinal dystrophies, characterised by rod photoreceptor cell degeneration with autosomal recessive RP (arRP) as the commonest form worldwide. To date, a total of 26 loci have been reported for arRP, each having a prevalence of 1-5%, except for the RP25 locus which was identified as the genetic cause of 14% of arRP cases in Spain. In order to validate the original linkage of RP25, we undertook a total genome scan using the 10K GeneChip mapping array on three of the previously linked families. The data obtained supported the initial findings of linkage. Additionally, linkage analysis in 18 newly ascertained arRP families was performed using microsatellite markers spanning the chromosome 6p12.1-q15 interval. Five out of the 18 families showed suggestive evidence of linkage to RP25, hence supporting the high prevalence of this locus in the Spanish population. Furthermore, the finding of a crossover in one of these families is likely to have refined the disease interval from the original 16 cM to only a 2.67 cM region between D6S257 and D6S1557.


Subject(s)
Chromosomes, Human, Pair 6/genetics , Genetic Linkage , Oligonucleotide Array Sequence Analysis/methods , Retinitis Pigmentosa/genetics , Family , Female , Genome, Human , Genotype , Humans , Lod Score , Male , Microsatellite Repeats , Pedigree , Spain
5.
Ann Hum Genet ; 72(Pt 4): 463-77, 2008 Jul.
Article in English | MEDLINE | ID: mdl-18510646

ABSTRACT

A large scale bioinformatics and molecular analysis of a 34 Mb interval on chromosome 6q12 was undertaken as part of our ongoing study to identify the gene responsible for an autosomal recessive retinitis pigmentosa (arRP) locus, RP25. Extensive bioinformatics analysis indicated in excess of 110 genes within the region and we also noted unfinished sequence on chromosome 6q in the Human Genome Database, between 58 and 61.2 Mb. Forty three genes within the RP25 interval were considered as good candidates for mutation screening. Direct sequence analysis of the selected genes in 7 Spanish families with arRP revealed a total of 244 sequence variants, of which 67 were novel but none were pathogenic. This, together with previous reports, excludes 60 genes within the interval ( approximately 55%) as disease causing for RP. To investigate if copy number variation (CNV) exists within RP25, a comparative genomic hybridization (CGH) analysis was performed on a consanguineous family. A clone from the tiling path array, chr6tp-19C7, spanning approximately 100-Kb was found to be deleted in all affected members of the family, leading to a major refinement of the interval. This will eventually have a significant impact on cloning of the RP25 gene.


Subject(s)
Chromosome Mapping , Chromosomes, Human, Pair 6/genetics , Retinitis Pigmentosa/genetics , Computational Biology , DNA Mutational Analysis , Gene Deletion , Genetic Linkage , Genome, Human , Humans , Molecular Sequence Data , Mutation , Nucleic Acid Hybridization , Pedigree
6.
Ann Hum Genet ; 72(Pt 1): 26-34, 2008 Jan.
Article in English | MEDLINE | ID: mdl-17803723

ABSTRACT

Retinitis pigmentosa (RP) is a group of retinal dystrophies characterised primarily by rod photoreceptor cell degeneration. Exhibiting great clinical and genetic heterogeneity, RP be inherited as an autosomal dominant (ad) and recessive (ar), X-linked (xl) and digenic disorder. RP25, a locus for arRP, was mapped to chromosome 6p12.1-q14.1 where several retinal dystrophy loci are located. A gene expressed in the retina, FAM46A, mapped within the RP25 locus, and computational data revealed its involvement in retinal signalling pathways. Therefore, we chose to perform molecular evaluation of this gene as a good candidate in arRP families linked to the RP25 interval. A comprehensive bioinformatic and retinal tissue expression characterisation of FAM46A was performed, together with mutation screening of seven RP25 families. Herein we present 4 novel sequence variants, of which one is a novel deletion within a low complexity region close to the initiation codon of FAM46A. Furthermore, we have characterised for the first time a coding tandem variation in the Caucasian population. This study reports on bioinformatic and moleculardata for the FAM46A gene that may give a wider insight into the putative function of this gene and its pathologic relevance to RP25 and other retinal diseases mapping within the 6q chromosomal interval.


Subject(s)
Family , Genes, Recessive , Minisatellite Repeats/genetics , Retinitis Pigmentosa/genetics , Alleles , Base Sequence , Case-Control Studies , Chromosome Mapping , Chromosomes, Human, Pair 6 , Computational Biology/methods , DNA Mutational Analysis , Gene Frequency , Humans , Introns , Pedigree , Polymorphism, Single Nucleotide , Retinitis Pigmentosa/pathology , Sequence Deletion , Spain
7.
Analyst ; 132(4): 307-13, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17554409

ABSTRACT

An innovative analytical methodology for the rapid identification of aflatoxin-producing moulds belonging to Aspergillus genus is presented here. The procedure is based on the measurement, using a fibre-optic luminometer, of the room temperature phosphorescence (RTP) emitted by aflatoxins produced by isolated aflatoxigenic strains, cultured in a special culture medium consisting of malt extract agar modified with beta-cyclodextrin and sodium deoxycholate for RTP induction. Unequivocal detection of the presence of aflatoxins in the culture medium is achieved within the first 36 h of incubation at 32 degrees C, owing to the selectivity and sensitivity of the RTP emission, as compared with the minimum of 72 h needed using a conventional microbiological method. In a first step, the capability of aflatoxin standard solutions to emit analytically useful RTP was evaluated. In this line all experimental conditions were optimised for in vitro induction of RTP from aflatoxins. In a second step, a simple analytical test was developed and it has been evaluated for the rapid identification of aflatoxigenic strains, as a discriminating assay from non-aflatoxigenic strains based on the measurement of experimental RTP emission observed. Confirmation of aflatoxin production on the studied culture plates was accomplished by means of an HPLC/fluorescence reference method.


Subject(s)
Aflatoxins/biosynthesis , Aspergillus/isolation & purification , Aspergillus/metabolism , Food Microbiology , Fiber Optic Technology , Luminescent Measurements/instrumentation , Luminescent Measurements/methods , Mycological Typing Techniques/instrumentation , Mycological Typing Techniques/methods
8.
Ann Hum Genet ; 71(Pt 3): 281-94, 2007 May.
Article in English | MEDLINE | ID: mdl-17156103

ABSTRACT

Autosomal recessive retinitis pigmentosa (arRP) is the commonest form of RP worldwide. To date 22 loci have been implicated in the pathogenesis of this disease; however none of these loci independently account for a significant proportion of recessive RP. Linkage studies of arRP in consanguineous families have been mainly based on homozygosity mapping, but this strategy cannot be applied in the case of non-consanguineous families. Therefore, we implemented a systematic approach for identifying the disease locus in three non-consanguineous Chinese families with arRP. Initially, linkage analysis using SNPs/microsatellite markers or mutation screening of known arRP genes excluded all loci/genes except RP25 on chromosome 6. Subsequently a whole genome scan for the three families using the 10K GeneChip Mapping Array was performed, in order to identify the possible disease locus. To the best of our knowledge this is the first report on the utilisation of the 10K GeneChip to study linkage in non-consanguineous Chinese arRP. This analysis indicates that the studied families are probably linked to the RP25 locus, a well defined arRP locus in other populations. The identification of another ethnic group linked to RP25 is highly suggestive that this represents a major locus for arRP.


Subject(s)
Retinitis Pigmentosa/genetics , Asian People/genetics , Base Sequence , China , Chromosome Mapping , Chromosomes, Human, Pair 6/genetics , Computational Biology , DNA Primers/genetics , Exons , Female , Genes, Recessive , Genetic Linkage , Haplotypes , Humans , Lod Score , Male , Microsatellite Repeats , Oligonucleotide Array Sequence Analysis , Pedigree , Polymorphism, Single Nucleotide
9.
Analyst ; 131(7): 785-7, 2006 Jul.
Article in English | MEDLINE | ID: mdl-16802022

ABSTRACT

A simple, direct and rapid analytical methodology for the detection of aflatoxin producing Aspergillus spp. strains based on the measurement of room temperature phosphorescence from aflatoxins is presented here.


Subject(s)
Aflatoxins/biosynthesis , Aspergillus/isolation & purification , Aspergillus/classification , Food Microbiology , Luminescent Measurements/methods , Mycological Typing Techniques/methods , Temperature
10.
Chem Commun (Camb) ; (25): 3224-6, 2005 Jul 07.
Article in English | MEDLINE | ID: mdl-15968379

ABSTRACT

A novel molecularly imprinted polymer (MIP) of high interest for room temperature phosphorescence (RTP) sensing systems is described; the synthesized MIP contains iodine as internal heavy atom in the polymeric structure and its applicability for RTP sensing of fluoranthene at microg L(-1) levels is demonstrated.


Subject(s)
Fluorenes/chemistry , Polymers/chemistry , Luminescence , Temperature
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