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1.
FEMS Microbiol Ecol ; 53(2): 305-16, 2005 Jul 01.
Article in English | MEDLINE | ID: mdl-16329950

ABSTRACT

Qualitative and quantitative changes of microbial communities in soil microcosms during bioremediation were determined throughout one year. The soil was contaminated with 0%, 2.5%, 5%, 10% (wt/wt) of petrochemical sludge containing polynuclear aromatic hydrocarbons. We analyzed the hydrocarbon concentration in the microcosms, the number of cultivable bacteria using CFU and most probable number assays, the community structure using denaturing gradient gel electrophoresis, and the metabolic activity of soil using dehydrogenase activity and substrate-induced respiration assays. After one year of treatment, the chemical analysis suggested that the hydrocarbon elimination process was over. The biological analysis, however, showed that the contaminated microcosms suffered under long-term disturbance. The number of heterotrophic bacteria that increased after sludge addition (up to 10(8)-10(9) cells ml(-1)) has not returned to the level of the control soil (2-6 x 10(7) cells ml(-1)). The community structure in the contaminated soils differed considerably from that in the control. The substrate-induced respiration of the contaminated soils was significantly lower (approximately 10-fold) and the dehydrogenase activity was significantly higher (20-40-fold) compared to the control. Changes in the community structure of soils depended on the amount of added sludge. The species, which were predominant in the sludge community, could not be detected in the contaminated soils.


Subject(s)
Biodegradation, Environmental , Petroleum , Soil Microbiology , Soil Pollutants/metabolism , Hydrocarbons/analysis , Oxidoreductases/metabolism , Population Dynamics , Refuse Disposal
2.
Science ; 306(5705): 2216-21, 2004 Dec 24.
Article in English | MEDLINE | ID: mdl-15618510

ABSTRACT

Diverse microbial communities and numerous energy-yielding activities occur in deeply buried sediments of the eastern Pacific Ocean. Distributions of metabolic activities often deviate from the standard model. Rates of activities, cell concentrations, and populations of cultured bacteria vary consistently from one subseafloor environment to another. Net rates of major activities principally rely on electron acceptors and electron donors from the photosynthetic surface world. At open-ocean sites, nitrate and oxygen are supplied to the deepest sedimentary communities through the underlying basaltic aquifer. In turn, these sedimentary communities may supply dissolved electron donors and nutrients to the underlying crustal biosphere.


Subject(s)
Bacteria/metabolism , Ecosystem , Geologic Sediments/microbiology , Bacteria/growth & development , Bacteria/isolation & purification , Carbon/metabolism , Colony Count, Microbial , Electron Transport , Iron/metabolism , Manganese/metabolism , Methane/metabolism , Nitrates/metabolism , Oxidants/metabolism , Oxidation-Reduction , Pacific Ocean , Peru , Photosynthesis , Seawater/chemistry , Sulfates/metabolism , Thermodynamics
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