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1.
Nat Commun ; 9(1): 4065, 2018 10 03.
Article in English | MEDLINE | ID: mdl-30283131

ABSTRACT

Mitochondrial protein synthesis requires charging mt-tRNAs with their cognate amino acids by mitochondrial aminoacyl-tRNA synthetases, with the exception of glutaminyl mt-tRNA (mt-tRNAGln). mt-tRNAGln is indirectly charged by a transamidation reaction involving the GatCAB aminoacyl-tRNA amidotransferase complex. Defects involving the mitochondrial protein synthesis machinery cause a broad spectrum of disorders, with often fatal outcome. Here, we describe nine patients from five families with genetic defects in a GatCAB complex subunit, including QRSL1, GATB, and GATC, each showing a lethal metabolic cardiomyopathy syndrome. Functional studies reveal combined respiratory chain enzyme deficiencies and mitochondrial dysfunction. Aminoacylation of mt-tRNAGln and mitochondrial protein translation are deficient in patients' fibroblasts cultured in the absence of glutamine but restore in high glutamine. Lentiviral rescue experiments and modeling in S. cerevisiae homologs confirm pathogenicity. Our study completes a decade of investigations on mitochondrial aminoacylation disorders, starting with DARS2 and ending with the GatCAB complex.


Subject(s)
Cardiomyopathies/enzymology , Cardiomyopathies/genetics , Mitochondrial Diseases/enzymology , Mitochondrial Diseases/genetics , Mutation/genetics , Nitrogenous Group Transferases/genetics , Protein Subunits/genetics , Amino Acid Sequence , Female , Fibroblasts/metabolism , Fibroblasts/pathology , Humans , Infant , Infant, Newborn , Lentivirus/metabolism , Male , Models, Molecular , Myocardium/pathology , Myocardium/ultrastructure , Nitrogenous Group Transferases/chemistry , Nitrogenous Group Transferases/metabolism , Oxidative Phosphorylation , Pedigree , Protein Biosynthesis , Protein Subunits/chemistry , Protein Subunits/metabolism , RNA, Transfer/metabolism , Saccharomyces cerevisiae/metabolism
2.
Hum Mol Genet ; 26(21): 4257-4266, 2017 11 01.
Article in English | MEDLINE | ID: mdl-28973171

ABSTRACT

Defects in nuclear-encoded proteins of the mitochondrial translation machinery cause early-onset and tissue-specific deficiency of one or more OXPHOS complexes. Here, we report a 7-year-old Italian boy with childhood-onset rapidly progressive encephalomyopathy and stroke-like episodes. Multiple OXPHOS defects and decreased mtDNA copy number (40%) were detected in muscle homogenate. Clinical features combined with low level of plasma citrulline were highly suggestive of mitochondrial encephalopathy, lactic acidosis and stroke-like episodes (MELAS) syndrome, however, the common m.3243 A > G mutation was excluded. Targeted exome sequencing of genes encoding the mitochondrial proteome identified a damaging mutation, c.567 G > A, affecting a highly conserved amino acid residue (p.Gly189Arg) of the MRM2 protein. MRM2 has never before been linked to a human disease and encodes an enzyme responsible for 2'-O-methyl modification at position U1369 in the human mitochondrial 16S rRNA. We generated a knockout yeast model for the orthologous gene that showed a defect in respiration and the reduction of the 2'-O-methyl modification at the equivalent position (U2791) in the yeast mitochondrial 21S rRNA. Complementation with the mrm2 allele carrying the equivalent yeast mutation failed to rescue the respiratory phenotype, which was instead completely rescued by expressing the wild-type allele. Our findings establish that defective MRM2 causes a MELAS-like phenotype, and suggests the genetic screening of the MRM2 gene in patients with a m.3243 A > G negative MELAS-like presentation.


Subject(s)
MELAS Syndrome/genetics , Methyltransferases/genetics , Methyltransferases/metabolism , Nuclear Proteins/genetics , Nuclear Proteins/metabolism , Amino Acid Sequence , Child , DNA, Mitochondrial/genetics , Humans , MELAS Syndrome/diagnosis , Male , Mitochondria/genetics , Mitochondrial Encephalomyopathies/genetics , Mitochondrial Encephalomyopathies/metabolism , Mutation , RNA, Ribosomal/genetics , RNA, Ribosomal/metabolism , RNA, Ribosomal, 16S/genetics , RNA, Ribosomal, 16S/metabolism , Saccharomyces cerevisiae/genetics
4.
Am J Hum Genet ; 99(4): 860-876, 2016 10 06.
Article in English | MEDLINE | ID: mdl-27693233

ABSTRACT

Mutations in SLC25A4 encoding the mitochondrial ADP/ATP carrier AAC1 are well-recognized causes of mitochondrial disease. Several heterozygous SLC25A4 mutations cause adult-onset autosomal-dominant progressive external ophthalmoplegia associated with multiple mitochondrial DNA deletions, whereas recessive SLC25A4 mutations cause childhood-onset mitochondrial myopathy and cardiomyopathy. Here, we describe the identification by whole-exome sequencing of seven probands harboring dominant, de novo SLC25A4 mutations. All affected individuals presented at birth, were ventilator dependent and, where tested, revealed severe combined mitochondrial respiratory chain deficiencies associated with a marked loss of mitochondrial DNA copy number in skeletal muscle. Strikingly, an identical c.239G>A (p.Arg80His) mutation was present in four of the seven subjects, and the other three case subjects harbored the same c.703C>G (p.Arg235Gly) mutation. Analysis of skeletal muscle revealed a marked decrease of AAC1 protein levels and loss of respiratory chain complexes containing mitochondrial DNA-encoded subunits. We show that both recombinant AAC1 mutant proteins are severely impaired in ADP/ATP transport, affecting most likely the substrate binding and mechanics of the carrier, respectively. This highly reduced capacity for transport probably affects mitochondrial DNA maintenance and in turn respiration, causing a severe energy crisis. The confirmation of the pathogenicity of these de novo SLC25A4 mutations highlights a third distinct clinical phenotype associated with mutation of this gene and demonstrates that early-onset mitochondrial disease can be caused by recurrent de novo mutations, which has significant implications for the application and analysis of whole-exome sequencing data in mitochondrial disease.


Subject(s)
Adenine Nucleotide Translocator 1/genetics , DNA Copy Number Variations/genetics , DNA, Mitochondrial/genetics , Genes, Dominant/genetics , Mitochondrial Diseases/genetics , Mutation , Adenosine Diphosphate/metabolism , Adenosine Triphosphate/metabolism , Age of Onset , Arylamine N-Acetyltransferase/genetics , Child , Child, Preschool , Electron Transport/genetics , Exome/genetics , Female , Humans , Infant , Infant, Newborn , Isoenzymes/genetics , Male , Mitochondrial Diseases/pathology , Muscle, Skeletal/metabolism
5.
Brain ; 139(Pt 3): 782-94, 2016 Mar.
Article in English | MEDLINE | ID: mdl-26912632

ABSTRACT

This study focused on the molecular characterization of patients with leukoencephalopathy associated with a specific biochemical defect of mitochondrial respiratory chain complex III, and explores the impact of a distinct magnetic resonance imaging pattern of leukoencephalopathy to detect biallelic mutations in LYRM7 in patients with biochemically unclassified leukoencephalopathy. 'Targeted resequencing' of a custom panel including genes coding for mitochondrial proteins was performed in patients with complex III deficiency without a molecular genetic diagnosis. Based on brain magnetic resonance imaging findings in these patients, we selected additional patients from a database of unclassified leukoencephalopathies who were scanned for mutations in LYRM7 by Sanger sequencing. Targeted sequencing revealed homozygous mutations in LYRM7, encoding mitochondrial LYR motif-containing protein 7, in four patients from three unrelated families who had a leukoencephalopathy and complex III deficiency. Two subjects harboured previously unreported variants predicted to be damaging, while two siblings carried an already reported pathogenic homozygous missense change. Sanger sequencing performed in the second cohort of patients revealed LYRM7 mutations in three additional patients, who were selected on the basis of the magnetic resonance imaging pattern. All patients had a consistent magnetic resonance imaging pattern of progressive signal abnormalities with multifocal small cavitations in the periventricular and deep cerebral white matter. Early motor development was delayed in half of the patients. All patients but one presented with subacute neurological deterioration in infancy or childhood, preceded by a febrile infection, and most patients had repeated episodes of subacute encephalopathy with motor regression, irritability and stupor or coma resulting in major handicap or death. LYRM7 protein was strongly reduced in available samples from patients; decreased complex III holocomplex was observed in fibroblasts from a patient carrying a splice site variant; functional studies in yeast confirmed the pathogenicity of two novel mutations. Mutations in LYRM7 were previously found in a single patient with a severe form of infantile onset encephalopathy. We provide new molecular, clinical, and neuroimaging data allowing us to characterize more accurately the molecular spectrum of LYRM7 mutations highlighting that a distinct and recognizable magnetic resonance imaging pattern is related to mutations in this gene. Inter- and intrafamilial variability exists and we observed one patient who was asymptomatic by the age of 6 years.


Subject(s)
Leukoencephalopathy, Progressive Multifocal/diagnosis , Leukoencephalopathy, Progressive Multifocal/genetics , Magnetic Resonance Imaging , Mitochondrial Proteins/genetics , Molecular Chaperones/genetics , Mutation/genetics , Adolescent , Amino Acid Sequence , Child , Child, Preschool , Female , Humans , Infant , Magnetic Resonance Imaging/methods , Male , Molecular Sequence Data , Saccharomyces cerevisiae
6.
EMBO Mol Med ; 8(3): 176-90, 2016 Mar 01.
Article in English | MEDLINE | ID: mdl-26697887

ABSTRACT

Mitochondrial dysfunction and altered proteostasis are central features of neurodegenerative diseases. The pitrilysin metallopeptidase 1 (PITRM1) is a mitochondrial matrix enzyme, which digests oligopeptides, including the mitochondrial targeting sequences that are cleaved from proteins imported across the inner mitochondrial membrane and the mitochondrial fraction of amyloid beta (Aß). We identified two siblings carrying a homozygous PITRM1 missense mutation (c.548G>A, p.Arg183Gln) associated with an autosomal recessive, slowly progressive syndrome characterised by mental retardation, spinocerebellar ataxia, cognitive decline and psychosis. The pathogenicity of the mutation was tested in vitro, in mutant fibroblasts and skeletal muscle, and in a yeast model. A Pitrm1(+/-) heterozygous mouse showed progressive ataxia associated with brain degenerative lesions, including accumulation of Aß-positive amyloid deposits. Our results show that PITRM1 is responsible for significant Aß degradation and that impairment of its activity results in Aß accumulation, thus providing a mechanistic demonstration of the mitochondrial involvement in amyloidotic neurodegeneration.


Subject(s)
Amyloid beta-Peptides/metabolism , Metalloendopeptidases/metabolism , Neurodegenerative Diseases/pathology , Neurodegenerative Diseases/physiopathology , Animals , Brain/diagnostic imaging , Brain/pathology , Disease Models, Animal , Histocytochemistry , Humans , Magnetic Resonance Imaging , Metalloendopeptidases/genetics , Mice , Models, Biological , Muscle, Skeletal/pathology , Mutant Proteins/genetics , Mutant Proteins/metabolism , Mutation, Missense , Neurodegenerative Diseases/genetics , Saccharomyces cerevisiae , Siblings
7.
Am J Hum Genet ; 97(2): 319-28, 2015 Aug 06.
Article in English | MEDLINE | ID: mdl-26189817

ABSTRACT

Deficiencies in respiratory-chain complexes lead to a variety of clinical phenotypes resulting from inadequate energy production by the mitochondrial oxidative phosphorylation system. Defective expression of mtDNA-encoded genes, caused by mutations in either the mitochondrial or nuclear genome, represents a rapidly growing group of human disorders. By whole-exome sequencing, we identified two unrelated individuals carrying compound heterozygous variants in TRMT5 (tRNA methyltransferase 5). TRMT5 encodes a mitochondrial protein with strong homology to members of the class I-like methyltransferase superfamily. Both affected individuals presented with lactic acidosis and evidence of multiple mitochondrial respiratory-chain-complex deficiencies in skeletal muscle, although the clinical presentation of the two affected subjects was remarkably different; one presented in childhood with failure to thrive and hypertrophic cardiomyopathy, and the other was an adult with a life-long history of exercise intolerance. Mutations in TRMT5 were associated with the hypomodification of a guanosine residue at position 37 (G37) of mitochondrial tRNA; this hypomodification was particularly prominent in skeletal muscle. Deficiency of the G37 modification was also detected in human cells subjected to TRMT5 RNAi. The pathogenicity of the detected variants was further confirmed in a heterologous yeast model and by the rescue of the molecular phenotype after re-expression of wild-type TRMT5 cDNA in cells derived from the affected individuals. Our study highlights the importance of post-transcriptional modification of mitochondrial tRNAs for faithful mitochondrial function.


Subject(s)
Mitochondrial Diseases/genetics , Models, Molecular , RNA Processing, Post-Transcriptional/genetics , RNA, Transfer/genetics , tRNA Methyltransferases/genetics , Amino Acid Sequence , Base Pairing , Base Sequence , Exome/genetics , Frameshift Mutation/genetics , Humans , Mitochondrial Diseases/pathology , Molecular Sequence Data , Pedigree , Polymerase Chain Reaction , Sequence Analysis, DNA , tRNA Methyltransferases/chemistry
8.
Nat Commun ; 5: 4287, 2014 Jul 03.
Article in English | MEDLINE | ID: mdl-24989451

ABSTRACT

The exosome is a multi-protein complex, required for the degradation of AU-rich element (ARE) containing messenger RNAs (mRNAs). EXOSC8 is an essential protein of the exosome core, as its depletion causes a severe growth defect in yeast. Here we show that homozygous missense mutations in EXOSC8 cause progressive and lethal neurological disease in 22 infants from three independent pedigrees. Affected individuals have cerebellar and corpus callosum hypoplasia, abnormal myelination of the central nervous system or spinal motor neuron disease. Experimental downregulation of EXOSC8 in human oligodendroglia cells and in zebrafish induce a specific increase in ARE mRNAs encoding myelin proteins, showing that the imbalanced supply of myelin proteins causes the disruption of myelin, and explaining the clinical presentation. These findings show the central role of the exosomal pathway in neurodegenerative disease.


Subject(s)
Agenesis of Corpus Callosum/genetics , Cerebellum/abnormalities , Exosome Multienzyme Ribonuclease Complex/genetics , Hereditary Central Nervous System Demyelinating Diseases/genetics , Nervous System Malformations/genetics , RNA-Binding Proteins/genetics , Spinal Muscular Atrophies of Childhood/genetics , Amino Acid Sequence , Animals , Cerebellum/pathology , Cerebral Cortex/pathology , Developmental Disabilities/genetics , Developmental Disabilities/pathology , Female , Fungal Proteins/metabolism , Gene Expression , Gene Knockdown Techniques , Hereditary Central Nervous System Demyelinating Diseases/pathology , Homozygote , Humans , Infant , Male , Molecular Sequence Data , Nervous System Malformations/pathology , Sequence Analysis, DNA , Syndrome , Zebrafish
9.
PLoS Genet ; 10(6): e1004424, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24901367

ABSTRACT

Identifying the genetic basis for mitochondrial diseases is technically challenging given the size of the mitochondrial proteome and the heterogeneity of disease presentations. Using next-generation exome sequencing, we identified in a patient with severe combined mitochondrial respiratory chain defects and corresponding perturbation in mitochondrial protein synthesis, a homozygous p.Arg323Gln mutation in TRIT1. This gene encodes human tRNA isopentenyltransferase, which is responsible for i6A37 modification of the anticodon loops of a small subset of cytosolic and mitochondrial tRNAs. Deficiency of i6A37 was previously shown in yeast to decrease translational efficiency and fidelity in a codon-specific manner. Modelling of the p.Arg323Gln mutation on the co-crystal structure of the homologous yeast isopentenyltransferase bound to a substrate tRNA, indicates that it is one of a series of adjacent basic side chains that interact with the tRNA backbone of the anticodon stem, somewhat removed from the catalytic center. We show that patient cells bearing the p.Arg323Gln TRIT1 mutation are severely deficient in i6A37 in both cytosolic and mitochondrial tRNAs. Complete complementation of the i6A37 deficiency of both cytosolic and mitochondrial tRNAs was achieved by transduction of patient fibroblasts with wild-type TRIT1. Moreover, we show that a previously-reported pathogenic m.7480A>G mt-tRNASer(UCN) mutation in the anticodon loop sequence A36A37A38 recognised by TRIT1 causes a loss of i6A37 modification. These data demonstrate that deficiencies of i6A37 tRNA modification should be considered a potential mechanism of human disease caused by both nuclear gene and mitochondrial DNA mutations while providing insight into the structure and function of TRIT1 in the modification of cytosolic and mitochondrial tRNAs.


Subject(s)
Alkyl and Aryl Transferases/genetics , Mitochondrial Diseases/genetics , Sulfurtransferases/genetics , Cells, Cultured , Cytochrome-c Oxidase Deficiency/genetics , Cytosol , DNA, Mitochondrial/genetics , Electron Transport/genetics , Electron Transport Complex IV/genetics , Female , Humans , Male , Mitochondria/genetics , Protein Biosynthesis/genetics , RNA/genetics , RNA, Mitochondrial , RNA, Transfer/genetics , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics , Schizosaccharomyces/enzymology , Schizosaccharomyces/genetics , Schizosaccharomyces pombe Proteins/genetics
10.
Neurology ; 82(23): 2063-71, 2014 Jun 10.
Article in English | MEDLINE | ID: mdl-24808023

ABSTRACT

OBJECTIVES: The study was focused on leukoencephalopathies of unknown cause in order to define a novel, homogeneous phenotype suggestive of a common genetic defect, based on clinical and MRI findings, and to identify the causal genetic defect shared by patients with this phenotype. METHODS: Independent next-generation exome-sequencing studies were performed in 2 unrelated patients with a leukoencephalopathy. MRI findings in these patients were compared with available MRIs in a database of unclassified leukoencephalopathies; 11 patients with similar MRI abnormalities were selected. Clinical and MRI findings were investigated. RESULTS: Next-generation sequencing revealed compound heterozygous mutations in AARS2 encoding mitochondrial alanyl-tRNA synthetase in both patients. Functional studies in yeast confirmed the pathogenicity of the mutations in one patient. Sanger sequencing revealed AARS2 mutations in 4 of the 11 selected patients. The 6 patients with AARS2 mutations had childhood- to adulthood-onset signs of neurologic deterioration consisting of ataxia, spasticity, and cognitive decline with features of frontal lobe dysfunction. MRIs showed a leukoencephalopathy with striking involvement of left-right connections, descending tracts, and cerebellar atrophy. All female patients had ovarian failure. None of the patients had signs of a cardiomyopathy. CONCLUSIONS: Mutations in AARS2 have been found in a severe form of infantile cardiomyopathy in 2 families. We present 6 patients with a new phenotype caused by AARS2 mutations, characterized by leukoencephalopathy and, in female patients, ovarian failure, indicating that the phenotypic spectrum associated with AARS2 variants is much wider than previously reported.


Subject(s)
Alanine-tRNA Ligase/genetics , Cognition Disorders/genetics , Leukoencephalopathies/genetics , Primary Ovarian Insufficiency/genetics , Adolescent , Adult , Ataxia/genetics , Ataxia/pathology , Ataxia/physiopathology , Atrophy/genetics , Atrophy/pathology , Cognition Disorders/pathology , Cognition Disorders/physiopathology , Exons/genetics , Female , Humans , Leukoencephalopathies/pathology , Leukoencephalopathies/physiopathology , Magnetic Resonance Imaging , Male , Muscle Spasticity/genetics , Muscle Spasticity/pathology , Muscle Spasticity/physiopathology , Mutation/genetics , Phenotype , Primary Ovarian Insufficiency/pathology , Primary Ovarian Insufficiency/physiopathology , Young Adult
11.
Hum Mutat ; 34(12): 1619-22, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24014394

ABSTRACT

Mutations in nuclear genes associated with defective complex III (cIII) of the mitochondrial respiratory chain are rare, having been found in only two cIII assembly factors and, as private changes in single families, three cIII structural subunits. Recently, human LYRM7/MZM1L, the ortholog of yeast MZM1, has been identified as a new assembly factor for cIII. In a baby patient with early onset, severe encephalopathy, lactic acidosis and profound, isolated cIII deficiency in skeletal muscle, we identified a disease-segregating homozygous mutation (c.73G>A) in LYRM7/MZM1L, predicting a drastic change in a highly conserved amino-acid residue (p.Asp25Asn). In a mzm1Δ yeast strain, the expression of a mzm1(D25N) mutant allele caused temperature-sensitive respiratory growth defect, decreased oxygen consumption, impaired maturation/stabilization of the Rieske Fe-S protein, and reduced complex III activity and amount. LYRM7/MZM1L is a novel disease gene, causing cIII-defective, early onset, severe mitochondrial encephalopathy.


Subject(s)
Acidosis, Lactic/genetics , Acidosis, Lactic/metabolism , Electron Transport Complex III/metabolism , Homozygote , Mitochondrial Encephalomyopathies/genetics , Mitochondrial Encephalomyopathies/metabolism , Mitochondrial Proteins/genetics , Molecular Chaperones/genetics , Mutation , Acidosis, Lactic/diagnosis , Amino Acid Sequence , Brain/pathology , DNA Mutational Analysis , Enzyme Activation , Female , Humans , Infant , Magnetic Resonance Imaging , Mitochondrial Encephalomyopathies/diagnosis , Mitochondrial Proteins/chemistry , Molecular Chaperones/chemistry , Molecular Sequence Data , Pedigree , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Sequence Alignment
12.
Hum Mutat ; 34(11): 1501-9, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23929671

ABSTRACT

We report three families presenting with hypertrophic cardiomyopathy, lactic acidosis, and multiple defects of mitochondrial respiratory chain (MRC) activities. By direct sequencing of the candidate gene MTO1, encoding the mitochondrial-tRNA modifier 1, or whole exome sequencing analysis, we identified novel missense mutations. All MTO1 mutations were predicted to be deleterious on MTO1 function. Their pathogenic role was experimentally validated in a recombinant yeast model, by assessing oxidative growth, respiratory activity, mitochondrial protein synthesis, and complex IV activity. In one case, we also demonstrated that expression of wt MTO1 could rescue the respiratory defect in mutant fibroblasts. The severity of the yeast respiratory phenotypes partly correlated with the different clinical presentations observed in MTO1 mutant patients, although the clinical outcome was highly variable in patients with the same mutation and seemed also to depend on timely start of pharmacological treatment, centered on the control of lactic acidosis by dichloroacetate. Our results indicate that MTO1 mutations are commonly associated with a presentation of hypertrophic cardiomyopathy, lactic acidosis, and MRC deficiency, and that ad hoc recombinant yeast models represent a useful system to test the pathogenic potential of uncommon variants, and provide insight into their effects on the expression of a biochemical phenotype.


Subject(s)
Acidosis, Lactic/genetics , Cardiomyopathy, Hypertrophic/genetics , Carrier Proteins/genetics , Electron Transport Chain Complex Proteins/deficiency , Mutation , Yeasts/genetics , Adolescent , Age of Onset , Amino Acid Sequence , Brain/pathology , Carrier Proteins/chemistry , Carrier Proteins/metabolism , Child , Child, Preschool , DNA Mutational Analysis , Female , Humans , Infant , Infant, Newborn , Magnetic Resonance Imaging , Male , Models, Molecular , Molecular Sequence Data , Pedigree , Protein Conformation , RNA-Binding Proteins , Sequence Alignment , Yeasts/metabolism , Young Adult
13.
Am J Hum Genet ; 93(2): 211-23, 2013 Aug 08.
Article in English | MEDLINE | ID: mdl-23849775

ABSTRACT

The human mitochondrial genome encodes RNA components of its own translational machinery to produce the 13 mitochondrial-encoded subunits of the respiratory chain. Nuclear-encoded gene products are essential for all processes within the organelle, including RNA processing. Transcription of the mitochondrial genome generates large polycistronic transcripts punctuated by the 22 mitochondrial (mt) tRNAs that are conventionally cleaved by the RNase P-complex and the RNase Z activity of ELAC2 at 5' and 3' ends, respectively. We report the identification of mutations in ELAC2 in five individuals with infantile hypertrophic cardiomyopathy and complex I deficiency. We observed accumulated mtRNA precursors in affected individuals muscle and fibroblasts. Although mature mt-tRNA, mt-mRNA, and mt-rRNA levels were not decreased in fibroblasts, the processing defect was associated with impaired mitochondrial translation. Complementation experiments in mutant cell lines restored RNA processing and a yeast model provided additional evidence for the disease-causal role of defective ELAC2, thereby linking mtRNA processing to human disease.


Subject(s)
Cardiomyopathy, Hypertrophic/genetics , Mitochondria/genetics , Mutation , Neoplasm Proteins/genetics , RNA Processing, Post-Transcriptional , RNA, Messenger/genetics , Amino Acid Sequence , Cardiomyopathy, Hypertrophic/metabolism , Cardiomyopathy, Hypertrophic/pathology , Cell Nucleus/genetics , Cell Nucleus/metabolism , Electron Transport/genetics , Endoribonucleases/genetics , Endoribonucleases/metabolism , Female , Fibroblasts/metabolism , Fibroblasts/pathology , Genetic Complementation Test , Humans , Infant , Male , Mitochondria/metabolism , Molecular Sequence Data , Muscles/metabolism , Muscles/pathology , Neoplasm Proteins/metabolism , Pedigree , RNA, Messenger/metabolism , RNA, Mitochondrial , RNA, Ribosomal/genetics , RNA, Ribosomal/metabolism , RNA, Transfer/genetics , RNA, Transfer/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism
14.
Hum Mol Genet ; 22(4): 804-15, 2013 Feb 15.
Article in English | MEDLINE | ID: mdl-23175444

ABSTRACT

SDH genes, encoding succinate dehydrogenase, act as tumour suppressor genes, linking mitochondrial dysfunction with tumourigenesis. Heterozygous germline mutations in SDHA, SDHB, SDHC, SDHD and in the assembly factor encoding gene SDHAF2 have all been shown to predispose to heritable endocrine neoplasias such as pheochromocytomas (PHEO) and paragangliomas (PGLs) called 'PHEO-PGL syndrome'. SDH genes mutations, in addition to deletions or truncations which are most likely pathogenic, often include missense substitutions which can be of uncertain significance. Unclassified missense substitutions may be difficult to interpret unless the cause-effect link between mutation and the disease is established by functional and in silico studies or by the familial segregation with the phenotype. Using the yeast model, here, we report functional investigations on several missense SDH mutations found in patients affected by pheochromocytomas or paragangliomas. The aim of this study was to evaluate whether and to which extent the yeast model may be useful for establishing the pathological significance of missense SDH mutations in humans. The results of our study demonstrate that the yeast is a good functional model to validate the pathogenic significance of SDHB missense mutations while, for missense mutations in SDHC and SDHD genes, the model can be informative only when the variation involves a conserved residue in a conserved domain.


Subject(s)
Membrane Proteins/genetics , Mutation, Missense , Paraganglioma/genetics , Pheochromocytoma/genetics , Succinate Dehydrogenase/genetics , Genetic Complementation Test , Humans , Oxidative Phosphorylation , Oxidative Stress , Paraganglioma/enzymology , Phenotype , Pheochromocytoma/enzymology , Saccharomyces cerevisiae , Saccharomyces cerevisiae Proteins/genetics , Syndrome
15.
EMBO Mol Med ; 5(2): 280-93, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23239471

ABSTRACT

Mitochondrial-dependent (intrinsic) programmed cell death (PCD) is an essential homoeostatic mechanism that selects bioenergetically proficient cells suitable for tissue/organ development. However, the link between mitochondrial dysfunction, intrinsic apoptosis and developmental anomalies has not been demonstrated to date. Now we provide the evidence that non-canonical mitochondrial dependent apoptosis explains the phenotype of microphthalmia with linear skin lesions (MLS), an X-linked developmental disorder caused by mutations in the holocytochrome c-type synthase (HCCS)gene [corrected]. By taking advantage of a medaka model that recapitulates the MLS phenotype we demonstrate that downregulation of hccs, an essential player of the mitochondrial respiratory chain (MRC), causes increased cell death via an apoptosome-independent caspase-9 activation in brain and eyes. We also show that the unconventional activation of caspase-9 occurs in the mitochondria and is triggered by MRC impairment and overproduction of reactive oxygen species (ROS). We thus propose that HCCS plays a key role in central nervous system (CNS) development by modulating a novel non-canonical start-up of cell death and provide the first experimental evidence for a mechanistic link between mitochondrial dysfunction, intrinsic apoptosis and developmental disorders.


Subject(s)
Apoptosis , Brain/cytology , Eye/cytology , Fish Proteins/metabolism , Lyases/metabolism , Microphthalmos/enzymology , Oryzias/genetics , Animals , Brain/enzymology , Caspase 9/genetics , Caspase 9/metabolism , Cytochromes c/metabolism , Disease Models, Animal , Eye/enzymology , Female , Fish Proteins/genetics , Gene Knockdown Techniques , Humans , Lyases/genetics , Male , Microphthalmos/genetics , Microphthalmos/physiopathology , Oryzias/metabolism
16.
J Med Genet ; 49(9): 569-77, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22972948

ABSTRACT

BACKGROUND: Isolated complex II deficiency is a rare form of mitochondrial disease, accounting for approximately 2% of all respiratory chain deficiency diagnoses. The succinate dehydrogenase (SDH) genes (SDHA, SDHB, SDHC and SDHD) are autosomally-encoded and transcribe the conjugated heterotetramers of complex II via the action of two known assembly factors (SDHAF1 and SDHAF2). Only a handful of reports describe inherited SDH gene defects as a cause of paediatric mitochondrial disease, involving either SDHA (Leigh syndrome, cardiomyopathy) or SDHAF1 (infantile leukoencephalopathy). However, all four SDH genes, together with SDHAF2, have known tumour suppressor functions, with numerous germline and somatic mutations reported in association with hereditary cancer syndromes, including paraganglioma and pheochromocytoma. METHODS AND RESULTS: Here, we report the clinical and molecular investigations of two patients with histochemical and biochemical evidence of a severe, isolated complex II deficiency due to novel SDH gene mutations; the first patient presented with cardiomyopathy and leukodystrophy due to compound heterozygous p.Thr508Ile and p.Ser509Leu SDHA mutations, while the second patient presented with hypotonia and leukodystrophy with elevated brain succinate demonstrated by MR spectroscopy due to a novel, homozygous p.Asp48Val SDHB mutation. Western blotting and BN-PAGE studies confirmed decreased steady-state levels of the relevant SDH subunits and impairment of complex II assembly. Evidence from yeast complementation studies provided additional support for pathogenicity of the SDHB mutation. CONCLUSIONS: Our report represents the first example of SDHB mutation as a cause of inherited mitochondrial respiratory chain disease and extends the SDHA mutation spectrum in patients with isolated complex II deficiency.


Subject(s)
Electron Transport Complex II/deficiency , Genes, Recessive/genetics , Germ-Line Mutation/genetics , Leukoencephalopathies/genetics , Metabolism, Inborn Errors/genetics , Mitochondrial Diseases/genetics , Succinate Dehydrogenase/genetics , Amino Acid Sequence , Base Sequence , Blotting, Western , Brain/pathology , Child, Preschool , Electron Transport , Electron Transport Complex II/chemistry , Electron Transport Complex II/genetics , Female , Genetic Complementation Test , Humans , Infant , Infant, Newborn , Leukoencephalopathies/complications , Magnetic Resonance Imaging , Male , Metabolism, Inborn Errors/complications , Metabolism, Inborn Errors/enzymology , Mitochondrial Diseases/complications , Mitochondrial Diseases/enzymology , Molecular Sequence Data , Muscle, Skeletal/pathology , Mutation/genetics , Saccharomyces cerevisiae/metabolism , Succinate Dehydrogenase/chemistry
17.
J Aging Res ; 2012: 946586, 2012.
Article in English | MEDLINE | ID: mdl-22675632

ABSTRACT

Oxidative damage, mitochondrial dysfunction, genomic instability, and telomere shortening represent all molecular processes proposed as causal factors in aging. Lifespan can be increased by metabolism through an influence on such processes. Glucose reduction extends chronological lifespan (CLS) of Saccharomyces cerevisiae through metabolic adaptation to respiration. To answer the question if the reduced CLS could be ascribed to glucose per se or to glucose repression of respiratory enzymes, we used the Kluyveromyces lactis yeast, where glucose repression does not affect the respiratory function. We identified the unique hexokinase, encoded by RAG5 gene, as an important player in influencing yeast lifespan by modulating mitochondrial functionality and the level of the mitochondrial chaperonin Hsp60. In this context, this hexokinase might have a regulatory role in the influence of CLS, shedding new light on the complex regulation played by hexokinases.

18.
Am J Hum Genet ; 90(6): 1079-87, 2012 Jun 08.
Article in English | MEDLINE | ID: mdl-22608499

ABSTRACT

Dysfunction of mitochondrial respiration is an increasingly recognized cause of isolated hypertrophic cardiomyopathy. To gain insight into the genetic origin of this condition, we used next-generation exome sequencing to identify mutations in MTO1, which encodes mitochondrial translation optimization 1. Two affected siblings carried a maternal c.1858dup (p.Arg620Lysfs(∗)8) frameshift and a paternal c.1282G>A (p.Ala428Thr) missense mutation. A third unrelated individual was homozygous for the latter change. In both humans and yeast, MTO1 increases the accuracy and efficiency of mtDNA translation by catalyzing the 5-carboxymethylaminomethylation of the wobble uridine base in three mitochondrial tRNAs (mt-tRNAs). Accordingly, mutant muscle and fibroblasts showed variably combined reduction in mtDNA-dependent respiratory chain activities. Reduced respiration in mutant cells was corrected by expressing a wild-type MTO1 cDNA. Conversely, defective respiration of a yeast mto1Δ strain failed to be corrected by an Mto1(Pro622∗) variant, equivalent to human MTO1(Arg620Lysfs∗8), whereas incomplete correction was achieved by an Mto1(Ala431Thr) variant, corresponding to human MTO1(Ala428Thr). The respiratory yeast phenotype was dramatically worsened in stress conditions and in the presence of a paromomycin-resistant (P(R)) mitochondrial rRNA mutation. Lastly, in vivo mtDNA translation was impaired in the mutant yeast strains.


Subject(s)
Acidosis, Lactic/genetics , Cardiomyopathy, Hypertrophic/genetics , Carrier Proteins/genetics , DNA Mutational Analysis , Mitochondria/metabolism , RNA, Transfer/genetics , Base Sequence , DNA, Mitochondrial/genetics , Fibroblasts/metabolism , Homozygote , Humans , Molecular Sequence Data , Mothers , Mutation , Mutation, Missense , Nucleic Acid Conformation , Oxidative Phosphorylation , Paromomycin/pharmacology , Phenotype , Phosphorylation , RNA, Ribosomal/metabolism , RNA-Binding Proteins , Respiration , Saccharomyces cerevisiae/genetics
19.
FEMS Yeast Res ; 10(8): 1006-22, 2010 Dec.
Article in English | MEDLINE | ID: mdl-20946356

ABSTRACT

Nowadays, mitochondrial diseases are recognized and studied with much attention and they cannot be considered anymore as 'rare diseases'. Yeast has been an instrumental organism to understand the genetic and molecular aspects of the many roles of mitochondria within the cells. Thanks to the general conservation of mitochondrial genes and pathways between human and yeast, it can also be used to model some diseases. In this review, we focus on the most recent topics, exemplifying those for which yeast models have been especially valuable.


Subject(s)
Mitochondrial Diseases/pathology , Mitochondrial Diseases/physiopathology , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/physiology , Conserved Sequence , Humans , Mitochondria/genetics , Models, Biological
20.
Nat Genet ; 41(6): 654-6, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19465911

ABSTRACT

We report mutations in SDHAF1, encoding a new LYR-motif protein, in infantile leukoencephalopathy with defective succinate dehydrogenase (SDH, complex II). Disruption of the yeast homolog or expression of variants corresponding to human mutants caused SDH deficiency and failure of OXPHOS-dependent growth, whereas SDH activity and amount were restored in mutant fibroblasts proportionally with re-expression of the wild-type gene. SDHAF1 is the first bona fide SDH assembly factor reported in any organism.


Subject(s)
Leukoencephalopathies/genetics , Mutation , Proteins/genetics , Succinate Dehydrogenase/genetics , Genetic Complementation Test , Humans , Infant , Iron-Sulfur Proteins/genetics , Leukoencephalopathies/enzymology , Protein Subunits/genetics , Sequence Deletion , Yeasts/enzymology , Yeasts/genetics
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