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1.
PeerJ ; 12: e17804, 2024.
Article in English | MEDLINE | ID: mdl-39346057

ABSTRACT

Oat (Avena sativa L.) is an annual grass that has a high nutritional value and therapeutic benefits. ß-glucan is one of the most important nutrients in oats. In this study, we investigated two oat varieties with significant differences in ß-glucan content (high ß-glucan oat varieties BY and low ß-glucan content oat variety DY) during different filling stages. We also studied the transcriptome sequencing of seeds at different filling stages. ß-glucan accumulation was highest at days 6-16 in the filling stage. Differentially expressed genes (DEGs) were selected from the dataset of transcriptome sequencing. Among them, three metabolic pathways were closely related to the biosynthesis of ß-glucan by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, including xyloglucan:xyloglucosyl transferase activity, starch and sucrose metabolism, and photosynthesis. By analyzing the expression patterns of DEGs, we identified one CslF2 gene and 32 transcription factors. Five modules were thought to be positively correlated with ß-glucan accumulation by weighted gene co-expression network analysis (WGCNA). Moreover, the expression levels of candidate genes obtained from the transcriptome sequencing were further validated by quantitative real-time PCR (RT-qPCR) analysis. Our study provides a novel way to identify the regulatory mechanism of ß-glucan synthesis and accumulation in oat seeds and offers a possible pathway for the genetic engineering of oat breeding for higher-quality seeds.


Subject(s)
Avena , Gene Expression Regulation, Plant , Seeds , Transcriptome , beta-Glucans , Avena/genetics , Avena/metabolism , Avena/growth & development , Seeds/genetics , Seeds/metabolism , Seeds/growth & development , beta-Glucans/metabolism , Transcriptome/genetics , Gene Expression Profiling/methods , RNA-Seq , Sequence Analysis, RNA/methods , Plant Proteins/genetics , Plant Proteins/metabolism
2.
Zootaxa ; 5418(1): 83-88, 2024 Feb 27.
Article in English | MEDLINE | ID: mdl-38480369

ABSTRACT

The gryllacridid genus Woznessenskia Gorochov, 2002 comprises 13 extant species from Asia, with 8 species reported from China and 5 species reported from Vietnam. A new species from Xizang, China, Woznessenskia lianhua sp. nov., is reported in this paper.


Subject(s)
Orthoptera , Animals , Animal Distribution , Animal Structures , Body Size , Organ Size , China
3.
Zookeys ; 1193: 145-160, 2024.
Article in English | MEDLINE | ID: mdl-38487668

ABSTRACT

The genus Svistella Gorochov, 1987 includes 10 species from Asia, with nine documented in China. In this study, a new species, Svistellayayun He, sp. nov., is described from Xizang, China. Morphologically, it resembles S.rufonotata (Chopard, 1932) but can be distinguished by a smaller inner tympanum, dark-brown setae on the 5th segment of the maxillary palp, and a rounded apex on the ectoparamere. To validate our morphological inferences and support the description of S.yayunsp. nov. as a new species, we performed a PCA based on bioacoustics parameters and molecular analysis. All Svistella species documented in China are distinguished by integrating their songs and DNA barcoding.

5.
Neurochem Res ; 48(12): 3610-3624, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37561259

ABSTRACT

Intestinal microbiota was connected to Parkinson's Disease (PD) pathology. The ancient Chinese medication for PD is Compound Dihuang Granule (CDG), and we found a neuroprotective function in treating the constipation of PD patients. Nevertheless, the mechanism of action still needs to be clarified. We predicted the probable targets of CDG against PD through Traditional Chinese medicine (TCM) network pharmacology and verified the analysis through animal experiments in vivo. The protein-protein interaction (PPI) network analysis screened PD-related genes, including Toll-like receptor 4(TLR4), TANK-binding kinase 1(TBK1), Nuclear Factor- Kappa B (NF-κB), and Tumor necrosis factor (TNF). Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses proved that the NF-κB and toll-like receptor signaling pathways serve a key function in CDG therapy of PD. Molecular docking analysis demonstrated that CDG strongly connected to TLR4/NF-κB. Experiments findings indicated that CDG improved the damage of dopaminergic neurons and gut microbial dysbiosis, ameliorated motor impairments, and suppressed the PD-associated inflammation and oxidative stress in mice induced by 1-methyl-4-phenyl-1,2,3,6-tetrahy dropyridine (MPTP). CDG suppressed the inflammatory proteins in the colon and protected the intestinal barrier. Overall, CDG improved gut microbial in PD by blocking the pathway of TLR4/NF-κB.


Subject(s)
Gastrointestinal Microbiome , Parkinson Disease , Humans , Mice , Animals , Parkinson Disease/metabolism , NF-kappa B/metabolism , Gastrointestinal Microbiome/physiology , Toll-Like Receptor 4/metabolism , Molecular Docking Simulation , Microglia/metabolism , Mice, Inbred C57BL , Disease Models, Animal
6.
Zootaxa ; 5296(1): 89-95, 2023 May 25.
Article in English | MEDLINE | ID: mdl-37518453

ABSTRACT

The genus Phyllotrella Gorochov, 1988 presently comprises four described species, P. planidorsalis Gorochov, 1988, P. fumingi Sun & Liu, 2019, P. hainanensis Sun & Liu, 2019 and P. transversa Sun & Liu, 2019. In this study, the results of this genus are based on molecular and morphological features. The molecular result shows that the genetic distance among these individuals from different areas was 0.767%-1.386%. Thus, we consider them as same species. However, based on the similarities and differences of their male genitalia, we suggest treat these species as two subspecies P. planidorsalis planidorsalis (= P. hainanensis syn. nov. and P. transversa syn. nov.) and P. planidorsalis fumingi stat. nov.


Subject(s)
Gryllidae , Orthoptera , Male , Animals , Animal Distribution , Body Size , Organ Size , Animal Structures/anatomy & histology
7.
Zootaxa ; 5311(1): 48-64, 2023 Jun 28.
Article in English | MEDLINE | ID: mdl-37518656

ABSTRACT

We report five new Myanmar amber specimens attributable to "Mole Cricket" †Pherodactylus rectanguli n. comb., hitherto regarded as a Mole Cricket (Orthoptera: Grylloptalpidae). The new material includes two adult males, two adult females, and one nymph. The specimens are redescribed, and additional new characters are provided for their delimitation and corresponding species identification. We carry out a comparison between these new specimens with other taxa of mole crickets from Myanmar amber and extant true crickets. The result indicates that some species merely represent different nymphal development stages or adults of †Pherodactylus rectanguli n. comb., however, they were misidentified as different species. We also treated genera †Tresdigitus n. syn. and †Chunxiania n. syn. as synonyms of genus †Pherodactylus Poinar, Su & Brown, 2020, and treat †Tresdigitus gracilis Jiang, Xu, Jarzembowski & Xiao, 2022 n. syn. and †Chunxiania fania n. syn. as synonyms of †Pherodactylus rectanguli n. comb. †Burmagryllotalpa longa is valid, because its shape of the pronotum curved without lateral carinae. The morphological convergences and specializations of subterranean dwelling species are discussed. The robust fore tibia and long apical spurs of †P. micromorphus, †P. rectanguli n. comb. and †B. longa are insufficient evidence for an assignment to the family Gryllotalpidae. Instead, we suggest place them into the subfamily Gryllinae (Gryllidae), tribe Sclerogryllini, and group them into their own subtribe Pherodactylina n. subtr.. A key to the identification of recent and fossil Sclerogryllini is also provided. Their taxonomy and morphology are discussed.


Subject(s)
Gryllidae , Orthoptera , Female , Male , Animals , Amber , Fossils , Myanmar , Nymph
8.
PLoS One ; 18(4): e0284124, 2023.
Article in English | MEDLINE | ID: mdl-37036877

ABSTRACT

Gryllus bimaculatus is an emerging model organism in various fields of biology such as behavior, neurology, physiology and genetics. Recently, application of reverse genetics provides an opportunity of understanding the functional genomics and manipulating gene regulation networks with specific physiological response in G. bimaculatus. By using CRISPR/Cas9 system in G. bimaculatus, we present an efficient knockdown of Tyrosine hydroxylase (TH) and yellow-y, which are involved in insect melanin and catecholamine-biosynthesis pathway. As an enzyme catalyzing the conversion of tyrosine to 3,4-dihydroxyphenylalanine, TH confines the first step reaction in the pathway. Yellow protein (dopachrome conversion enzyme, DCE) is also involved in the melanin biosynthetic pathway. The regulation system and molecular mechanism of melanin biogenesis in the pigmentation and their physiological functions in G. bimaculatus hasn't been well defined by far for lacking of in vivo models. Deletion and insertion of nucleotides in target sites of both TH and Yellow are detected in both F0 individuals and the inheritable F1 progenies. We confirm that TH and yellow-y are down-regulated in mutants by quantitative real-time PCR analysis. Compared with the control group, mutations of TH and yellow-y genes result in defects in pigmentation. Most F0 nymphs with mutations of TH gene die by the first instar, and the only adult had significant defects in the wings and legs. However, we could not get any homozygotes of TH mutants for all the F2 die by the first instar. Therefore, TH gene is very important for the growth and development of G. bimaculatus. When the yellow-y gene is knocked out, 71.43% of G. bimaculatus are light brown, with a slight mosaic on the abdomen. The yellow-y gene can be inherited stably through hybridization experiment with no obvious phenotype except lighter cuticular color. The present loss of function study indicates the essential roles of TH and yellow in pigmentation, and TH possesses profound and extensive effects of dopamine synthesis in embryonic development in G. bimaculatus.


Subject(s)
Melanins , Tyrosine 3-Monooxygenase , Animals , CRISPR-Cas Systems/genetics , Genomics , Melanins/genetics , Melanins/metabolism , Mutation , Tyrosine 3-Monooxygenase/genetics , Tyrosine 3-Monooxygenase/metabolism , Gryllidae
11.
Zootaxa ; 5343(3): 281-295, 2023 Sep 08.
Article in English | MEDLINE | ID: mdl-38221375

ABSTRACT

The genus Diestramima comprises 41 species from Asia with 31 species distributed in China. In this study, we reconstruct the phylogeny tree of Diestramima species by maximum likelihood and Bayesian inference based on three mitochondrial genes (COI, 12S and 16S). The result indicates that the phylogenetic results are coherent with that based on five molecular markers (COI, 12S, 16S, 18S and 28S). Moreover, two new species, D. pingmengensis sp. nov. He & Zong and D. gulinjingensis. sp. nov. Zong & He are described. Their validities are also supported by morphological features. Furthermore, D. sichuanensis Zhu & Shi, 2022 is treated as a junior synonym of D. guangxiensis Qin, Wang, Liu & Li, 2016 based on both morphological and molecular features.


Subject(s)
Orthoptera , Male , Animals , Orthoptera/genetics , Phylogeny , Bayes Theorem , Animal Distribution , Animal Structures , Body Size , Organ Size , China
12.
Zootaxa ; 5162(4): 397-409, 2022 Jul 08.
Article in English | MEDLINE | ID: mdl-36095500

ABSTRACT

To date, only two whip spider species have been recorded in China. We describe a new species, Sarax sinensis sp. nov., from Fujian, China. This species is morphologically similar to S. ioanniticus (Kritscher, 1959), S. israelensis (Miranda et al., 2016), and S. seychellarum (Kraepelin, 1898), but can be distinguished by the combination of the following characters: 35 segments in leg I tarsus, eight teeth on cheliceral claw, and four dorsal and ventral spines respectively on pedipalp femur. To examine the evolutionary history of S. sinensis sp. nov., we sequenced 12S, 16S, and COI gene regions of our specimens and inferred its phylogenetic position. The inferred phylogenetic trees placed the new species within Sarax, with its closest relative being distributed across the western Asia. The type specimens are deposited in the Museum of Biology, East China Normal University (ECNU).


Subject(s)
Arachnida , Spiders , Animal Distribution , Animals , Body Size , China , Humans , Organ Size , Phylogeny , Spiders/genetics
13.
Zootaxa ; 5125(5): 583-588, 2022 Apr 13.
Article in English | MEDLINE | ID: mdl-36101194

ABSTRACT

There are hundreds of filiform mechanosensory hairs on the cricket cercus, however, such sensory hairs have never been reported on cricket foretiba. In this study, we collected a new species from China, which possesses two long filiform hairs on foretibia. Combined with its burrowing habit, these hairs mainly contribute to detecting ground vibration. We describe a new genus for this new species Fodigryllus bisetus gen. et sp. nov. The type specimens are deposited in the Museum of Biology, East China Normal University (ECNU).


Subject(s)
Gryllidae , Animal Distribution , Animal Structures , Animals , Body Size , Humans , Organ Size
14.
Zootaxa ; 5093(1): 94-100, 2022 Jan 25.
Article in English | MEDLINE | ID: mdl-35390814

ABSTRACT

Phonarellus Gorochov, 1983 is comprised of 11 extant species. We describe a new species, Phonarellus (Phonarellus) zebripes He sp. nov. from Yunnan province, China. It is different from other Phonarellus species in possessing black and white stripes on the hind femora. The type specimens are deposited in Museum of Biology, East China Normal University (ECNU).


Subject(s)
Gryllidae , Orthoptera , Animal Distribution , Animal Structures , Animals , Body Size , China , Humans , Male , Organ Size
15.
Zootaxa ; 5092(1): 97-115, 2022 Jan 18.
Article in English | MEDLINE | ID: mdl-35391219

ABSTRACT

Hemigyrus was established by Brunner von Wattenwyl in 1893. In this study, we collected samples from Chongqing, Guangxi, Hainan, Sichuan, Tibet and Yunnan of China, and reconstructed phylogenetic tree based on COI gene. The results supported the classification of dividing this genus into two subgenera: Tomomima and Hemigyrus. With larger size and evidently branched phylogenetic position, a new subspecies H. (T.) spinosus robustus subsp. nov. Xie, Wang He is described here. H. (H.) acutifolius is firstly reported from China. Males of H. (H.) amplus and H. (H.) acutifolius, females of H. (H.) minor are described for the first time. All materials were deposited in Biological History Museum of East China Normal University (ECNU) and the Shanghai Entomological Museum, Chinese Academy of Sciences (SEM).


Subject(s)
Orthoptera , Animal Distribution , Animal Structures , Animals , Body Size , China , Female , Humans , Male , Organ Size , Orthoptera/genetics , Phylogeny
16.
Zootaxa ; 5115(2): 210-220, 2022 Mar 14.
Article in English | MEDLINE | ID: mdl-35391372

ABSTRACT

We provide a key to mute Trigonidiinae species from China, and provide morphological features of some nondescript species in brown color. We established a new genus, Zilingxi He gen. nov. with two new species Z. danmai He sp. nov. and Z. dian He sp. nov. from China. The new genus possesses a black line above clypeus; pseudepiphallic paramere of male genitalia possessing 23 branches; ovipositor shorter than other genera. Two new species are very similar in morphology, but different in the color pattern in frontal rostrum, and the shape of male genitalia. The type specimens are deposited in Museum of Biology, East China Normal University (ECNU).


Subject(s)
Gryllidae , Orthoptera , Animal Distribution , Animal Structures , Animals , Body Size , China , Humans , Male , Organ Size
17.
Metab Brain Dis ; 37(4): 1057-1070, 2022 04.
Article in English | MEDLINE | ID: mdl-35230626

ABSTRACT

Paeoniflorin (PF) has numerous benefits, including anti-inflammatory and anti-apoptosis effects. However, it is not clear if it has neuroprotective effects against cognitive impairment (CI) in Parkinson's disease (PD). Through network pharmacology, we identified probable targets as well as signal pathways through which PF might affect CI in PD. Then, we experimentally validated our findings. The core genes of the protein-protein interactions (PPI) network include MAPK8 (JNK), TP53, CASP3 (caspase-3), postsynaptic density protein-95 (PSD-95) and synaptophysin (SYN). Pathway enrichment analysis revealed that genes involved in apoptosis and mitogen-activated protein kinase (MAPK) signaling were significantly enriched. Because JNK is a key mediator of p53-induced apoptosis, we wondered if JNK/p53 pathway influences the effects of PF against apoptosis in mouse model of PD. Molecular docking analysis showed that PF had good affinity for JNK/p53. The results of the experiments indicated that PF ameliorated behavioral impairments and upregulated the expression of the dopamine (DA) neurons, suppressed cell apoptosis in substantia nigra pars compacta (SNpc) of PD. Additionally, PF improved 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP)-induced neuronal injury by inhibiting apoptosis in hippocampal neurons of the CA1 and CA3, and upregulating PSD-95 as well as SYN protein levels. Similar protective effects were observed upon JNK/p53 pathway inhibition using SP600125. Overall, PF improved CI in PD by inhibiting JNK/p53 pathway.


Subject(s)
Cognitive Dysfunction , Parkinson Disease , Animals , Cognitive Dysfunction/drug therapy , Dopaminergic Neurons , Glucosides , Mice , Molecular Docking Simulation , Monoterpenes , Parkinson Disease/drug therapy , Signal Transduction , Tumor Suppressor Protein p53
18.
Zootaxa ; 5188(6): 544-558, 2022 Sep 22.
Article in English | MEDLINE | ID: mdl-37044761

ABSTRACT

A new species of Tiger Gecko in the genus Goniurosaurus is described from Guangdong, China. This new species, Goniurosaurus wangshu sp. nov. is the fifth species of Goniurosaurus found in karst topography of Guangdong. It is distinguished morphologically from congeners in this region by the combination of thirteen precloacal pores in male; dorsal ground color of head, body, and limbs in adults yellow; and iris orange. To validate our morphological inferences and support the description of Goniurosaurus wangshu sp. nov. as a new species, we sequenced 16S, CMOS, cytb, and RAG1 gene regions and performed molecular phylogenetic analyses. Phylogenetic analysis places the new species within the G. yingdeensis group and highlights the evolutionary distinction between this new species and other described congeners.


Subject(s)
Lizards , Animals , Male , Animal Structures/anatomy & histology , Biological Evolution , China , Lizards/anatomy & histology , Lizards/classification , Lizards/genetics , Phylogeny , Species Specificity
19.
Zootaxa ; 4999(4): 356-362, 2021 Jul 13.
Article in English | MEDLINE | ID: mdl-34810478

ABSTRACT

A new species, Schizodactylus jimo He sp. nov., is described from Yunnan, China. The Schizodactylidae is recorded from China for the first time. The new species is similar to S. salweenensis, but different based on the shape of epiproct and other characters. The type specimens are deposited in the Museum of Biology, East China Normal University (ECNU).


Subject(s)
Gryllidae , Orthoptera , Animal Distribution , Animal Structures , Animals , Body Size , China , Male , Organ Size
20.
Zootaxa ; 4996(3): 540-554, 2021 Jul 06.
Article in English | MEDLINE | ID: mdl-34810514

ABSTRACT

Six species of geckos in the genus Goniurosaurus have been recorded from Guangxi, China. Here we describe a new species, Goniurosaurus chengzheng sp. nov. The new species is similar to allied species from Guangxi, but unique in a combination of the following characters: (1) four body bands with three between limb insertions; (2) precloacal pores 20; (3) body color reddish- brown; (4) snout to eye distance: eye to ear distance 1. We used the mitochondrial genes 16S and cytb to confirm the distinctiveness of the species and place it within a molecular phylogeny of Goniurosaurus. The type specimens are deposited in the Museum of Biology, East China Normal University (ECNU).


Subject(s)
Lizards , Animal Distribution , Animal Structures , Animals , China , Genes, Mitochondrial , Lizards/genetics , Phylogeny
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