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1.
Clin Genet ; 95(2): 253-261, 2019 02.
Article in English | MEDLINE | ID: mdl-28857140

ABSTRACT

The Say-Barber-Biesecker-Young-Simpson variant of Ohdo syndrome (SBBYSS) and Genitopatellar syndrome (GTPTS) are 2 rare but clinically well-described diseases caused by de novo heterozygous sequence variants in the KAT6B gene. Both phenotypes are characterized by significant global developmental delay/intellectual disability, hypotonia, genital abnormalities, and patellar hypoplasia/agenesis. In addition, congenital heart defects, dental abnormalities, hearing loss, and thyroid anomalies are common to both phenotypes. This broad clinical overlap led some authors to propose the concept of KAT6B spectrum disorders. On the other hand, some clinical features could help to differentiate the 2 disorders. Furthermore, it is possible to establish a genotype-phenotype correlation when considering the position of the sequence variant along the gene, supporting the notion of the 2 disorders as really distinct entities.


Subject(s)
Blepharophimosis/diagnosis , Blepharophimosis/etiology , Congenital Hypothyroidism/diagnosis , Congenital Hypothyroidism/etiology , Disease Susceptibility , Heart Defects, Congenital/diagnosis , Heart Defects, Congenital/etiology , Intellectual Disability/diagnosis , Intellectual Disability/etiology , Joint Instability/diagnosis , Joint Instability/etiology , Alleles , Biomarkers , Diagnosis, Differential , Facies , Genetic Association Studies , Genetic Predisposition to Disease , Genetic Variation , Humans , Phenotype
2.
Clin Genet ; 93(3): 545-556, 2018 03.
Article in English | MEDLINE | ID: mdl-28556904

ABSTRACT

Whole exome sequencing (WES) has made the identification of causative SNVs/InDels associated with rare Mendelian conditions increasingly accessible. Incorporation of softwares allowing CNVs detection into the WES bioinformatics pipelines may increase the diagnostic yield. However, no standard protocols for this analysis are so far available and CNVs in non-coding regions are totally missed by WES, in spite of their possible role in the regulation of the flanking genes expression. So, in a number of cases the diagnostic workflow contemplates an initial investigation by genomic arrays followed, in the negative cases, by WES. The opposite workflow may also be applied, according to the familial segregation of the disease. We show preliminary results for a diagnostic application of a single next generation sequencing panel permitting the concurrent detection of LOH and variations in sequences and copy number. This approach allowed us to highlight compound heterozygosity for a CNV and a sequence variant in a number of cases, the duplication of a non-coding region responsible for sex reversal, and a whole-chromosome isodisomy causing reduction to homozygosity for a WFS1 variant. Moreover, the panel enabled us to detect deletions, duplications, and amplifications with sensitivity comparable to that of the most widely used array-CGH platforms.


Subject(s)
Genetic Predisposition to Disease , Genetic Testing , Genetic Variation , Genome-Wide Association Study , High-Throughput Nucleotide Sequencing , Adolescent , Adult , Child , Child, Preschool , DNA Copy Number Variations , Female , Genetic Testing/methods , Genome-Wide Association Study/methods , High-Throughput Nucleotide Sequencing/methods , Humans , INDEL Mutation , Infant , Loss of Heterozygosity , Male , Polymorphism, Single Nucleotide , Sequence Analysis, DNA , Young Adult
3.
Clin Genet ; 92(4): 440-443, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28266014

ABSTRACT

Prader-Willi syndrome is a complex condition caused by lack of expression of imprinted genes in the paternally derived region of chromosome 15 (15q11q13). A small number of patients with Prader-Willi phenotype have been discovered to have narrow deletions, not encompassing the whole critical region, but only the SNORD116 cluster, which includes genes codifying for small nucleolar RNAs. This kind of deletion usually is not detected by the classic DNA methylation analysis test. We present the case of a male patient with a mild Prader-Willi phenotype and a small deletion including SNORD116, diagnosed by methylation-sensitive multiplex ligation-dependent probe amplification (MLPA. The patient showed neonatal hypotonia, hyperphagia, obesity, central hypogonadism, hypothyroidism, strabismus. Stature and intellectual development are within the normal range. The presence of macrocephaly, observed in other cases of SNORD116 deletions as well, is uncommon for the classic phenotype of the syndrome.


Subject(s)
Megalencephaly/genetics , Prader-Willi Syndrome/genetics , RNA, Small Nucleolar/genetics , Adolescent , DNA Methylation/genetics , Gene Deletion , Genomic Imprinting/genetics , Humans , Male , Megalencephaly/physiopathology , Phenotype , Prader-Willi Syndrome/physiopathology
4.
J Med Genet ; 44(12): 750-62, 2007 Dec.
Article in English | MEDLINE | ID: mdl-17766364

ABSTRACT

Using array comparative genome hybridisation (CGH) 41 de novo reciprocal translocations and 18 de novo complex chromosome rearrangements (CCRs) were screened. All cases had been interpreted as "balanced" by conventional cytogenetics. In all, 27 cases of reciprocal translocations were detected in patients with an abnormal phenotype, and after array CGH analysis, 11 were found to be unbalanced. Thus 40% (11 of 27) of patients with a "chromosomal phenotype" and an apparently balanced translocation were in fact unbalanced, and 18% (5 of 27) of the reciprocal translocations were instead complex rearrangements with >3 breakpoints. Fourteen fetuses with de novo, apparently balanced translocations, all but two with normal ultrasound findings, were also analysed and all were found to be normal using array CGH. Thirteen CCRs were detected in patients with abnormal phenotypes, two in women who had experienced repeated spontaneous abortions and three in fetuses. Sixteen patients were found to have unbalanced mutations, with up to 4 deletions. These results suggest that genome-wide array CGH may be advisable in all carriers of "balanced" CCRs. The parental origin of the deletions was investigated in 5 reciprocal translocations and 11 CCRs; all were found to be paternal. Using customized platforms in seven cases of CCRs, the deletion breakpoints were narrowed down to regions of a few hundred base pairs in length. No susceptibility motifs were associated with the imbalances. These results show that the phenotypic abnormalities of apparently balanced de novo CCRs are mainly due to cryptic deletions and that spermatogenesis is more prone to generate multiple chaotic chromosome imbalances and reciprocal translocations than oogenesis.


Subject(s)
Chromosome Deletion , Chromosome Disorders/genetics , Translocation, Genetic , Abnormalities, Multiple/genetics , Abortion, Habitual/genetics , Adult , Child, Preschool , Chromosome Breakage , Chromosome Disorders/pathology , Chromosome Painting , Female , Fetal Diseases/genetics , Humans , In Situ Hybridization, Fluorescence , Infant, Newborn , Intellectual Disability/genetics , Male , Nucleic Acid Hybridization , Oogenesis , Phenotype , Prenatal Diagnosis , Spermatogenesis
5.
Histopathology ; 50(6): 720-6, 2007 May.
Article in English | MEDLINE | ID: mdl-17493236

ABSTRACT

AIMS: Osteopontin (OPN) is a matricellular protein involved in tissue remodelling, cell-mediated immunity and malignant transformation. High OPN serum levels predict poor prognosis in non-small cell carcinoma and set patients with malignant pleural mesothelioma (MM) apart from disease-free asbestos-exposed individuals. Yet neither the spectrum of tissue expression nor the signalling pathways of OPN in MM and pulmonary adenocarcinoma have been characterized, although in vitro evidence links OPN to the epidermal growth factor receptor (EGFR) pathway. The aim of this study was to address these deficiencies. METHODS AND RESULTS: OPN expression was investigated immunohistochemically in 104 adenocarcinomas and 38 MM and correlated with histological features, including tumour type, grade and proliferation and with expression of activated intermediary EGFR signalling pathway molecules p65, p-AKT, p-ERK, p-STAT-3, and of metalloproteinase (MMP)-1, MMP-2 and MMP-9. In MM, OPN expression was widespread (36/38) and independent of the molecular parameters studied. In adenocarcinoma, high OPN expression was correlated with expression of p65, p-ERK and MMP-9. CONCLUSIONS: Frequent OPN expression is typical of, but not specific for MM, whereas it appears to select adenocarcinoma cases with p65 and MMP-9 expression, suggesting a link with EGFR signalling pathways.


Subject(s)
Adenocarcinoma/metabolism , Lung Neoplasms/metabolism , Matrix Metalloproteinase 9/metabolism , Mesothelioma/metabolism , Osteopontin/metabolism , Pleural Neoplasms/metabolism , Transcription Factor RelA/metabolism , Adenocarcinoma/diagnosis , Adenocarcinoma/genetics , Biomarkers, Tumor/genetics , Biomarkers, Tumor/metabolism , Cell Proliferation , Diagnosis, Differential , ErbB Receptors/physiology , Extracellular Signal-Regulated MAP Kinases/physiology , Gene Expression Regulation, Neoplastic , Humans , Lung/metabolism , Lung/pathology , Lung Neoplasms/diagnosis , Lung Neoplasms/genetics , Matrix Metalloproteinase 9/genetics , Mesothelioma/diagnosis , Mesothelioma/genetics , Osteopontin/genetics , Pleural Neoplasms/diagnosis , Pleural Neoplasms/genetics , Signal Transduction/physiology , Transcription Factor RelA/genetics
6.
Histopathology ; 42(3): 270-9, 2003 Mar.
Article in English | MEDLINE | ID: mdl-12605647

ABSTRACT

AIMS: Differentiating sarcomatoid mesothelioma from other pleural-based spindle cell tumours by light microscopy can be challenging, especially in a biopsy. The role of immunohistochemistry in this differential diagnosis is not as well defined as it is for distinguishing epithelioid mesothelioma from adenocarcinoma. In this study, we investigate the utility of diagnostic immunohistochemistry for distinguishing sarcomatoid mesothelioma from its histological mimics, high-grade sarcoma and pulmonary sarcomatoid carcinoma. METHODS: We stained 20 mesotheliomas with sarcomatoid components (10 biphasic and 10 sarcomatoid mesotheliomas) for pan-cytokeratin, cytokeratin 5/6, calretinin, WT-1, thrombomodulin, and smooth muscle actin. Intensity and distribution of staining were assessed using a semiquantitative scale. Only tumours with unequivocal staining were considered positive for tabulation. We compared the immunophenotypic profiles of these tumours with 24 high-grade sarcomas, 10 pulmonary sarcomatoid carcinomas, and 16 epithelioid mesotheliomas. The sarcomatoid carcinomas were also stained for thyroid transcription factor-1 (TTF-1). RESULTS: Pan-cytokeratin stained 70% of sarcomatoid mesotheliomas, 17% of sarcomas, 90% of sarcomatoid carcinomas, and 100% of epithelioid mesotheliomas. Cytokeratin 5/6 and WT-1 stained most epithelioid mesotheliomas, but rarely stained sarcomas, sarcomatoid carcinomas, or the sarcomatoid components of mesothelioma. Calretinin and thrombomodulin each stained 70% of sarcomatoid mesotheliomas. However, calretinin was also positive in 17% of sarcomas and in 60% of sarcomatoid carcinomas, while thrombomodulin was positive in 38% of sarcomas and in 40% of sarcomatoid carcinomas. Smooth muscle actin was expressed in 60% of sarcomatoid mesotheliomas and in 58% of sarcomas, but in only 10% of sarcomatoid carcinomas. All 10 sarcomatoid carcinomas were negative for TTF-1. CONCLUSIONS: Mesothelioma shows decreased expression of epithelial and mesothelial epitopes in its sarcomatoid components. A wide immunophenotypic overlap exists among sarcomatoid mesotheliomas, sarcoma, and sarcomatoid carcinomas. Cytokeratin and calretinin have the most value in differentiating sarcomatoid mesothelioma from sarcoma. However, because sarcomatoid mesothelioma can occasionally be cytokeratin-negative, the distinction between it and sarcoma may become arbitrary. With the exception of smooth muscle actin, all the markers studied showed similar distributions in sarcomatoid mesothelioma and sarcomatoid carcinoma, including frequent calretinin and thrombomodulin expression in both tumours. Thus, immunohistochemistry plays a more limited role in the differential diagnosis of sarcomatoid tumours compared with epithelioid tumours. For sarcomatoid tumours involving the pleural lining, clinicopathological data, especially information about the gross appearance of the tumour (i.e. localized versus diffuse pleural-based mass), should be noted and carefully correlated with microscopic and immunohistochemical findings.


Subject(s)
Lung Neoplasms/metabolism , Mesothelioma/metabolism , Sarcoma/metabolism , Biomarkers, Tumor/metabolism , Carcinosarcoma/pathology , Diagnosis, Differential , Humans , Immunohistochemistry , Lung Neoplasms/pathology , Lung Neoplasms/surgery , Mesothelioma/pathology , Mesothelioma/surgery , Sarcoma/pathology , Sarcoma/surgery
7.
Clin Cancer Res ; 7(2): 259-66, 2001 Feb.
Article in English | MEDLINE | ID: mdl-11234877

ABSTRACT

Loss of heterozygosity (LOH) involving chromosomes 3p, 5q, 9p, or 17p and aberrant expression or mutation of p53 are reported previously in selected bronchial dysplasias and squamous cell cancers (SCCs). Yet, comprehensive analyses of LOH patterns at these chromosomal sites and of p53 alterations are not reported for histologically normal bronchial epithelium, high-grade bronchial dysplasia, and SCC present in the same pulmonary resections. Whether concordant or discordant genetic changes are detected in these bronchial tissues, especially when multiple high-grade dysplastic bronchial lesions are present, was studied. Genomic DNA was microdissected from eight pulmonary SCCs and high-grade dysplastic lesions that were associated with SCC. In four cases, two independent high-grade dysplastic bronchial lesions were identified. When available, histologically normal bronchial epithelium was microdissected. Germ-line genomic DNA was isolated from normal lymph nodes. LOH was assessed for 15 microsatellite markers on chromosomes 3p, 5q, 9p, or 17p, sites frequently deleted in lung cancers. Immunohistochemical p53 expression was studied and correlated with p53 DNA sequence analyses. Progressive LOH for these markers was found when SCCs were compared with high-grade dysplasia and histologically normal bronchial epithelium present in the same resections. Histologically normal bronchial specimens had LOH in up to 27% of informative markers. High-grade dysplastic lesions exhibited LOH for 18-45% and SCC had LOH for 18-73% of the markers. Common regions of LOH were found in some dysplasias compared with SCCs. In other dysplasias, discordance was found relative to SCCs, especially for p53 mutations. In cases with a single or second high-grade dysplasia associated with SCC, heterogeneity in LOH markers was detected. These concordant and discordant changes were consistent with convergent and divergent clonal selection pathways in pulmonary squamous cell carcinogenesis. Some histologically normal bronchial epithelial tissues had genetic changes more similar to those in the SCCs than in dysplastic lesions. DNA loss or mutations accumulate in SCC, but discordant genetic changes can exist in the same carcinogen-exposed bronchial tissues. These findings have implications for lung cancer prevention trials.


Subject(s)
Bronchial Diseases/genetics , Carcinoma, Squamous Cell/genetics , Lung Neoplasms/genetics , Mutation , Bronchial Diseases/pathology , Carcinoma, Squamous Cell/pathology , Chromosomes, Human, Pair 17/genetics , Chromosomes, Human, Pair 3/genetics , Chromosomes, Human, Pair 5/genetics , Chromosomes, Human, Pair 9/genetics , DNA Mutational Analysis , DNA Primers/genetics , DNA, Neoplasm/analysis , Genes, p53 , Humans , Loss of Heterozygosity , Lung Neoplasms/pathology , Microsatellite Repeats/genetics , Neoplasm Proteins/genetics
8.
BMC Mol Biol ; 1: 2, 2000.
Article in English | MEDLINE | ID: mdl-11114844

ABSTRACT

BACKGROUND: PCR amplification of target molecules involves sequence specific primers that flank the region to be amplified. While this technique is generally routine, its applicability may not be sufficient to generate a desired target molecule from two separate regions involving intron /exon boundaries. For these situations, the generation of full-length complementary DNAs from two partial genomic clones becomes necessary for the family of low abundance genes. RESULTS: The first approach we used for the isolation of full-length cDNA from two known genomic clones of Hox genes was based on fusion PCR. Here we describe a simple and efficient method of amplification for homeobox D13 (HOXD13) full length cDNA from two partial genomic clones. Specific 5' and 3' untranslated region (UTR) primer pairs and website program (primer3_www.cgv0.2) were key steps involved in this process. CONCLUSIONS: We have devised a simple, rapid and easy method for generating cDNA clone from genomic sequences. The full length HOXD13 clone (1.1 kb) generated with this technique was confirmed by sequence analysis. This simple approach can be utilized to generate full-length cDNA clones from available partial genomic sequences.

9.
Diagn Mol Pathol ; 9(1): 1-8, 2000 Mar.
Article in English | MEDLINE | ID: mdl-10718206

ABSTRACT

Synovial sarcoma is characterized by a specific recurrent translocation t(X; 18), resulting in either the SYT-SSX1 or SYT-SSX2 gene fusion. Because this is the primary genetic alteration in these tumors, we sought to identify the impact of molecular heterogeneity of the t(X;18) on cell proliferation, apoptosis, and epithelial differentiation in synovial sarcoma. Seventy-three patients with synovial sarcoma (18 biphasic, 55 monophasic) were selected on the basis of availability of tumor material for molecular and immunohistochemical analysis. Tumors were classified as biphasic on the basis of morphologic glandular differentiation. SYT-SSX fusion transcripts were examined by reverse transcriptase polymerase chain reaction using tumor RNA extracted from frozen or paraffin-embedded tissue. Cell proliferation was assessed immunohistochemically by the Ki-67 labeling index. Apoptosis was analyzed immunohistochemically with BAX and BCL2 antibodies and by the TUNEL method. Immunohistochemical evidence of epithelial differentiation was assessed using antibodies to cytokeratins and epithelial membrane antigen. Approximately two thirds of the tumors had an SYT-SSX1 and one third had an SYT-SSX2 fusion transcript. There was a strong association between SYT-SSX fusion type and histologic subtype. All biphasic synovial sarcomas had the SYT-SSX1 fusion, whereas all tumors with SYT-SSX2 were of monophasic morphology. There was, however, no association between SYT-SSX fusion type and expression of cytokeratins and epithelial membrane antigen among monophasic tumors. Tumors with SYT-SSX2 had a significantly higher mean and median Ki-67 labeling index than those with SYT-SSX1, but a comparison of Ki-67 according to fusion type, histologic type, and sample source suggested that the main determinants of proliferation rate were the latter two factors. Specifically, monophasic tumors and metastatic tumors showed significantly higher Ki-67 scores. Apoptosis (by TUNEL) was rarely observed, consistent with prominent expression of the anti-apoptotic protein BCL2 in almost all cases. TUNEL, BCL2, and BAX results did not correlate with SYT-SSX fusion type. These data confirm the strong association of SYT-SSX fusion transcript type with morphologic but not immunophenotypic epithelial differentiation in synovial sarcoma.


Subject(s)
Biomarkers, Tumor/genetics , Oncogene Proteins, Fusion/genetics , Sarcoma, Synovial/genetics , Soft Tissue Neoplasms/genetics , Apoptosis , Biomarkers, Tumor/metabolism , Cell Differentiation , DNA Primers/chemistry , Epithelium/pathology , Humans , In Situ Nick-End Labeling , Ki-67 Antigen/metabolism , Oncogene Proteins, Fusion/metabolism , Proto-Oncogene Proteins/metabolism , Proto-Oncogene Proteins c-bcl-2/metabolism , RNA, Neoplasm/analysis , Reverse Transcriptase Polymerase Chain Reaction , Sarcoma, Synovial/metabolism , Sarcoma, Synovial/secondary , Soft Tissue Neoplasms/metabolism , Soft Tissue Neoplasms/pathology , bcl-2-Associated X Protein
10.
Cancer Res ; 59(10): 2470-6, 1999 May 15.
Article in English | MEDLINE | ID: mdl-10344760

ABSTRACT

Increased protein expression of the G1 cyclins D1 and E is reported in invasive non-small cell lung carcinoma. However, during transformation of the bronchial epithelium, overexpression of these species occurs, and their relationship to aberrant expression of p53 and retinoblastoma (Rb) has not been described previously. To determine the expression of these cell cycle regulators during the development of invasive squamous cell carcinoma (SCC) of the lung, the immunohistochemical expression patterns in normal bronchial epithelium (n = 36), squamous metaplasia (SM; n = 28), and epithelial atypia (n = 34) were compared with that in low-grade dysplasia (LGD; n = 17), high-grade bronchial dysplasia (HGD; n = 30), and SCC (n = 36). Monoclonal anti-p53 Pab1801, polyclonal anti-cyclin D1 DCS6, monoclonal anti-cyclin E HE12, and monoclonal anti-Rb OP-66 antibodies were used. Cyclin D1 was not expressed in normal bronchial epithelium but was detected in 7% of SMs, 15% of atypias; 18% of LGDs, 47% of HGDs, and 42% of SCCs. Cyclin E was not detected in normal epithelium (n = 24), SM (n = 16), or LGD (n = 12), but it was found in 9% of atypias (2 of 22), 33% of HGDs (7 of 21), and 54% of SCCs (13 of 24). p53 was not expressed in normal epithelium, SM, and LGD, but it was overexpressed in 6% of atypias, 53% of HGDs, and 61% of SCCs. Abnormal Rb expression was found only in 2 of 36 cases of SCC. A total of 91% of HGDs and 92% of SCCs exhibited overexpression of at least one of the p53, cyclin D1, or cyclin E species. However, no link was observed between overexpression of p53 and the overexpressed G1 cyclins in preneoplastic lesions. Overexpression of cyclin D1, cyclin E, and p53 occurs frequently and independently in pulmonary SCC and is detected in lesions before the development of invasive carcinoma. In contrast, altered Rb expression is a late and infrequent event in squamous cell carcinogenesis.


Subject(s)
Bronchial Diseases/genetics , Bronchial Neoplasms/genetics , Carcinoma, Squamous Cell/genetics , Cell Transformation, Neoplastic/genetics , Cyclin D1/biosynthesis , Cyclin E/biosynthesis , Gene Expression Regulation , Precancerous Conditions/genetics , Bronchial Diseases/metabolism , Bronchial Diseases/pathology , Bronchial Neoplasms/metabolism , Carcinoma, Squamous Cell/metabolism , Cell Division , Cyclin D1/genetics , Cyclin E/genetics , Epithelial Cells/metabolism , Gene Expression Regulation, Neoplastic , Genes, Retinoblastoma , Humans , Metaplasia , Neoplasm Invasiveness , Neoplasm Proteins/biosynthesis , Neoplasm Proteins/genetics , Precancerous Conditions/metabolism , Precancerous Conditions/pathology , Retinoblastoma Protein/biosynthesis , Retrospective Studies
11.
J Natl Cancer Inst ; 91(7): 599-604, 1999 Apr 07.
Article in English | MEDLINE | ID: mdl-10203278

ABSTRACT

BACKGROUND: Unknown primary head and neck squamous cell carcinoma (HNSCC) presents as a cervical lymph node metastasis without identification of the primary tumor, despite thorough diagnostic work-up that includes physical examination, computed tomography, esophagoscopy, laryngoscopy, bronchoscopy, and multiple surveillance biopsies. We investigated whether the site of origin of the primary tumor could be localized in the upper aerodigestive tract mucosa by detection of genetic alterations identical to those found in metastatic lesions. METHODS: Microsatellite analysis was performed on metastatic tumors obtained from 18 patients with unknown primary HNSCC. Histologically benign surveillance biopsy specimens were also analyzed. Patients were followed up to 13 years with continuing surveillance for primary mucosal tumors. Most patients were treated with neck dissection followed by radiation therapy to the affected neck and ipsilateral Waldeyer's ring. RESULTS: In 10 (55%) of the 18 patients, at least one histopathologically benign mucosal biopsy specimen from defined anatomic sites (i.e., most likely sites for an occult primary tumor) demonstrated a pattern of genetic alterations identical to that present in cervical lymph node metastases. One patient harboring genetic alterations in the base of the tongue and two patients harboring genetic alterations in a tonsillar fossa subsequently developed HNSCC in the identical or adjacent mucosal region; all three of the primary head and neck mucosal tumors that eventually appeared between 1 and 13 years later in these patients had genetic changes identical to those in the benign mucosal biopsy specimens and in the metastatic lymph nodes. CONCLUSIONS: These data support the hypothesis that histopathologically benign mucosa of the upper aerodigestive tract may harbor foci of clonal, preneoplastic cells that are genetically related to metastatic HNSCC and that such mucosal sites are the sites of origin of unknown primary HNSCC. Microsatellite analysis may represent a clinically useful tool for determining such sites.


Subject(s)
Carcinoma, Squamous Cell/diagnosis , Carcinoma, Squamous Cell/genetics , DNA, Neoplasm/genetics , Head and Neck Neoplasms/diagnosis , Head and Neck Neoplasms/genetics , Microsatellite Repeats , Neoplasms, Unknown Primary/diagnosis , Neoplasms, Unknown Primary/genetics , Carcinoma, Squamous Cell/pathology , Head and Neck Neoplasms/pathology , Humans , Lymphatic Metastasis , Neoplasms, Unknown Primary/pathology , Polymerase Chain Reaction
12.
J Natl Cancer Inst ; 91(4): 373-9, 1999 Feb 17.
Article in English | MEDLINE | ID: mdl-10050872

ABSTRACT

BACKGROUND: Retinoids (derivatives of vitamin A) are reported to reduce the occurrence of some second primary cancers, including aerodigestive tract tumors. In contrast, beta-carotene does not reduce the occurrence of primary aerodigestive tract cancers. Mechanisms explaining these effective retinoid and ineffective carotenoid chemoprevention results are poorly defined. Recently, the all-trans-retinoic acid (RA)-induced proteolysis of cyclin D1 that leads to the arrest of cells in G1 phase of the cell cycle was described in human bronchial epithelial cells and is a promising candidate for such a mechanism. In this study, we have investigated this proteolysis as a common signal used by carotenoids or receptor-selective and receptor-nonselective retinoids. METHODS: We treated cultured normal human bronchial epithelial cells, immortalized human bronchial epithelial cells (BEAS-2B), and transformed human bronchial epithelial cells (BEAS-2BNNK) with receptor-selective or receptor-nonselective retinoids or with carotenoids and studied the effects on cell proliferation by means of tritiated thymidine incorporation and on cyclin D1 expression by means of immunoblot analysis. We also examined whether calpain inhibitor I, an inhibitor of the 26S proteasome degradation pathway, affected the decline (i.e., proteolysis) of cyclin D1. RESULTS: Receptor-nonselective retinoids were superior to the carotenoids studied in mediating the decline in cyclin D1 expression and in suppressing the growth of bronchial epithelial cells. Retinoids that activated retinoic acid receptor beta or retinoid X receptor pathways preferentially led to a decrease in the amount of cyclin D1 protein and a corresponding decline in growth. The retinoid-mediated degradation of cyclin D1 was blocked by cotreatment with calpain inhibitor I. CONCLUSIONS: Retinoid-dependent cyclin D1 proteolysis is a common chemoprevention signal in normal and neoplastic human bronchial epithelial cells. In contrast, carotenoids did not affect cyclin D1 expression. Thus, the degradation of cyclin D1 is a candidate intermediate marker for effective retinoid-mediated cancer chemoprevention in the aerodigestive tract.


Subject(s)
Anticarcinogenic Agents/pharmacology , Bronchi/drug effects , Bronchi/metabolism , Carotenoids/pharmacology , Cyclin D1/metabolism , Epithelial Cells/drug effects , Epithelial Cells/metabolism , Retinoids/pharmacology , Bronchial Neoplasms/metabolism , Bronchial Neoplasms/prevention & control , Calpain/antagonists & inhibitors , Cells, Cultured , Humans
13.
Int J Cancer ; 80(2): 199-204, 1999 Jan 18.
Article in English | MEDLINE | ID: mdl-9935200

ABSTRACT

The INK4A gene, localized to human chromosome 9p21, encodes p16INK4A, a tumor suppressor that functions at least in part through the inhibition of CDK4, a cyclin-dependent kinase encoded by a gene at 12q13. To examine INK4A gene alterations in uncultured samples of osteosarcoma and the relationship between INK4A and CDK4 alterations, we analyzed the INK4A and CDK4 genes in 87 specimens from 79 patients. INK4A deletion and CDK4 gene amplification were determined by quantitative Southern blot analysis. INK4A exon 2 was screened for mutation by polymerase chain reaction and single-strand conformational polymorphism analysis. Methylation at the CpG island in INK4A, associated with loss of p16INK4A expression, was assessed by Southern blot analysis using methylation-sensitive restriction enzymes. INK4A deletion (4/55) or rearrangement (1/55) was found in 5 of 55 cases. No INK4A exon 2 point mutations and methylation were detected. CDK4 gene amplification was found in 6 of 67 samples, but not in tumors with INK4A alteration. Amplification analysis of other genes at 12q13 (GLI, CHOP, HMGI-C and MDM2) in these 6 cases supports the view that CDK4 and MDM2 are independent targets for amplification, with variable amplification of the intervening region containing HMGI-C. Of 46 patients studied for both INK4A alterations and CDK4 amplification, the tumors in 22% contained one or the other. The prevalence of these alterations, in conjunction with the reported inactivation of RB in up to 80% of cases, suggests that genetic lesions deregulating the G1 to S cell cycle checkpoint may be an almost constant feature in the pathogenesis of osteosarcoma.


Subject(s)
Bone Neoplasms/metabolism , Chromosomes, Human, Pair 12 , Cyclin-Dependent Kinases/genetics , Osteosarcoma/metabolism , Proto-Oncogene Proteins , Adolescent , Adult , Child , Chromosome Mapping , Cyclin-Dependent Kinase 4 , Cyclin-Dependent Kinase Inhibitor p16 , DNA Methylation , Female , Gene Amplification , Humans , Male , Polymerase Chain Reaction , Polymorphism, Single-Stranded Conformational
14.
J Natl Cancer Inst ; 89(21): 1609-15, 1997 Nov 05.
Article in English | MEDLINE | ID: mdl-9362159

ABSTRACT

BACKGROUND: Telomerase enzyme activity is not detected in most normal cells, a phenomenon believed to be associated with limitations on cellular proliferation. Since this activity is detected in nearly all human tumors, including non-small-cell lung cancers, it has been suggested that telomerase activation may be coupled to acquisition of the malignant phenotype. In this study, we determined whether telomerase activity was associated with tumor pathologic stage, tumor cell proliferation rates, and clinical outcome in a cohort of patients with resected non-small-cell lung cancer for whom long-term follow-up was available. METHODS: Primary tumor specimens from 99 patients treated with surgery alone and six patients treated with surgery after chemotherapy were analyzed. Telomerase activity was measured by means of a modified Telomeric Repeat Amplification Protocol (TRAP) assay. Southern blot analysis of terminal restriction fragments was used to evaluate telomere length. Immunohistochemical analysis of Ki-67, a proliferation-associated nuclear antigen, was used to assess tumor cell proliferation. RESULTS: Telomerase activity was detected in 84 of the 99 tumors treated with surgery alone; this activity was not detected in specimens of adjacent, benign lung tissue. Telomerase was detected in only three of six tumors resected after chemotherapy. For the surgery-alone group, statistically significant positive associations were found between the level of telomerase activity and tumor stage, lymph node metastasis, pathologic TNM (tumor-node-metastasis) stage, and Ki-67 immunostaining; a statistically significant inverse association was found between telomerase activity and patient age. No statistically significant differences in telomere length were found in relation telomerase activity or pathologic stage. Telomerase activity was not found to be associated with clinical outcome in a multivariate Cox proportional hazards analysis adjusted for tumor stage and lymph node status. CONCLUSIONS: High telomerase activity is detected frequently in primary non-small-cell lung cancers that exhibit high tumor cell proliferation rates and advanced pathologic stage.


Subject(s)
Carcinoma, Non-Small-Cell Lung/enzymology , Carcinoma, Non-Small-Cell Lung/pathology , Lung Neoplasms/enzymology , Lung Neoplasms/pathology , Telomerase/metabolism , Telomere/enzymology , Telomere/pathology , Adenocarcinoma/enzymology , Adenocarcinoma/pathology , Blotting, Southern , Carcinoma, Large Cell/enzymology , Carcinoma, Large Cell/pathology , Carcinoma, Non-Small-Cell Lung/secondary , Carcinoma, Squamous Cell/enzymology , Carcinoma, Squamous Cell/pathology , Cell Division , Humans , Ki-67 Antigen , Lymphatic Metastasis , Neoplasm Staging , Proportional Hazards Models
16.
Cancer ; 79(8): 1541-7, 1997 Apr 15.
Article in English | MEDLINE | ID: mdl-9118036

ABSTRACT

BACKGROUND: Alterations of the p53 gene and of MDM2, a gene coding for a p53 binding protein, have been implicated in the pathogenesis of osteosarcoma (OS). METHODS: To determine the frequency of alterations of the p53/MDM2 pathway in OS and their possible correlation with clinicopathologic features, MDM2 copy number and p53 protein levels were determined in a series of 83 samples of OS by quantitative Southern blot analysis and immunohistochemistry, respectively. RESULTS: Positivity for p53 was found in 26.5% and MDM2 amplification in 6.6% of the samples analyzed in a mutually exclusive fashion with one exception. Overall, alterations of the p53/MDM2 pathway occurred in 34% of cases; p53 accumulation was not associated with a higher proliferative rate. The mean age of patients with p53 positive OS (40 years) was older than that of the p53 negative group (28 years) (P < 0.04). Furthermore, three of the four cases of OS arising in Paget's disease showed p53 accumulation. CONCLUSIONS: Alterations of the p53/MDM2 pathway are frequent in OS and usually represent mutually exclusive tumorigenic events. p53 does not appear to be a major determinant of proliferative rate in OS.


Subject(s)
Bone Neoplasms/genetics , Genes, p53/genetics , Neoplasm Proteins/genetics , Nuclear Proteins , Osteosarcoma/genetics , Proto-Oncogene Proteins/genetics , Adult , Blotting, Southern , Bone Neoplasms/metabolism , Bone Neoplasms/pathology , Cell Division/genetics , Gene Amplification , Humans , Immunohistochemistry , Neoplasm Proteins/metabolism , Osteosarcoma/metabolism , Osteosarcoma/pathology , Proto-Oncogene Proteins/metabolism , Proto-Oncogene Proteins c-mdm2
17.
Am J Surg Pathol ; 20(11): 1385-93, 1996 Nov.
Article in English | MEDLINE | ID: mdl-8898843

ABSTRACT

The term microadenocarcinoma was first proposed for a subtype of pancreatic carcinoma by Cubilla and Fitzgerald in 1975 based largely on the morphological features of 15 cases. Since that time, no independent studies have appeared in the English literature to address whether microadenocarcinoma represents a distinctive tumor or a pattern of growth, and some authors have questioned its existence as a definable entity. Immunohisto-chemistry is now available to allow the identification of lines of differentiation in pancreatic neoplasms, on which their classification is largely based. Reasoning that heterogeneity of differentiation between different cases would not justify the separation of microadenocarcinomas from other better defined pancreatic neoplasms, we reevaluated 12 cases from the original series using antibodies for acinar, endocrine, and ductal differ-entiation. Two distinctive morphological patterns were identified: microglandular and solid cribriform. The microglandular cases (n = 6) were not separable from typical ductal adenocarcinomas either morphologically or immunophenotypically. Of the solid-cribriform cases (n = 6), immunohistochemistry revealed three to be acinar cell carcinomas, one an endocrine carcinoma, one a mixed endocrine-ductal carcinoma, and one a ductal adenocarcinoma. We concluded that with the benefit of further study, most of these cases could be reclassified as other types of pancreatic carcinoma. Microadenocarcinoma is best regarded as a pattern of growth associated with an aggressive clinical course rather than a distinctive entity.


Subject(s)
Carcinoma, Acinar Cell/pathology , Carcinoma, Ductal, Breast/pathology , Pancreatic Neoplasms/pathology , Adult , Aged , Antibodies/analysis , Biomarkers , Carcinoma, Acinar Cell/classification , Carcinoma, Acinar Cell/metabolism , Carcinoma, Ductal, Breast/classification , Carcinoma, Ductal, Breast/metabolism , Cell Differentiation , Diagnosis, Differential , Female , Humans , Immunohistochemistry , Immunophenotyping , Male , Middle Aged , Pancreatic Neoplasms/classification , Pancreatic Neoplasms/metabolism , Retrospective Studies
18.
Oncogene ; 13(9): 1983-90, 1996 Nov 07.
Article in English | MEDLINE | ID: mdl-8934545

ABSTRACT

The retinoids are reported to reduce second primary aerodigestive tract tumors in patients with prior lung or head and neck carcinomas. Yet, the optimal retinoid useful for chemoprevention and those mechanisms linked to this chemoprevention are not identified. This study reports an in vitro model for carcinogen-induced transformation of immortalized human bronchial epithelial (BEAS-2B) cells that was adapted to study the anti-carcinogenic effects of all-trans-retinoic acid (RA). Following exposure to carcinogens: cigarette smoke condensate (CSC) or N-nitrosamine-4-(methylnitrosamino)-1-(3 pyridyl)-1-butanone (NNK), BEAS-2B cells exhibited evidence of transformation. This included an increased anchorage independent growth or acquired ability to form tumors in athymic mice. This transformation was inhibited by RA as demonstrated by a lack of augmented anchorage independent growth or tumor formation in athymic mice for the cells treated with RA. The BEAS-2B cells transformed by NNK exhibited an increase in cyclin E expression which was associated with an increase in the cyclin E-Cdk2 kinase activity. Over-expression of human cyclin E by transfection shows cyclin E enhances the basal clonal growth of BEAS-2B cells. In both the parental and transformed BEAS-2B cells, RA down-regulated cyclin E protein levels which was associated with an inhibition of growth and an accumulation of cells in G1. The data reported here suggest the decline of cyclin E expression represents a potential mechanism for the RA-induced growth suppression which is linked to the anti-carcinogenic effects of RA. Thus, this study reports the adaption of an in vitro model of lung carcinogenesis suitable to test the activity of chemoprevention agents.


Subject(s)
Bronchi/cytology , CDC2-CDC28 Kinases , Cyclins/metabolism , Down-Regulation , Tretinoin/pharmacology , Adenoviridae/genetics , Animals , Bronchi/drug effects , Bronchi/virology , Cell Cycle/drug effects , Cell Division/drug effects , Cell Transformation, Neoplastic , Cells, Cultured , Cyclin-Dependent Kinase 2 , Cyclin-Dependent Kinases/drug effects , Cyclin-Dependent Kinases/metabolism , Cyclins/drug effects , Cyclins/genetics , Drug Evaluation/methods , Enzyme Activation/drug effects , Epithelial Cells , Humans , Mice , Models, Biological , Nitrosamines/toxicity , Protein Serine-Threonine Kinases/drug effects , Protein Serine-Threonine Kinases/metabolism , Rabbits , Simian virus 40/genetics , Smoke , Transfection
19.
Am J Med Genet ; 63(2): 378-81, 1996 May 17.
Article in English | MEDLINE | ID: mdl-8725789

ABSTRACT

We report on a young male patient with an overgrowth syndrome, who had normal birth weight. He had a number of manifestations typical of the Weaver syndrome (WS), such as advanced bone age, peculiar craniofacial appearance, and camptodactyly. He also showed severe mental and speech retardation and demineralisation of the bones of the hands and feet. The latter can be considered as unreported manifestations of WS, or the patient could represent an example of a new WS-like syndrome.


Subject(s)
Abnormalities, Multiple/physiopathology , Growth Disorders/physiopathology , Abnormalities, Multiple/genetics , Abnormalities, Multiple/pathology , Child, Preschool , Foot Deformities, Congenital/genetics , Foot Deformities, Congenital/pathology , Foot Deformities, Congenital/physiopathology , Growth Disorders/genetics , Growth Disorders/pathology , Hand Deformities, Congenital/genetics , Hand Deformities, Congenital/pathology , Hand Deformities, Congenital/physiopathology , Humans , Intellectual Disability/genetics , Intellectual Disability/physiopathology , Male , Speech Disorders/genetics , Speech Disorders/physiopathology , Syndrome
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