On-Chip Isothermal Nucleic Acid Amplification on Flow-Based Chemiluminescence Microarray Analysis Platform for the Detection of Viruses and Bacteria.

This work presents an on-chip isothermal nucleic acid amplification test (iNAAT) for the multiplex amplification and detection of viral and bacterial DNA by a flow-based chemiluminescence microarray. In a principle study, on-chip recombinase polymerase amplification (RPA) on defined spots of a DNA microarray was used to spatially separate the amplification reaction of DNA from two viruses (Human adenovirus 41, Phi X 174) and the bacterium Enterococcus faecalis, which are relevant for water hygiene. By establishing the developed assay on the microarray analysis platform MCR 3, the automation of isothermal multiplex-amplification (39 °C, 40 min) and subsequent detection by chemiluminescence imaging was realized. Within 48 min, the microbes could be identified by the spot position on the microarray while the generated chemiluminescence signal correlated with the amount of applied microbe DNA. The limit of detection (LOD) determined for HAdV 41, Phi X 174, and E. faecalis was 35 GU/µL, 1 GU/µL, and 5 × 10(3) GU/µL (genomic units), which is comparable to the sensitivity reported for qPCR analysis, respectively. Moreover the simultaneous amplification and detection of DNA from all three microbes was possible. The presented assay shows that complex enzymatic reactions like an isothermal amplification can be performed in an easy-to-use experimental setup. Furthermore, iNAATs can be potent candidates for multipathogen detection in clinical, food, or environmental samples in routine or field monitoring approaches.

Rapid and simultaneous detection of ricin, staphylococcal enterotoxin B and saxitoxin by chemiluminescence-based microarray immunoassay.

Simultaneous detection of small and large molecules on microarray immunoassays is a challenge that limits some applications in multiplex analysis. This is the case for biosecurity, where fast, cheap and reliable simultaneous detection of proteotoxins and small toxins is needed. Two highly relevant proteotoxins, ricin (60 kDa) and bacterial toxin staphylococcal enterotoxin B (SEB, 30 kDa) and the small phycotoxin saxitoxin (STX, 0.3 kDa) are potential biological warfare agents and require an analytical tool for simultaneous detection. Proteotoxins are successfully detected by sandwich immunoassays, whereas competitive immunoassays are more suitable for small toxins (<1 kDa). Based on this need, this work provides a novel and efficient solution based on anti-idiotypic antibodies for small molecules to combine both assay principles on one microarray. The biotoxin measurements are performed on a flow-through chemiluminescence microarray platform MCR3 in 18 minutes. The chemiluminescence signal was amplified by using a poly-horseradish peroxidase complex (polyHRP), resulting in low detection limits: 2.9 ± 3.1 µg L(-1) for ricin, 0.1 ± 0.1 µg L(-1) for SEB and 2.3 ± 1.7 µg L(-1) for STX. The developed multiplex system for the three biotoxins is completely novel, relevant in the context of biosecurity and establishes the basis for research on anti-idiotypic antibodies for microarray immunoassays.

Quantum dot loaded liposomes as fluorescent labels for immunoassay.

Liposomes loaded with water-soluble and water-insoluble quantum dots (QD) were for the first time applied as labels in different heterogeneous immunoassays for the determination of food contaminants, using mycotoxin zearalenone (ZEN) as a model. A great deal of work was devoted to the optimal choice of phospholipids for the liposomes preparation and to the factors which are important for the stability and size of obtained liposomes. Thin-film hydration and reverse-phase evaporation techniques were evaluated in terms of stability of the obtained liposomes and their efficiency for QD loading. Conjugation of liposomes with proteins and the influence of cross-linkers to the nonspecific interaction of the obtained liposomes with the surface of microtiter plates and cartridges were investigated and 3-(2-pyridyldithio)propionic acid N-hydroxysuccinimide ester was found as the optimal cross-linker. The limits of detection (LOD) for ZEN of fluorescence-labeled immunosorbent assays were 0.6 µg kg(-1), 0.08 µg kg(-1), and 0.02 µg kg(-1), using QD, liposomes loaded with water-soluble QD, and water-insoluble QD, respectively. Similarly, the developed qualitative on-site tests using the different QD labels and taking into account the EU maximum residues level for ZEN in unprocessed cereals showed cutoff levels of 100, 50, and 20 µg kg(-1).

Automated regenerable microarray-based immunoassay for rapid parallel quantification of mycotoxins in cereals.

An automated flow-through multi-mycotoxin immunoassay using the stand-alone Munich Chip Reader 3 platform and reusable biochips was developed and evaluated. This technology combines a unique microarray, prepared by covalent immobilization of target analytes or derivatives on diamino-poly(ethylene glycol) functionalized glass slides, with a dedicated chemiluminescence readout by a CCD camera. In a first stage, we aimed for the parallel detection of aflatoxins, ochratoxin A, deoxynivalenol, and fumonisins in cereal samples in a competitive indirect immunoassay format. The method combines sample extraction with methanol/water (80:20, v/v), extract filtration and dilution, and immunodetection using horseradish peroxidase-labeled anti-mouse IgG antibodies. The total analysis time, including extraction, extract dilution, measurement, and surface regeneration, was 19 min. The prepared microarray chip was reusable for at least 50 times. Oat extract revealed itself as a representative sample matrix for preparation of mycotoxin standards and determination of different types of cereals such as oat, wheat, rye, and maize polenta at relevant concentrations according to the European Commission regulation. The recovery rates of fortified samples in different matrices, with 55-80 and 58-79%, were lower for the better water-soluble fumonisin B1 and deoxynivalenol and with 127-132 and 82-120% higher for the more unpolar aflatoxins and ochratoxin A, respectively. Finally, the results of wheat samples which were naturally contaminated with deoxynivalenol were critically compared in an interlaboratory comparison with data obtained from microtiter plate ELISA, aokinmycontrol® method, and liquid chromatography-mass spectrometry and found to be in good agreement.

A wide spectral range photoacoustic aerosol absorption spectrometer.

A photoacoustic spectrometer for the measurement of aerosol absorption spectra, based on the excitation of a pulsed nanosecond optical parametrical oscillator (OPO), will be introduced. This spectrometer is working at ambient pressure and can be used to detect and characterize different classes of aerosols. The spectrometer features a spectral range of 410 to 2500 nm and a sensitivity of 2.5 × 10(-7) m(-1) at 550 nm. A full characterization of the system in the visible spectral range is demonstrated, and the potential of the system for near IR measurement is discussed. In the example of different kinds of soot particles, the performance of the spectrometer was assessed. As we demonstrate, it is possible to determine a specific optical absorption per particle by a combination of the new spectrometer with an aerosol particle counter.

Multifunctional nanoparticles for dual imaging.

For imaging with different modalities, labels, which provide contrast for all modalities, are required. Colloidal nanoparticles composed out of an inorganic core and a polymer shell offer progress in this direction. Both, the core and the polymer shell, can be synthesized to be fluorescent, magnetic, or radioactive. When different cores are combined with different polymer shells, different types of particles for dual imaging can be obtained, as for example, fluorescent cores with radioactive polymer shells. Properties and perspectives of such nanoparticles for multimodal imaging are discussed.

Magnetic nanogold microspheres-based lateral-flow immunodipstick for rapid detection of aflatoxin B2 in food.

A novel membrane-based lateral-flow immunodipstick assay was developed for the fast screening of aflatoxin B(2) (AFB(2)) as a model compound in food samples. The detector reagent consisted of magnetic nanogold microspheres (MnGMs) with nano-Fe(2)O(3) particles as core and gold nanoparticles as shell, and bio-functionalized with monoclonal anti-AFB(2) antibodies. Manually spotted AFB(2)-bovine serum albumin conjugates (AFB(2)-BSA) and goat anti-mouse IgG on nitrocellulose membrane were used as test and control lines, respectively. As the major advantage, experimental results indicated that the visual detection limit (cutoff value) of the MnGM-based dipstick immunoassay with 0.9 ng/ml AFB(2) was about threefold lower compared to a conventional immunodipstick test using gold nanoparticles as detection reagent. Qualitative results (yes/no) could be obtained within 15 min without expensive equipment. The assay was evaluated with AFB(2) spiked or naturally contaminated samples (n=8), including peanuts, hazelnuts, pistacia and almonds, receiving excellent correspondance with results from high performance liquid chromatography (HPLC). Most importantly, the assay gave no false negative results. By controlling the target antibody this assay can be easily extended for use with other food relevant toxins and thus represents a versatile detection method.

Selective trace analysis of diclofenac in surface and wastewater samples using solid-phase extraction with a new molecularly imprinted polymer.

A new molecularly imprinted polymer (MIP) for trace analysis of diclofenac in environmental water samples was prepared by a non-covalent protocol in which diclofenac was used as a template molecule. Diclofenac is a member of the class of drugs termed non-steroidal anti-inflammatory drugs (NSAIDs) which belong to the most frequently detected pharmaceuticals in the water-cycle in Europe. The MIP was synthesized using 2-vinylpyridine (2-VP) and ethylene glycol dimethacrylate (EGDMA) as a functional monomer and cross-linker, respectively, and bulk thermal polymerization method. (1)H NMR spectroscopy was used to study the interaction between diclofenac and 2-VP mixed in toluene-d(8) in pre-polymerization complex. Two non-covalent bonds were formed i.e. ionic interaction and hydrogen bonding. The binding characteristics of the MIP and diclofenac were evaluated using equilibrium binding experiments. Scatchard plot analysis revealed that two classes of binding sites were formed with dissociation constants of 55.6 micromol L(-1) and 1.43 mmol L(-1), respectively. Various parameters affecting the extraction efficiency of the polymers have been evaluated to achieve the selective preconcentration of diclofenac from aqueous samples and to reduce non-specific interactions. This resulted in an MISPE-LC/DAD method allowing the direct extraction of the analyte from sample matrix with a selective wash using dichloromethane/acetonitrile (94:6, v/v) followed by elution with dichloromethane/methanol (85:15, v/v). The recovery of a 100 ng diclofenac standard spiked into 200 mL of blank surface water was 96%, with good precision (RSD=3.3%, n=3). The MISPE was demonstrated to be applicable to the analysis of diclofenac in raw influent and final effluent wastewater samples from sewage treatment plant and revealed diclofenac concentrations of 1.31+/-0.055 microg L(-1) (n=3) and 1.60+/-0.049 microg L(-1) (n=3), respectively. Yielded results were in good agreement with the corresponding LC/TIS/MS/MS data obtained by an independent laboratory which were 1.40 and 1.50 microg L(-1) for influent and effluent samples.

Acoustical properties of selected tissue phantom materials for ultrasound imaging.

This note summarizes the characterization of the acoustic properties of four materials intended for the development of tissue, and especially breast tissue, phantoms for the use in photoacoustic and ultrasound imaging. The materials are agar, silicone, polyvinyl alcohol gel (PVA) and polyacrylamide gel (PAA). The acoustical properties, i.e., the speed of sound, impedance and acoustic attenuation, are determined by transmission measurements of sound waves at room temperature under controlled conditions. Although the materials are tested for application such as photoacoustic phantoms, we focus here on the acoustic properties, while the optical properties will be discussed elsewhere. To obtain the acoustic attenuation in a frequency range from 4 MHz to 14 MHz, two ultrasound sources of 5 MHz and 10 MHz core frequencies are used. For preparation, each sample is cast into blocks of three different thicknesses. Agar, PVA and PAA show similar acoustic properties as water. Within silicone polymer, a significantly lower speed of sound and higher acoustical attenuation than in water and human tissue were found. All materials can be cast into arbitrary shapes and are suitable for tissue-mimicking phantoms. Due to its lower speed of sound, silicone is generally less suitable than the other presented materials.

Visualisation of transient processes in biofilms by optical coherence tomography.

Biofilms occur in natural and engineered water systems. In technical processes, biofouling lowers the water quality and increases the frictional resistance in tubes. In wastewater treatment plants, biofilms are used for the removal of organic and inorganic pollutants. For improvement of antifouling strategies and for process optimisation in wastewater treatment plants, analytical techniques for online monitoring of biofilms are needed. Optical coherence tomography (OCT) is a non-invasive optical tomography technique, which is increasingly applied in medical diagnostics. It reveals photon-reflecting structures in tissue with lateral and axial resolution in the range of 10 microm. In this paper, we demonstrate the capabilities of OCT for the monitoring of biofilm structures and their detachment. OCT is able to reveal spatially resolved structural information on biofilm without staining. A main focus of this work is set on the ability of OCT to monitor transient processes with temporal resolution in a second to minute scale. These key features of OCT allow online monitoring of biofilm growth and detachment in a flow channel. Three-dimensional (3D) imaging quality, spatial resolution, and temporally resolved profiling of biofilms are demonstrated. The results give rise to the hope that OCT may evolve to a standard tool for monitoring of biofilm density.

Characterization and discrimination of pollen by Raman microscopy.

The chemical characterization and discrimination of allergy-relevant pollen (common ragweed (Ambrosia artemisiifolia), white birch (Betula pendula), English oak (Quercus robur), and European linden (Tilia cordata)) has been studied by Raman microscopy. Spectra were obtained at different excitation wavelengths (514, 633, and 780 nm) and various methods were examined to minimize the strong fluorescence background. The use of a He-Ne laser (633 nm) for excitation yields high-quality single pollen Raman spectra, which contain multiple bands due to pollen components such as carotenoids, proteins, nucleic acids, carbohydrates, and lipids. Multivariate classification, i.e. principal component analysis (PCA) and hierarchical cluster analysis, demonstrated the validity of the approach for discrimination between different pollen species.

Investigation of biocide efficacy by photoacoustic biofilm monitoring.

The undesired growth of biofilms on solid surfaces is often termed biofouling. Biofilms consist mainly of water and microbial cells which are embedded in a biopolymer matrix. Biofouling lowers the water quality and increases the frictional resistance in tubes. Further, biofilms increase the pressure differences in membrane processes and can clog filtration membranes, valves, and nozzles. For investigation and improvement of biocide efficacy and anti-fouling strategies, on-line and in situ monitoring of the biofilm is necessary. In this study, photoacoustic spectroscopy (PAS) was employed for biofilm monitoring. PAS allows the depth-resolved investigation of growth and detachment processes of biofilms. Strategies based on the oxidant hydrogen peroxide were compared to popular isothiazolinone biocides. Hydrogen peroxide allowed a very fast and efficient removal of attached biofilms, whereas no effect on the biofilm matrix was observed in most cases when isothiazolinone biocides were used.

In situ sensing of volatile organic compounds in groundwater: first field tests of a mid-infrared fiber-optic sensing system.

A prototype mid-infrared sensor system for the determination of volatile organic pollutants in groundwater was developed and tested under real-world conditions. The sensor comprises a portable Fourier transform infrared spectrometer, coupled to the sensor head via mid-infrared transparent silver halide fiber-optic cables. A 10 cm unclad middle section of the 6-m-long fiber is coated with ethylene propylene copolymer in order to enrich the analytes within the penetration depth of the evanescent field protruding from the fiber sensor head. A mixture of tetrachloroethylene, dichlorobenzene, diethyl phthalate, and xylene isomers at concentrations in the low ppm region was investigated qualitatively and quantitatively in an artificial aquifer system filled with Munich gravel. This simulated real-world site at a pilot scale enables in situ studies of the sensor response and spreading of the pollutants injected into the system with controlled groundwater flow. The sensor head was immersed into a monitoring well of the aquifer system at a distance of 1 m downstream of the sample inlet and at a depth of 30 cm. Within one hour, the analytes were clearly identified in the fingerprint region of the IR spectrum (1300 to 700 cm(-1)). The results have been validated by head-space gas chromatography, using samples collected during the field measurement. Five out of six analytes could be discriminated simultaneously; for two of the analytes the quantitative results are in agreement with the reference analysis.

Numerical modelling of the generation and transport of heat in a bottom ash monofill.

Municipal solid waste is incinerated to reduce its volume, toxicity and reactivity. Several studies have shown that the resulting bottom ash has a high exothermic capacity. Temperature measurements in municipal solid waste incineration (MSWI) bottom ash landfills have found temperatures up to 90 degrees C. Such high temperatures may affect the stability of the landfill's flexible polymer membrane liner (FML) and may also lead to an accelerated desiccation of the clay barrier. The purpose of this study was to gain detailed knowledge of temperature development under several disposal conditions in relation to the rate of ash disposal, the variation of layer thickness, and the environmental conditions in a modern landfill. Based on this knowledge, a simulation was developed to predict temperature development. Temperature development was simulated using several storage periods prior to the deposition and several modes of emplacement. Both the storage time and the mode of emplacement have a significant influence on the temperature development at the sensitive base of the landfill. Without a preliminary storage of the fresh quenched bottom ash, high temperatures at the bottom of a landfill cannot be avoided.

Process analysis of biofilms by photoacoustic spectroscopy.

Biofilms are aggregates of microorganisms and biopolymers which occur at aqueous interfaces. Biofilms play an important role in the degradation of pollutants in natural water systems as well as in wastewater treatment plants. In this communication, the use of photoacoustic spectroscopy (PAS) as a new biofilm monitoring technique is presented. PAS combines features of optical spectroscopy and ultrasonic tomography and allows a depth-resolved analysis of optically and acoustically inhomogeneous media. For the first time, both biofilm and bulk liquid were monitored by photoacoustic sensor heads. In this way, sorption of suspended iron(III) oxide particles on the outer and inner surfaces of the biofilm could be observed on-line and in situ. Colloids can act as carriers of pollutants and influence stability and degradation efficiency of biofilms.

On-line monitoring of opaque liquids by photoacoustic spectroscopy.

A new photoacoustic sensor system for on-line monitoring of highly concentrated and optical opaque liquid samples is presented. The dyeing of textiles is performed with highly concentrated dye solutions with concentrations ranging from 50 mg L(-1) up to 40 g L(-1). For process optimization and control of the wastewater, an on-line monitoring of the dye concentration is needed. Optical transmission measurements allow the determination of the dye concentration in a relatively small range. Samples with concentrations in the upper mg L(-1) and g L(-1) range have to be diluted before the measurement due to their optical opacity. Additionally, light-scattering particles have a strong effect on the transmitted light intensity. By photoacoustic spectroscopy, concentrations in condensed matter can be determined over several orders of magnitude. Furthermore, scattering particles do not generate any photoacoustic signal.

Development and characterization of a mobile photoacoustic sensor for on-line soot emission monitoring in diesel exhaust gas.

Upcoming regulations for vehicle exhaust emission demand substantial reduction of particle emission in diesel exhaust. To achieve these emission levels, the car manufacturing industry is developing new combustion concepts and exhaust after-treatment techniques such as the use of catalysts and particle filters. Many of the state-of-the-art analytical instruments do not meet the required detection limits, in combination with a high temporal resolution necessary for engine optimization. This paper reports a new detection system and the first results of its application to on-line diesel exhaust soot measurements on a engine test bench (MAN diesel engine facility Nürnberg, Germany). The instrument is based on differential photoacoustic (PA) spectroscopy of black carbon aerosol. It contains two identical PA cells, one for the measurement of the aerosol particles and one which analyses the particle-free gas. Thus, a potential cross-sensitivity to gaseous absorbers in the exhaust gas can be excluded. The PA cells were characterized in a laboratory set-up, with water vapor as reference gas and artificial soot generated by a spark discharge generator. The detection limit was found to be 2 microg m(-3) BC (for diesel soot) with a sampling rate of 3 Hz. The temporal response of the system was found to be in the order of 1 s. After full characterization of the cells, the system was transferred into a mobile 19"-rack. Characterization of the mobile sensor system under real-world conditions was performed during several measurement campaigns at an engine test bench for heavy-duty diesel engines. Results for the limit of detection, the time resolution, accuracy, repeatability, and robustness of the sensor system are very promising with regards to a routine application of the system in engine development.

Biofilm monitoring by photoacoustic spectroscopy.

The use of photoacoustic spectroscopy (PAS) as a new biofilm monitoring technique is presented. Growth and detachment of biofilms at three different positions inside a flow channel were monitored by photoacoustic measurements in the visible spectral range (lambda = 532 nm). The experimental approach allows the investigation of the influence of various process parameters (e.g. pH or flow conditions) on growth and detachment of biofilms. In addition, the distribution of the attached biomass can be monitored by depth-resolved photoacoustic measurements.

A photoacoustic technique for depth-resolved in situ monitoring of biofilms.

Biofilms occur in natural and engineered water systems. Biofouling in technical processes lowers the water quality and increases the frictional resistance in tubes. In wastewater treatment plants, biofilms are used for removal of organic an inorganic pollutants. For improvement of antifouling strategies and for process optimization in wastewater treatments plants, an analytical technique for online monitoring of biofilms is needed. In this article, a new setup for in situ monitoring of biofilms by photoacoustic spectroscopy is presented. To produce a biofilm, a mixture of microorganisms was grown in a nutrient solution inside a tube reactor. The content of the tube reactor was pumped through a flow channel, and biofilms were generated at the inner surfaces. Three photoacoustic sensor heads were integrated at different positions into the base plate of the flow channel. By photoacoustic spectroscopy, growth, thickness, and detachment of biofilms can be monitored on-line and nondestructively. Experiments presented in this article showed that the flow conditions influence the structure and thickness of biofilms. By changing the pH value, electrostatic interactions inside the biofilm matrix were influenced, and the subsequent detachment processes were observed online. The interaction of iron(III) oxide particles with biofilms led to particle adsorption on the outer and inner surfaces of the biofilm. Afterwards, biofilm flocs were sloughed off from the base biofilm.

Strategies for the analysis of coal by laser ablation inductively coupled plasma mass spectroscopy.

The potential of laser ablation inductively coupled mass spectrometry (LA-ICP-MS) was investigated for the inorganic characterization of different coal samples pressed into pellets. Reference analysis was performed by microwave-assisted digestion of the ground samples followed by ICP-MS analysis of the resulting solutions. Two different laser ablation sampling procedures were compared. For continuous sampling, three sites of the pellet were sampled for approximately one minute, whereas for sequential sampling 15 sites were sampled for two seconds, respectively. The qualitative results of the two procedures were equivalent, but continuous sampling allowed faster analysis and better precision (RSD about 10%) than sequential sampling (RSD 10-20%). Different normalization procedures with internal and extrinsic standards were investigated and allowed a quantitative determination of Al, Ti, Zn, Ni, and V with measurement uncertainties below 10% and Fe, Si, and Sn with measurement uncertainties below 20%.