Prognostic Factors for Residual Lithiasis in Patients With Staghorn Calculi Undergoing Percutaneous Nephrolithotomy in the Maya Region of Yucatan, Mexico: A Case-Control Study.

BACKGROUND: Yucatan stands out as the state with the highest prevalence of urolithiasis in Mexico, placing significant demands on healthcare services, such as consultation and surgical intervention. Staghorn calculi are related to recurrent urinary tract infections, and their management is always surgical. The stone-free rate is a parameter used to measure the success of surgery, with residual stones considered those persisting four weeks after surgical management. There are understudied prognostic factors that can predict the success of achieving stone-free status, taking into account the number of stones, their location, and the anatomical variations of the patient's collecting system. The study aims to determine the prognostic factors for residual lithiasis in patients with staghorn calculi treated with percutaneous nephrolithotomy at the High Specialty Regional Hospital of the Yucatan Peninsula. METHODS: A case-control study was performed including 188 patients, aged 18 years or older, and diagnosed with staghorn calculus from January 2022 to June 2023, grouping the patients according to their stone-free rate evidence on postoperative computed tomography. Data were collected from the records of the Urology Department at a high-specialty hospital in Yucatan. The groups were analyzed, aiming to establish an association between preoperative factors and postoperative outcomes measured in terms of stone-free rate. RESULTS: A total of 188 patients with staghorn calculi were included, with a predominance in females (58.5%) and a mean age of 45.4 ± 11.9 years. The most common comorbidity was hypertension (29.8%), and 27.7% had a history of recurrent urinary tract infections. Regarding the Sampaio classification, B1 was the most prevalent in our population with 66 cases (35.1%), while Type A2 was the least common (13.8%). According to what was obtained through the multivariate logistic regression model, the calyceal anatomy Type A1 and A2 were associated with residual lithiasis (p= 0.016 OR: 2.994 CI: 1.223-7.331), and Grade IV was associated with a higher rate of residual lithiasis (p=0.005 CI: 1.586-13.100). A statistically significant association was found between stone burden and the presence of residual lithiasis (p=< 0.001). CONCLUSION: Guy's Score Grade IV showed a higher incidence of residual lithiasis, seemingly associated with stone burden, leading to the conclusion that both factors were categorized as predictors for the development of post-surgical residual lithiasis. Regarding anatomical variations according to Sampaio, it was observed that types A1 and A2 showed a lower rate of stone-free status. Therefore, we also consider them as variables that may influence the achievement of success in endourological management. Personalized patient assessment allows for more accurate prognostic factors, enabling a more comprehensive surgical planning in the presence of staghorn calculi.

An amplicon-based protocol for whole-genome sequencing of human respiratory syncytial virus subgroup A.

It is convenient to study complete genome sequences of human respiratory syncytial virus (hRSV) for ongoing genomic characterization and identification of highly transmissible or pathogenic variants. Whole genome sequencing of hRSV has been challenging from respiratory tract specimens with low viral loads. Herein, we describe an amplicon-based protocol for whole genome sequencing of hRSV subgroup A validated with 24 isolates from nasopharyngeal swabs and infected cell cultures, which showed cycle threshold (Ct) values ranging from 10 to 31, as determined by quantitative reverse-transcription polymerase chain reaction. MinION nanopore generated 3200 to 5400 reads per sample to sequence over 93% of the hRSV-A genome. Coverage of each contig ranged from 130× to 200×. Samples with Ct values of 20.9, 25.2, 27.1, 27.7, 28.2, 28.8, and 29.6 led to the sequencing of over 99.0% of the virus genome, indicating high genome coverage even at high Ct values. This protocol enables the identification of hRSV subgroup A genotypes, as primers were designed to target highly conserved regions. Consequently, it holds potential for application in molecular epidemiology and surveillance of this hRSV subgroup.

Elevated Levels of Cytotoxicity, Cytokines, and Anti-SARS-CoV-2 Antibodies in Mild Cases of COVID-19.

Current evidence shows higher production of cytokines and antibodies against severe acute respiratory coronavirus 2 (SARS-CoV-2) in severe and critical cases of Coronavirus Disease 2019 (COVID-19) in comparison with patients with moderate or mild disease. A recent hypothesis proposes an important role of genotoxicity and cytotoxicity in the induction of the cytokine storm observed in some patients at later stages of the disease. Interestingly, in this study, we report significantly higher levels of interleukin (IL)-1ß, IL-6, MCP-1, and IL-4 cytokines in mild COVID-19 patients versus severe cases, as well as a high frequency of karyorrhexis (median [Me] = 364 vs. 20 cells) and karyolysis (Me = 266 vs. 52 cells) in the mucosal epithelial cells of both groups of patients compared with uninfected individuals. Although we observed higher levels of anti-SARS-CoV-2 IgM and IgG antibodies in COVID-19 patients, IgM antibodies were significantly higher only in mild cases, for the N and the S viral antigens. High levels of IgG antibodies were observed in both mild and severe cases. Our results showed elevated concentrations of proinflammatory and anti-inflammatory cytokines in mild cases, which may reflect an active innate immune response and could be related to the higher IgM and IgG antibody levels found in those patients. In addition, we found that SARS-CoV-2 infection induces cytotoxic damage in the oral mucosa, highlighting the importance of studying the genotoxic and cytotoxic events induced by infection and its role in the pathophysiology of COVID-19.

Identification and molecular characterization of Orfvirus infection in occupationally exposed women inSouth America

Abstract Contagious Ecthyma (CE) is a severe exanthematous dermatitis caused by the Orf virus (ORFV) that mainly affects domestic small ruminants such as sheep and goats. It is a worldwide-distributed occupational zoonosis, particularly infecting those in close contact with animals or animal products such as shepherds, farmers and veterinarians, among others. In the present work, we report the first human CE case confirmed in Argentina. A phylogenetic analysis based on four gene sequences of the isolated strain responsible for the disease showed that this isolate grouped with other ORFV sequences that caused reported CE cases in sheep from the same Argentine province. We also sequenced a sample from a Chilean human case reported in 2017, whose phylogenetic analysis showed that it groups together with other Argentine isolates from locations close to the border with Chile. Keywords: Contagious Ecthyma; Dermatitis; Human Orf; Zoonosis; Molecular characterization.

Resumen El ectima contagioso (EC) es una dermatitis exantemática grave causada por el virus Orf (ORFV), que afecta mayormente a pequeños rumiantes domésticos, como ovinos y caprinos. Es una zoonosis ocupacional con distribución mundial, infecta a humanos en estrecho contacto con animales o sus productos, como granjeros, esquiladores y veterinarios, entre otros. En este trabajo se informa el primer caso humano de EC confirmado en Argentina. Un análisis filogenético basado en cuatro genes de la cepa responsable de este caso mostró que el aislamiento agrupa con otras secuencias de ORFV que causaron casos en ovinos en la misma provincia argentina. También se secuenció una muestra del caso de ectima humano reportado en Chile en 2017 y el análisis filogenético mostró que dicho aislamiento forma un grupo con otros aislamientos argentinos de localidades cercanas a la frontera con Chile. Palabras clave: Ectima contagioso; Dermatitis; Orf en humanos; Zoonosis; Caracterización molecular.

Persistence of RNA Viruses in the Respiratory Tract: An Overview.

Respiratory RNA viruses are a major cause of acute lower respiratory tract infections and contribute substantially to hospitalization among infants, elderly, and immunocompromised. Complete viral clearance from acute infections is not always achieved, leading to persistence. Certain chronic respiratory diseases like asthma and chronic obstructive pulmonary disease have been associated with persistent infection by human respiratory syncytial virus and human rhinovirus, but it is still not clear whether RNA viruses really establish long-term infections as it has been recognized for DNA viruses as human bocavirus and adenoviruses. Herein, we summarize evidence of RNA virus persistence in the human respiratory tract, as well as in some animal models, to highlight how long-term infections might be related to development and/or maintenance of chronic respiratory symptoms.

Identification and molecular characterization of Orf virus infection in occupationally exposed women in South America.

Contagious Ecthyma (CE) is a severe exanthematous dermatitis caused by the Orf virus (ORFV) that mainly affects domestic small ruminants such as sheep and goats. It is a worldwide-distributed occupational zoonosis, particularly infecting those in close contact with animals or animal products such as shepherds, farmers and veterinarians, among others. In the present work, we report the first human CE case confirmed in Argentina. A phylogenetic analysis based on four gene sequences of the isolated strain responsible for the disease showed that this isolate grouped with other ORFV sequences that caused reported CE cases in sheep from the same Argentine province. We also sequenced a sample from a Chilean human case reported in 2017, whose phylogenetic analysis showed that it groups together with other Argentine isolates from locations close to the border with Chile.

Heat flux in chains of nonlocally coupled harmonic oscillators: Mean-field limit.

We consider one-dimensional systems of all-to-all harmonically coupled particles with arbitrary masses, subject to two Langevin thermal baths. The couplings correspond to the mean-field limit of long-range interactions. Additionally, the particles can be subject to a harmonic on-site potential to break momentum conservation. Using the nonequilibrium Green's operator formalism, we calculate the transmittance, the heat flow, and local temperatures for arbitrary configurations of masses. For identical masses, we show analytically that the heat flux decays with the system size N as 1/N regardless of the conservation or not of the momentum and of the introduction or not of a Kac factor. These results describe, in good agreement, the thermal behavior of systems with small heterogeneity in the masses.

Hipokalemia de gradiente transtubular alto: una propuesta práctica para su enfoque / High transtubular gradient hypokalemia: a practical proposal for its focus

Resumen El potasio es un ion de predominio intracelular involucrado en múltiples funciones esenciales para mantener la homeostasis celular. Por lo anterior, sus concentraciones a nivel plasmático se encuentran estrechamente reguladas mediante el sistema renal y endocrino, además de estar afectado ante situaciones como la acidosis, cambios en la osmolaridad plasmática y concentración de otros electrolitos. La hipokalemia es un trastorno electrolítico común en la práctica clínica causado por el aporte inadecuado o pérdidas excesivas. Su enfoque diagnóstico requiere de una apropiada historia clínica que incluya antecedentes personales patológicos, farmacológicos, y un examen físico detallado con determinación del estado de volemia e hidratación del paciente, así como la medición de otros electrolitos a nivel plasmático y ocasionalmente en orina. El gradiente transtubular de potasio es una herramienta útil para direccionar posibles causas. Dentro de las causas de hipokalemia de gradiente transtubular elevado se encuentra el síndrome de Bartter.

Abstract Potassium is a predominantly intracellular ion involved in multiple essential functions to maintain cellular homeostasis. Therefore, its variations at the plasma level are tightly regulated by the renal and the endocrine systems; in addition to being affected by situations such as acidosis, changes in plasma osmolality and concentration of another electrolytes. Hypokalemia is a common electrolyte disorder in clinical practice affected by reporting excessive damage or loss. Its diagnostic approach requires a complete medical record that includes personal pathological and pharmacological information, a specific physical examination with certain conditions like patient's blood volume and hydration status, as well as the measurement of other electrolytes at the plasma level and occasionally in urine. The transtubular potassium gradient is a useful tool to address possible causes. Bartter syndrome is one of the causes of elevated transtubular gradient hypokalemia.

Repercusión de la pandemia COVID-19 en la práctica de la cardiología intervencional en Chile: datos aportados por la encuesta del grupo Stent-Save a Life! LATAM working group / Decrease in the activity of interventional cardiology in Chile: a report from the "Stent-Save a Life! LATAM working group"

RESUMEN: Introducción: El Stent-Save a Life! (SSL) LATAM working group diseñó una encuesta para objetivar la reducción de la actividad de los laboratorios de hemodinamia en Latinoamérica durante la pandemia COVID-19. Ante la amenaza de nuevos confinamientos en Chile, nos propusimos objetivar las consecuencias de la primera ola de contagios en nuestra actividad. Objetivos: Discutir la repercusión de la pandemia en la cardiología intervencional en Chile. Métodos: El grupo SSL realizó una encuesta telemática a todos los países de Latinoamérica incluido Chile. Se registraron las coronariografías (CAG), intervenciones coronarias percutáneas (ACTP) e intervenciones estructurales, comparando dos períodos determinados por el confinamiento por la pandemia, cada uno de dos semanas. Pre-COVID-19: período previo al confinamiento, y COVID-19: período durante el confinamiento. Se analizan, a partir de esta encuesta, los resultados aplicados a nuestro país. Resultados: Se obtuvo respuesta de trece centros. Hubo una reducción en el número global de procedimientos entre período Pre-COVID-19 y COVID-19 de un 65,1%. Se reportó una disminución de 67% en las CAG, de un 59,4% en las ACTP y de un 92% en los procedimientos terapéuticos estructurales. Entre ambos períodos se redujo la consulta por Síndrome Coronario Agudo por elevación del segmento ST (SCACEST) en 40,8%. Conclusiones: En nuestro país se objetivó una reducción marcada de la actividad asistencial de la cardiología intervencional durante la pandemia COVID-19 y una disminución significativa en el número de pacientes tratados por SCACEST. Los resultados de nuestro país son similares a los reportados por países de Latinoamérica, Europa y Norteamérica.

ABSTRACT: Background: The Stent-Save a Life! (SSL) LATAM working group designed a survey to demonstrate the reduction in the activity of cardiac catheterization laboratories in Latin America during the COVID-19 pandemic. Considering the risk of a new confinement in Chile, we decided to assess the impact of the first wave of contagions on our activity. Aims: To discuss the repercussion of the COVID-19 pandemic on the activity of interventional cardiology in Chile. Methods: The SSL group conducted a telematic survey in all Latin American countries. Coronary angiography, coronary interventions (PCI) and structural interventions were registered, comparing two periods of two weeks duration each: before and during COVID-19 confinement. Results obtained in Chile are analyzed. Results: Thirteen centers in Chile answered the survey. There was an overall decrease of 65.1% in the number of procedures between the pre and the post COVID-19 periods. Coronary angiographies decreased 67%, PCI 59.4% and therapeutical structural procedures 92%. The reduction in acute coronary syndrome with ST segment elevation (STEMI) was 40,8% between periods. Conclusions: In Chile, a significant reduction in healthcare activity related to interventional cardiology and a significant decrease in the number of patients treated with STEMI was observed during the COVID-19 pandemic. The results are similar to those reported by Latin American, European and North American countries.

Determinación de selenio en caprinos de la localidad de Peldehue, en la región metropolitana de Santiago de Chile / Selenium Determination in Goats in the Peldehue Zone, Metropolitan Area of Santiago de Chile

Resumen El selenio (Se) es un componente indispensable dentro de los sistemas antioxidantes del organismo animal, lo que permite su correcto mantenimiento y desarrollo. Por este motivo, su deficiencia se encuentra relacionada con una serie de trastornos oxidativos, que se traducen en una mala salud, reproducción y rendimiento productivo en general. El objetivo del presente estudio fue evaluar el balance metabólico nutricional de Se, a través de la medición de las concentraciones sanguíneas del mineral en un establecimiento rural ubicado en la zona central de Chile, en donde existen antecedentes de episodios de mortandad compatibles con su deficiencia. Para esto, se tomaron muestras sanguíneas de caprinos pertenecientes al establecimiento (n = 32), las cuales fueron analizadas mediante espectrofotometría de absorción atómica en el laboratorio de bioquímica de la Estación Experimental Agropecuaria del Instituto Nacional de Tecnología Agropecuaria, ubicado en Balcarce, Argentina. Se obtuvo un promedio de Se sanguíneo de 34,16 ± 14,81 ppb, en donde el 100 % de los animales analizados presentaron valores inadecuados para la especie. En el caso de los caprinos juveniles (n = 5), se obtuvo un promedio de 18,48 ± 8,51 ppb. En el ganado adulto (n = 27), los valores bordearon concentraciones de 8,12 y 63,35 ppb. Se concluye que existe una deficiencia de Se crítica en los animales muestreados pertenecientes al establecimiento ubicado en la zona central de Chile.

Abstract Selenium (Se) is a component indispensable for the antioxidant systems of animal bodies. It enables a correct maintenance and development. For this reason, a Se deficiency is associated with some oxidative disorders that result in bad health, bad reproduction and poor productive performance in general. This study aims to evaluate the Se nutritional metabolic balance by measuring the blood concentrations thereof in a farm located in Central Chile, with existing background of mortality events compatible with a Se deficiency. To do so, blood samples were taken from goats belonging to this farm (n = 32) that were subject to atomic absorption spectrophotometry at the biochemistry laboratory in the Agricultural Experimental Station, Instituto Nacional de Tecnología Agropecuaria, located in Balcarce, Argentina. Blood average Se was measured at 34.16 ± 14.81 ppb and 100% of the studied animals showed inappropriate values for this species. In the young goats (n = 5) the average value was 18.48 ± 8.51 ppb. In the adult goats (n = 27) the values were near 8.12 and 63.35 ppb. It is concluded that there is a critical Se deficiency in the sample taken from the farm located in Central Chile.

Differential in vitro effect of endogenous and exogenous nitric oxide on replication of the persistent respiratory syncytial virus genome.

Synthesis of nitric oxide (NO) is induced as an early response to viral challenges. Here, we studied effects of endogenous and exogenous NO on respiratory syncytial virus (RSV) genome replication, using a persistently RSV infected macrophage-like cell line. NO was evaluated indirectly by nitrites accumulation and it was increased in infected macrophages with respect to non-infected cells. Phagocytosis of bacteria by persistently RSV infected macrophages increased nitrites production, and under such conditions the number of RSV-genome copies decreased up to 8.7-fold, whereas chemical inhibition of the inducible-NO synthase enzyme increased viral replication 2.7-fold. Since phagocytosis activates many signaling pathways, which could contribute to viral control, we explored the individual effect of NO by using the NO donor SNAP. Intriguingly, even though SNAP raised nitrites levels up to 3-fold, the number of RSV genome copies augmented 2.3-fold. This enhancement was associated with lengthening of the G0/G1 cell cycle phase mediated by the NO donor, as evaluated by BrdU/7-AAD incorporation through flow cytometry; this phase of the cell cycle was favorable for an increased RSV genome replication. Thus, NO produced endogenously during RSV persistence was not enough to control virus replication, although macrophage activation through phagocytosis inhibited replication of the persistent viral genome. In contrast, the NO donor SNAP increased viral genome replication, at least partially by altering the cell cycle, indicating that both sources of NO were not bioequivalent.  Keywords: cell cycle; endogenous nitric oxide; exogenous nitric oxide; nitric oxide donor; respiratory syncytial virus; viral persistence.

Accesibilidad al entorno físico en instalaciones de acondicionamiento para personas con discapacidad física: una revisión integradora / Accessibility in Fitness Facilities for People with Physical Disabilities: An Integrative Review / Acessibilidade ao ambiente físico em academias de ginástica para pessoas com deficiência física: uma revisão integrativa

Resumen Introducción: las personas en condición de discapacidad están expuestas a diferentes barreras físicas o arquitectónicas que impiden su acceso a instalaciones y su participación en actividades físicas, ejercicio y deporte. Esto les dificulta obtener los beneficios que implica su práctica y conduce a un deterioro de su calidad de vida. Materiales y métodos: revisión integradora de estudios cuantitativos a través de la metodología SPIDER, con los siguientes componentes: 1) identificación del problema, 2) búsqueda de literatura, 3) evaluación de datos y 4) análisis de estos. Resultados: se incluyeron 7 estudios en los cuales se evaluaron 429 instalaciones de acondicionamiento con 4 instrumentos de medición, por medio de la puntuación media en porcentajes identificados por el tipo de accesibilidad al entorno físico (al desplazamiento y a la implementación deportiva y recreativa), donde el 0 % es la accesibilidad mínima y el 100 % es la accesibilidad máxima. En ninguno de los estudios incluidos se identificó una media mayor al 60 %. La accesibilidad a la implementación deportiva y recreativa fue la más baja, con el 19.81 %, y la accesibilidad física fue la más alta, con el 57.01 %. Conclusión: las instalaciones de acondicionamiento no son del todo accesibles para personas con discapacidad. Existe la gran necesidad de investigación en la accesibilidad a la implementación deportiva y recreativa en Latinoamérica y fundamentalmente en Colombia.

Abstract Introduction: People with disabilities are often exposed to different physical or architectural barriers that block access to their participation in physical activity, exercise, and sports. This makes it difficult for them to benefit from these facilities which lead to a deterioration in the quality of life for many individuals with disabilities. Materials and Methods: An integrative review of quantitative studies was conducted using the SPIDER methodology with the following components: (i) problem identification, (ii) literature search, (iii) data evaluation, and (iv) data analysis. Results: Seven studies were included in which 429 fitness facilities were evaluated with four measuring instruments including mean ratings in percentages identified by the type of accessibility (physical, displacement, sports and recreational implementation) and whether they were at 0% minimum accessibility or at 100% maximum accessibility. None of the studies that were included obtained a mean score greater than 60%. Accessibility to sports and recreational implementation was at the lowest with 19.81% and physical accessibility was at the highest with 57.01%. Conclusion: Fitness facilities are not entirely accessible for people with disabilities. There is a need for further research to look into accessibility of sports and recreational implementation in Latin America, especially in Colombia.

Resumo Introdução: as pessoas deficientes estão expostas a diferentes barreiras físicas ou arquitetônicas que impedem seu acesso às instalações e participação em atividade física, exercício e esporte, dificultando obter o benefício que a prática de esportes traz, o que prejudica sua qualidade de vida. Materiais e métodos: realizou-se uma revisão integrativa de estudos quantitativos através da metodologia SPIDER com os seguintes componentes: 1) identificação do problema, 2) revisão de literatura, 3) avaliação dos dados e 4) análise de dados. Resultados: foram incluídos sete estudos, nos quais se avaliaram um total de 429 academias com quatro instrumentos de medição, por meio da pontuação média em porcentagem identificada pelo tipo de acesso ao ambiente físico (física, por deslocamento, e aos implementos esportivos e recreativos), sendo 0% acessibilidade mínima e 100% acessibilidade máxima. Em nenhum dos estudos incluídos identificou-se uma média superior a 60%. A acessibilidade aos implementos esportivos e recreativos foi a mais baixa com 19,81% e a acessibilidade física foi a mais alta com 57,01%. Conclusão: as instalações das academias não são completamente acessíveis para pessoas com deficiência. Existe uma grande necessidade de investigação, principalmente na acessibilidade de implementos esportivos e recreativos na América Latina e fundamentalmente, na Colômbia.

Steady-state persistence of respiratory syncytial virus in a macrophage-like cell line and sequence analysis of the persistent viral genome.

Long-term infection by human respiratory syncytial virus (hRSV) has been reported in immunocompromised patients. Cell lines are valuable in vitro model systems to study mechanisms associated with viral persistence. Persistent infections in cell cultures have been categorized at least as in "carrier-state", where there exist a low proportion of cells infected by a lytic virus, and as in "steady-state", where most of cells are infected, but in absence of cytophatic effect. Here, we showed that hRSV maintained a steady-state persistence in a macrophage-like cell line after 120 passages, since the viral genome was detected in all of the cells analyzed by fluorescence in situ hybridization, whereas only defective viruses were identified by sucrose gradients and titration assay. Interestingly, eight percent of cells harboring the hRSV genome revealed undetectable expression of the viral nucleoprotein N; however, when this cell population was sorted by flow cytometry and independently cultured, viral protein expression was induced at detectable levels since the first post-sorting passage, supporting that sorted cells harbored the viral genome. Sequencing of the persistent hRSV genome obtained from virus collected from cell-culture supernatants, allowed assembling of a complete genome that displayed 24 synonymous and 38 nonsynonymous substitutions in coding regions, whereas extragenic and intergenic regions displayed 12 substitutions, two insertions and one deletion. Previous reports characterizing mutations in extragenic regulatory sequences of hRSV, suggested that some mutations localized at the 3' leader region of our persistent virus might alter viral transcription and replication, as well as assembly of viral nucleocapsids. Besides, substitutions in P, F and G proteins might contribute to altered viral assembly, budding and membrane fusion, reducing the cytopathic effect and in consequence, contributing to host-cell survival. Full-length mutant genomes might be part of the repertoire of defective viral genomes formed during hRSV infections, contributing to the establishment and maintenance of virus persistence.

SOS: online probability estimation and generation of T-and B-cell receptors.

SUMMARY: Recent advances in modelling VDJ recombination and subsequent selection of T- and B-cell receptors provide useful tools to analyse and compare immune repertoires across time, individuals and tissues. A suite of tools-IGoR, OLGA and SONIA-have been publicly released to the community that allow for the inference of generative and selection models from high-throughput sequencing data. However, using these tools requires some scripting or command-line skills and familiarity with complex datasets. As a result, the application of the above models has not been available to a broad audience. In this application note, we fill this gap by presenting Simple OLGA & SONIA (SOS), a web-based interface where users with no coding skills can compute the generation and post-selection probabilities of their sequences, as well as generate batches of synthetic sequences. The application also functions on mobile phones. AVAILABILITY AND IMPLEMENTATION: SOS is freely available to use at sites.google.com/view/statbiophysens/sos with source code at github.com/statbiophys/sos.

Prevención y medidas de protección frente a la infección por SARS-COV-2 / Prevention and protective measures against SARS-CoV-2 infection

The SARS-CoV-2 pandemic has become a global health problem causing severe human respiratory infections. Countries have had to establish strategies to avoid the collapse of health systems. There has been reports describing that the human-to-human transmission is through droplet spread and contact routes as through hands and contaminated surfaces. Social distancing, personal protective equipment, hand washing often, and surface disinfection play a fundamental role in disease control. Some procedures and situations aerosolize the SARS-CoV-2, so protection measures must be extreme. Hard work is underway to develop and implement a vaccine that would provide immunity to the population, but it will take some time. Preventive measures must incorporate good epidemiological monitoring that guarantees adequate control of cases and contacts in order to isolate them from the rest of the population, whether hospitalized or at home.

La pandemia de SARS-CoV-2 se ha convertido en un problema global de salud provocando infecciones respiratorias severas en humanos. Los países han tenido que establecer estrategias para evitar el colapso de los sistemas sanitarios. Se ha descrito una transmisión de persona a persona facilitada por propagación de gotitas, manos o superficies contaminadas. El distanciamiento físico, los elementos de protección personal, el lavado de manos frecuente y la desinfección de superficies cumplen un rol fundamental en el control de la enfermedad. Algunos procedimientos y situaciones aerosolizan el SARS-CoV-2 por lo que se deben extremar las medidas de protección. Se trabaja arduamente para lograr una vacuna que otorgue inmunidad a la población, pero su desarrollo va a tomar algún tiempo. Las medidas preventivas deben incorporar una buena vigilancia epidemiológica que garantice el control adecuado de los casos y contactos, con el objeto de aislarlos del resto de la población, ya sea hospitalizados o en sus domicilios.

Prevención de la infección por SARS-COV-2 en procedimientos terapéuticos y/o diagnósticos / Prevention of infection against SARS-CoV-2 in therapeutic and diagnostic procedures

The SARS-CoV-2 pandemic has spread rapidly throughout the world. Its main transmission mechanisms are through droplets and by contact with contaminated surfaces. At the in-hospital level, the formation of bioaerosols becomes important when carrying out therapeutic and diagnostic procedures, facilitating air transmission. This condition could be associated with the significant number of deceased health officials. Physical distancing, frequent hand washing, and permanent use of a mask are useful tools to control the disease. Among the aerosol-generating procedures (PGAs) are endotracheal intubation, bronchoscopy, open aspiration of secretions, nebulizations, manual ventilation, prone positioning, disconnection of the mechanical ventilator, non-invasive positive pressure ventilation, tracheostomy and cardiopulmonary resuscitation. The correct use of personal protection elements (PPE) and the realization of these in rooms with negative pressure or with frequent air changes considerably reduce the risk of becoming ill.

La pandemia del SARS-CoV-2 se ha diseminado rápidamente por el mundo. Sus principales mecanismos de transmisión son a través de gotitas y por contacto con superficies contaminadas. A nivel intrahospitalario, cobra importancia la formación de bioaerosoles al realizar procedimientos terapéuticos y de diagnóstico facilitando la transmisión aérea. Esta condición podría estar asociada al importante número de funcionarios de la salud fallecidos. El distanciamiento físico, el lavado frecuente de manos y el uso permanente de mascarilla son útiles herramientas para controlar la enfermedad. Dentro de los procedimientos generadores de aerosoles (PGAs) están la intubación endotraqueal, broncoscopía, aspiración abierta de secreciones, nebulizaciones, ventilación manual, posicionamiento en prono, desconección del ventilador mecánico, ventilación no invasiva a presión positiva, traqueostomía y reanimación cardiopulmonar. El uso correcto de los elementos de protección personal (EPP) y la realización de éstos en salas con presión negativa o con recambios frecuentes del aire disminuyen considerablemente el riesgo de enfermar.

Accidental Poisoning with Nerium Oleander in Dairy Goat in the Santiago Metropolitan Region in Chile / Intoxicación accidental con Nerium oleander en lechería caprina en la Región Metropolitana de Santiago en Chile / Intoxicação acidental com oleandro de Nerium em laticínios de cabras na região metropolitana de Santiago, no ChileResumo

Abstract A small dairy goat farm in central Chile stocked their troughs with ornamental plants and grasses, which were obtained after pruning the gardens of neighboring sectors. Twelve hours after the goats ingested this food, the farm registered a death toll of eight goats, all of which were adult females in their productive stage, before entering the milking parlor. The mortality episode lasted 84 hours and produced mortality and morbidity values of 48 and 54 percent, respectively (n = 52). During a visit to the farm, clinic inspections, autopsies, and sample tissues were obtained for microscopic analysis (the tissues specimens were fixed in 10% buffered formaldehyde solution). The clinic inspection and microscopic analysis both confirmed that the animals had cardiovascular disease. The lesions were compatible with those produced by cardiac glycosides. During the site visit, Nerium oleander was found in the troughs, which suggested that the animals were poisoned by eating this plant. There was a high presence of this plant in the poisoned area, and it was not associated with the mortality episode before the on-site visit, which indicates that the authors should conduct training and inform producers about the handling and feeding of their animals.

Resumen En establecimiento de pequeño productor caprino (n = 52) en la zona central de Chile, se les administraron en comederos plantas ornamentales y pastos que fueron obtenidos posterior a la poda de jardines en sectores aledaños. A las 12 horas post ingesta de este alimento se encuentran 8 caprinos, hembras, adultos, productivos muertos previo al ingreso a sala de ordeña. El episodio de mortandad se extendió por 84 horas generando una mortalidad del 48 % y una morbilidad del 52 %. Se realizó visita, inspección clínica, necropsia y análisis microscópico de especímenes fijados en solución formolada tamponada al 10 %. La inspección clínica confirma la presencia de animales con afección cardiovascular, al igual que el análisis microscópico. Las lesiones son compatibles con las producidas por glucósidos cardiotóxicos, al recorrer el lugar se observa la presencia de Nerium oleander en comederos de lote afectado, lo que sugiere la intoxicación de estos animales. La presencia de esta planta en la zona de la intoxicación es elevada y antes de nuestra visita no fue asociada al episodio de mortandad, lo que nos indica que se debe realizar capacitación e informar a productores sobre el manejo y alimentación de sus animales.

Resumo No estabelecimento de um pequeno produtor de cabras (n = 52) na zona central do Chile, plantas ornamentais e pastagens foram administradas em alimentadores que foram posteriormente podados por jardins em setores próximos. Às 12 horas após a ingestão deste alimento, são oito cabras, fêmeas, adultos, mortos produtivos antes de entrar na sala de ordenha. O episódio da morte prolongou-se por 84 horas, gerando uma mortalidade de 48% e uma morbidade de 52%. Foram realizadas visita, inspeção clínica, necropsia e análise microscópica das amostras fixadas em solução formolada tamponada a 10%. A inspeção clínica confirmou a presença de animais com doença cardiovascular e a análise microscópica. As lesões são compatíveis com as produzidas pelos glicosídeos cardiotóxicos, ao atravessar o local, observa-se a presença de oleandro de Nerium nos alimentadores do lote afetado, o que implica na intoxicação desses animais. A presença desta planta na zona de envenenamento é alta e, antes da nossa visita, não estava associada ao episódio da morte, o que indica que o treinamento deve ser realizado e informa os produtores sobre o manuseio e a alimentação de seus animais.

Interplay of adsorption and surface mobility in tracer diffusion in porous media.

We model the diffusion of a tracer that interacts with the internal surface of a porous medium formed by a packing of solid spheres. The tracer executes a lattice random walk in which hops from surface to bulk sites and hops on the surface have small probabilities compared to hops from bulk sites; those probabilities are related to bulk and surface diffusion coefficients and to a desorption rate. A scaling approach distinguishes three regimes of steady state diffusion, which are confirmed by numerical simulations. If the product of desorption rate and sphere diameter is large, dominant bulk residence is observed and the diffusion coefficient is close to the bulk value. If that product is small and the surface mobility is low, the tracers are adsorbed most of the time but most hops are executed in the bulk. However, for high surface mobility, there is a nontrivial regime of dominant surface displacement, since the connectivity of solid walls allows the tracers to migrate to long distances while they are adsorbed. In this regime, we observe rounded tracer paths on the sphere walls, which are qualitatively similar to those of a recent experiment on polystyrene particle diffusion. The calculated average residence times are proportional to the bulk and surface densities of an equilibrium ensemble of noninteracting tracers, and the relation between those densities sets the adsorption isotherm. Simulations performed with initially uniform (nonequilibrium) distribution of tracers in the pores show other nontrivial results in cases of dominant surface residence: slow increase of the mean-square displacement at short times, since the tracer has not explored a homogeneous medium, and a remarkable slowdown between the first encounter with a solid wall and the first hop from that point. Relations between our results and other models of diffusion and adsorption in porous media are discussed.

Nitric oxide production is downregulated during respiratory syncytial virus persistence by constitutive expression of arginase 1.

Viral persistence alters cellular antiviral activities. Nitric oxide (NO), a highly reactive free radical and a potent antiviral molecule, can inhibit replication of RNA and DNA viruses, but its production and effect during viral persistence are largely unknown. NO synthesis is stimulated in epithelial cells during acute infection with respiratory syncytial virus (RSV) and interferes with viral replication. In this study, we compared the levels of production of NO and expression of its regulatory enzymes, inducible nitric oxide synthase (NOS II) and arginase 1 (Arg-1), during acute and persistent RSV infection in a macrophage cell line to investigate their role in the control and maintenance of viral infection. We observed that NO and NOS II mRNA were induced at higher levels in acutely infected macrophages than in persistently infected macrophages, while the kinetics of NOS II protein expression were similar in both types of infected cultures, except that its disappearance was delayed during acute infection. Thus, NOS II was inducible and expressed at high levels during persistent infection, but production of NO was low relative to acute infection. This was not associated with a lack of enzymatic activity but instead was due to constitutive expression of the Arg-1 enzyme at the mRNA and protein levels, suggesting that arginase restricts availability of L-arginine as a substrate for NOS II to synthesize NO. This hypothesis was supported by showing that arginase enzymatic activity was inhibited in persistently RSV-infected cells by Nω-hydroxy-nor-L-arginine, increasing L-arginine availability in conditioned medium and producing increased levels of nitrites, concurrently with a significant reduction in virus genome replication, implying that Arg-1 overexpression contributes to the maintenance of the RSV genome in the host in persistent infection.

Publisher's Note: Role of the range of the interactions in thermal conduction [Phys. Rev. E 94, 042117 (2016)].

This corrects the article DOI: 10.1103/PhysRevE.94.042117.