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1.
Hum Mol Genet ; 33(15): 1367-1377, 2024 Jul 22.
Article in English | MEDLINE | ID: mdl-38704739

ABSTRACT

Spinal Muscular Atrophy is caused by partial loss of survival of motoneuron (SMN) protein expression. The numerous interaction partners and mechanisms influenced by SMN loss result in a complex disease. Current treatments restore SMN protein levels to a certain extent, but do not cure all symptoms. The prolonged survival of patients creates an increasing need for a better understanding of SMA. Although many SMN-protein interactions, dysregulated pathways, and organ phenotypes are known, the connections among them remain largely unexplored. Monogenic diseases are ideal examples for the exploration of cause-and-effect relationships to create a network describing the disease-context. Machine learning tools can utilize such knowledge to analyze similarities between disease-relevant molecules and molecules not described in the disease so far. We used an artificial intelligence-based algorithm to predict new genes of interest. The transcriptional regulation of 8 out of 13 molecules selected from the predicted set were successfully validated in an SMA mouse model. This bioinformatic approach, using the given experimental knowledge for relevance predictions, enhances efficient targeted research in SMA and potentially in other disease settings.


Subject(s)
Artificial Intelligence , Computational Biology , Disease Models, Animal , Muscular Atrophy, Spinal , Muscular Atrophy, Spinal/genetics , Muscular Atrophy, Spinal/metabolism , Animals , Mice , Humans , Computational Biology/methods , Survival of Motor Neuron 1 Protein/genetics , Survival of Motor Neuron 1 Protein/metabolism , Machine Learning , Algorithms , Gene Expression Regulation/genetics
2.
Swiss Dent J ; 129(11): 929-936, 2019 Nov 11.
Article in German | MEDLINE | ID: mdl-31701730

ABSTRACT

A balanced and wholesome diet provides the human organism with energy (macronutrients) and all necessary micronutrients (vitamins, minerals, proteinogenic amino acids, omega fatty acids) necessary for the maintenance of all metabolic processes. The necessary quantity and composition especially of energy-supplying macronutrients change with age due to physiological and pathological changes in the body. These age-related changes as well as corresponding recommendations for elderly patients will be summarized in the following article based on the current S3 guidelines of the German Society for Nutritional Medicine on «Clinical Nutrition in Geriatrics¼ as well as further literature and the recommendations of the German Nutrition Society. Nutrition at the terminal stage of life and special nutritional advices for persons suffering from diabetes mellitus are not discussed.


Subject(s)
Aging/physiology , Energy Intake , Micronutrients , Nutritional Status , Vitamins , Aged , Guidelines as Topic , Humans , Minerals
3.
J Histochem Cytochem ; 54(5): 593-604, 2006 May.
Article in English | MEDLINE | ID: mdl-16618944

ABSTRACT

Nidogen-1 and -2 are key components of basement membranes (BMs). Despite the presence of nidogen molecules in the parenchyma of the developing liver, no BMs are formed therein. This suggests that, in the liver, nidogens may also have functions other than BM formation. As a first step toward the elucidation of the possible cell biological functions of nidogens in the developing liver, we aimed to study their cellular origin. We localized expression of nidogen-1 and nidogen-2 on prenatal days 12, 14, and 16 in the developing mouse liver using in situ hybridization at the light and electron microscopic level and light microscopic immunohistochemistry. Our results show that nidogens are produced both in portal anlagen and in the parenchyma during liver development. In the parenchyma, transcripts can be found in hepatocytes, precursors of stellate cells, endothelial cells and, most interestingly, hematopoietic cells. Using real-time PCR, we found that the gene expression for both proteins shows a decrease from day 14 to day 16 concomitant with a decrease in the hepatic hematopoiesis. We suggest that nidogens may, to some extent, take part in the regulation of hepatic hematopoiesis.


Subject(s)
Hematopoiesis , Liver/metabolism , Membrane Glycoproteins/biosynthesis , Animals , Calcium-Binding Proteins , Cell Adhesion Molecules , Embryonic Development , Immunohistochemistry , In Situ Hybridization , Liver/cytology , Liver/embryology , Mice , Microscopy, Electron , Reverse Transcriptase Polymerase Chain Reaction
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