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1.
Br J Cancer ; 126(3): 391-400, 2022 02.
Article in English | MEDLINE | ID: mdl-35027672

ABSTRACT

Cell-free DNA (cfDNA) analysis represents a promising method for the diagnosis, treatment selection and clinical follow-up of cancer patients. Although its general methodological feasibility and usefulness has been demonstrated, several issues related to standardisation and technical validation must be addressed for its routine clinical application in cancer. In this regard, most cfDNA clinical applications are still limited to clinical trials, proving its value in several settings. In this paper, we review the current clinical trials involving cfDNA/ctDNA analysis and highlight those where it has been useful for patient stratification, treatment follow-up or development of novel approaches for early diagnosis. Our query included clinical trials, including the terms 'cfDNA', 'ctDNA', 'liquid biopsy' AND 'cancer OR neoplasm' in the FDA and EMA public databases. We identified 1370 clinical trials (FDA = 1129, EMA = 241) involving liquid-biopsy analysis in cancer. These clinical trials show promising results for the early detection of cancer and confirm cfDNA as a tool for real-time monitoring of acquired therapy resistance, accurate disease-progression surveillance and improvement of treatment, situations that result in a better quality of life and extended overall survival for cancer patients.


Subject(s)
Biomarkers, Tumor/analysis , Cell-Free Nucleic Acids/analysis , Cell-Free Nucleic Acids/metabolism , Clinical Trials as Topic/statistics & numerical data , Early Detection of Cancer/methods , Neoplasms/diagnosis , Neoplastic Cells, Circulating/pathology , Animals , Cell-Free Nucleic Acids/genetics , Humans , Neoplasms/genetics , Neoplasms/metabolism , Precision Medicine
2.
Parasitology ; 145(4): 430-442, 2018 04.
Article in English | MEDLINE | ID: mdl-27976601

ABSTRACT

We propose a taxonomic revision of the dixenous trypanosomatids currently classified as Endotrypanum and Leishmania, including parasites that do not fall within the subgenera L. (Leishmania) and L. (Viannia) related to human leishmaniasis or L. (Sauroleishmania) formed by leishmanias of lizards: L. colombiensis, L. equatorensis, L. herreri, L. hertigi, L. deanei, L. enriettii and L. martiniquensis. The comparison of these species with newly characterized isolates from sloths, porcupines and phlebotomines from central and South America unveiled new genera and subgenera supported by past (RNA PolII gene) and present (V7V8 SSU rRNA, Hsp70 and gGAPDH) phylogenetic analyses of the organisms. The genus Endotrypanum is restricted to Central and South America, comprising isolates from sloths and transmitted by phlebotomines that sporadically infect humans. This genus is the closest to the new genus Porcisia proposed to accommodate the Neotropical porcupine parasites originally described as L. hertigi and L. deanei. A new subgenus Leishmania (Mundinia) is created for the L. enriettii complex that includes L. martiniquensis. The new genus Zelonia harbours trypanosomatids from Neotropical hemipterans placed at the edge of the Leishmania-Endotrypanum-Porcisia clade. Finally, attention is drawn to the status of L. siamensis and L. australiensis as nomem nudums.


Subject(s)
Leishmania/genetics , Phylogeny , Trypanosomatina/classification , Animals , Central America/epidemiology , Genes, Protozoan , Humans , Leishmaniasis/epidemiology , Leishmaniasis/parasitology , Leishmaniasis/transmission , Lizards/parasitology , Molecular Typing , Porcupines/parasitology , Psychodidae/parasitology , RNA, Ribosomal/genetics , Sloths/parasitology , South America/epidemiology , Trypanosomatina/genetics
3.
Genet Mol Res ; 13(2): 3218-27, 2014 Apr 25.
Article in English | MEDLINE | ID: mdl-24841654

ABSTRACT

Oriental melon (Cucumis melo L. var. makuwa) is an important fruit for human consumption. However, this plant species is one of the most recalcitrant to genetic transformation. The lack of an efficient in vitro system limits the development of a reproducible genetic transformation protocol for Oriental melon. In this study, an efficient transgenic production method for Agrobacterium-mediated transformation using cotyledon explants of Oriental melon was developed. Cotyledon explants were pre-cultivated for two days in the dark, and the optimal conditions for transformation of melon were determined to be a bacteria concentration of OD600 0.6, inoculation for 30 min, and two days of co-cultivation. Transgenic melon plants were produced from kanamycin-resistant shoots. A total of 11 independent transgenic plants were regenerated with a transformation efficiency of 0.8% of the inoculated explants. The transgenic plants were phenotypically normal and fully fertile, which might be a consequence of the co-cultivation time.


Subject(s)
Agrobacterium tumefaciens/genetics , Cucurbitaceae/genetics , Plants, Genetically Modified/genetics , Transformation, Genetic , Cotyledon , Cucurbitaceae/growth & development , Humans , Plants, Genetically Modified/growth & development
4.
Prev Vet Med ; 110(3-4): 563-9, 2013 Jul 01.
Article in English | MEDLINE | ID: mdl-23611065

ABSTRACT

Vaccination of domestic pets is an important component of rabies control and prevention in countries where the disease is maintained in a wildlife reservoir. In Grenada, vaccine coverage rates were low, despite extensive public education and advertising of government-sponsored vaccine clinics where rabies vaccine is administered to animals at no cost to animal owners. Information was needed on reasons for decreased dog owner participation in government-funded rabies vaccination clinics. A total of 120 dog owners from 6 different parishes were asked to complete a questionnaire assessing their currently held beliefs about rabies vaccination and perception of the risk posed by rabies. Over 70% of respondents believed that problems in the organization and management of clinic sites could allow for fighting between dogs or disease spread among dogs, while 35% of owners did not believe that they had the ability or adequate help to bring their dogs to the clinic sites. Recommendations for improving vaccine coverage rates included: improved scheduling of clinic sites and dates; increased biosecurity at clinic locations; focused advertising on the availability of home visits, particularly for aggressive dogs or dogs with visible skin-related diseases such as mange; and the recruitment of community volunteers to assist with bringing dogs to the clinic sites.


Subject(s)
Dog Diseases/prevention & control , Health Knowledge, Attitudes, Practice , Rabies/veterinary , Vaccination/psychology , Adolescent , Adult , Aged , Animals , Dogs , Female , Grenada , Humans , Male , Middle Aged , Rabies/prevention & control , Surveys and Questionnaires , Vaccination/veterinary , Young Adult
5.
Eur J Prev Cardiol ; 19(4): 755-64, 2012 Aug.
Article in English | MEDLINE | ID: mdl-21551215

ABSTRACT

AIMS: In an international prospective cohort study we assessed the relationship between glucose levels and incident cardiovascular events and death. METHODS AND RESULTS: 18,990 men and women were screened for entry into the DREAM clinical trial from 21 different countries. All had clinical and biochemical information collected at baseline, including an oral glucose tolerance test (OGTT), and were prospectively followed over a median (IQR) of 3.5 (3.0-4.0) years for incident cardiovascular (CV) events including coronary artery disease (CAD), stroke, congestive heart failure (CHF) requiring hospitalization, and death. After OGTT screening, 8000 subjects were classified as normoglycaemic, 8427 had impaired fasting glucose (IFG) or impaired glucose tolerance (IGT), and 2563 subjects had newly diagnosed type 2 diabetes mellitus (DM). There were incident events in 491 individuals: 282 CAD, 54 strokes, 19 CHF, and 164 died. The annualized CV or death event rate was 0.79/100 person-years in the overall cohort, 0.51/100 person-years in normoglycaemics, 0.92/100 person-years among subjects with IFG and/or IGT at baseline, and 1.27/100 person-years among those with DM (p for trend <0.0001). Among all subjects, a 1 mmol/l increase in fasting plasma glucose (FPG) or a 2.52 mmol/l increase in the 2-h post-OGTT glucose was associated with a hazard ratio increase in the risk of CV events or death of 1.17 (95% CI 1.13-1.22). CONCLUSIONS: In this large multiethnic cohort, the risk of CV events or death increased progressively among individuals who were normoglycaemic, IFG or IGT, and newly diagnosed diabetics. A 1 mmol/l increase in FPG was associated with a 17% increase in the risk of future CV events or death. Therapeutic or behavioural interventions designed to either prevent glucose levels from rising, or lower glucose among individuals with dysglycaemia should be evaluated.


Subject(s)
Blood Glucose/analysis , Cardiovascular Diseases/epidemiology , Glucose Metabolism Disorders/epidemiology , Adult , Aged , Aged, 80 and over , Analysis of Variance , Asia/epidemiology , Biomarkers/blood , Cardiovascular Diseases/diagnosis , Cardiovascular Diseases/mortality , Diabetes Mellitus, Type 2/blood , Diabetes Mellitus, Type 2/diagnosis , Diabetes Mellitus, Type 2/epidemiology , Europe/epidemiology , Female , Glucose Intolerance/blood , Glucose Intolerance/diagnosis , Glucose Intolerance/epidemiology , Glucose Metabolism Disorders/blood , Glucose Metabolism Disorders/diagnosis , Glucose Metabolism Disorders/mortality , Glucose Tolerance Test , Humans , Incidence , Logistic Models , Male , Middle Aged , North America/epidemiology , Odds Ratio , Prognosis , Proportional Hazards Models , Prospective Studies , Risk Assessment , Risk Factors , South America/epidemiology , Time Factors , Up-Regulation
6.
Eur J Prev Cardiol ; 19(4): 755-764, 2012.
Article in English | Sec. Est. Saúde SP, SESSP-IDPCPROD, Sec. Est. Saúde SP | ID: biblio-1062625

ABSTRACT

AIMS: In an international prospective cohort study we assessed the relationship between glucose levels and incident cardiovascular events and death.METHODS AND RESULTS: 18,990 men and women were screened for entry into the DREAM clinical trial from 21 different countries. All had clinical and biochemical information collected at baseline, including an oral glucose tolerance test (OGTT), and were prospectively followed over a median (IQR) of 3.5 (3.0-4.0) years for incident cardiovascular (CV) events including coronary artery disease (CAD), stroke, congestive heart failure (CHF) requiring hospitalization, and death. After OGTT screening, 8000 subjects were classified as normoglycaemic, 8427 had impaired fasting glucose (IFG) or impaired glucose tolerance (IGT), and 2563 subjects had newly diagnosed type 2 diabetes mellitus (DM). There were incident events in 491 individuals: 282 CAD, 54 strokes, 19 CHF, and 164 died. The annualized CV or death event rate was 0.79/100 person-years in the overall cohort, 0.51/100 person-years in normoglycaemics, 0.92/100 person-years among subjects with IFG and/or IGT at baseline, and 1.27/100 person-years among those with DM (p for trend <0.0001). Among all subjects, a 1 mmol/l increase in fasting plasma glucose (FPG) or a 2.52 mmol/l increase in the 2-h post-OGTT glucose was associated with a hazard ratio increase in the risk of CV events or death of 1.17 (95% CI 1.13-1.22).CONCLUSIONS: In this large multiethnic cohort, the risk of CV events or death increased progressively among individuals who were normoglycaemic, IFG or IGT, and newly diagnosed diabetics. A 1 mmol/l increase in FPG was associated with a 17% increase in the risk of future CV events or death. Therapeutic or behavioural interventions designed to either prevent glucose levels from rising, or lower glucose among individuals with dysglycaemia should be evaluated.


Subject(s)
Epidemiology , Glucose , Myocardial Infarction
7.
J Parasitol ; 96(3): 482-90, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20557191

ABSTRACT

We describe the distribution and abundance of the brain-encysting trematode Euhaplorchis californiensis and its second intermediate host, the California killifish (Fundulus parvipinnis), in 3 estuaries in southern California and Baja California. We quantified the density of fish and metacercariae at 13-14 sites per estuary and dissected 375 killifish. Density (numbers and biomass) was examined at 3 spatial scales, i.e., small replicate sites, habitats, and entire estuaries. At those same scales, factors that might influence metacercaria prevalence, abundance, and aggregation in host individuals and populations were also examined. Metacercaria prevalence was 94-100% among the estuaries. Most fish were infected with 100s to 1,000s of E. californiensis metacercariae, with mean abundance generally increasing with host size. Although body condition of fish did not vary among sites or estuaries, the abundance of metacercariae varied significantly among sites, habitats, estuaries, and substantially with host size and gender. Metacercariae were modestly aggregated in killifish (k > 1), with aggregation decreasing in larger hosts. Across the 3 estuaries, the total populations of killifish ranged from 9,000-12,000 individuals/ha and from 7-43 kg/ha. The component populations of E. californiensis metacercariae ranged from 78-200 million individuals/ha and from 0.1-0.3 kg/ha. Biomass of E. californiensis metacercariae constituted 0.5-1.7% of the killifish biomass in the estuaries. Our findings, in conjunction with previously documented effects of E. californiensis, suggest a strong influence of this parasite on the size, distribution, biomass, and abundance of its killifish host.


Subject(s)
Brain/parasitology , Ecosystem , Fish Diseases/parasitology , Fundulidae/parasitology , Trematoda/physiology , Trematode Infections/veterinary , Animals , Biomass , Brain Diseases/parasitology , Brain Diseases/veterinary , California/epidemiology , Female , Fish Diseases/epidemiology , Linear Models , Logistic Models , Male , Mexico/epidemiology , Prevalence , Snails , Trematoda/growth & development , Trematode Infections/epidemiology , Trematode Infections/parasitology
8.
Infect Genet Evol ; 10(4): 522-9, 2010 May.
Article in English | MEDLINE | ID: mdl-20156599

ABSTRACT

We characterized four Brazilian trypanosomes isolated from domestic rats and three from captive non-human primates that were morphologically similar to T. lewisi, a considered non-pathogenic species restricted to rodents and transmitted by fleas, despite its potential pathogenicity for infants. These isolates were identified as T. lewisi by barcoding using V7V8 SSU rDNA sequences. In inferred phylogenetic trees, all isolates clustered tightly with reference T. lewisi and T. lewisi-like trypanosomes from Europe, Asia and Africa and despite their high sequence conservation formed a homogeneous clade separate from other species of the subgenus T. (Herpetosoma). With the aim of clearly resolving the relationships between the Brazilian isolates from domestic rats and primates, we compared sequences from more polymorphic ITS rDNA. Results corroborated that isolates from Brazilian rats and monkeys were indeed of the same species and quite close to T. lewisi isolates of humans and rats from different geographical regions. Morphology of the monkey isolates and their behaviour in culture and in experimentally infected rats were also compatible with T. lewisi. However, infection with T. lewisi is rare among monkeys. We have examined more than 200 free-ranging and 160 captive monkeys and found only three infected individuals among the monkeys held in captivity. The findings of this work suggest that proximity of monkeys and infected rats and their exposure to infected fleas may be responsible for the host switching of T. lewisi from their natural rodent species to primates. This and previous studies reporting T. lewisi in humans suggest that this trypanosome can cause sporadic and opportunistic flea-borne infection in primates.


Subject(s)
Haplorhini/parasitology , Rats, Wistar/parasitology , Trypanosoma lewisi/physiology , Trypanosomiasis/veterinary , Animals , Brazil , DNA, Protozoan , DNA, Ribosomal Spacer , Evolution, Molecular , Mice , Mice, Inbred BALB C , Microscopy , Phylogeny , Rats , Trypanosoma lewisi/cytology , Trypanosoma lewisi/genetics , Trypanosoma lewisi/growth & development , Trypanosomiasis/parasitology
9.
Diabetes Res Clin Pract ; 87(1): 4-14, 2010 Jan.
Article in English | MEDLINE | ID: mdl-19896746

ABSTRACT

AIM: We estimated the number of people worldwide with diabetes for the years 2010 and 2030. METHODS: Studies from 91 countries were used to calculate age- and sex-specific diabetes prevalences, which were applied to national population estimates, to determine national diabetes prevalences for all 216 countries for 2010 and 2030. Studies were identified using Medline, and contact with all national and regional International Diabetes Federation offices. Studies were included if diabetes prevalence was assessed using a population-based methodology, and was based on World Health Organization or American Diabetes Association diagnostic criteria for at least three separate age-groups within the 20-79 year range. Self-report or registry data were used if blood glucose assessment was not available. RESULTS: The world prevalence of diabetes among adults (aged 20-79 years) will be 6.4%, affecting 285 million adults, in 2010, and will increase to 7.7%, and 439 million adults by 2030. Between 2010 and 2030, there will be a 69% increase in numbers of adults with diabetes in developing countries and a 20% increase in developed countries. CONCLUSION: These predictions, based on a larger number of studies than previous estimates, indicate a growing burden of diabetes, particularly in developing countries.


Subject(s)
Diabetes Mellitus/epidemiology , Global Health , Adult , Africa/epidemiology , Age Factors , Aged , Europe/epidemiology , Female , Forecasting , Humans , Male , Middle Aged , Middle East/epidemiology , Models, Statistical , North America/epidemiology , Predictive Value of Tests , Prevalence , Sex Characteristics , South America/epidemiology , Young Adult
10.
Anim. Reprod. (Online) ; 6(1): 96-113, January/March 2009. tab
Article in English | VETINDEX | ID: biblio-1461581

ABSTRACT

Ovarian cryobanking has considerable potential for fertility preservation and restoration and has been used to establish term pregnancies in mice, rats, sheep and humans, yet there is scope for progress towards in vitro and in vivo strategies to A) screen and improve outcomes of cryopreservation procedures and to minimize ischemic damage following grafting, B) monitor folliculogenesis and hormonal feedback, C) screen for, and remove, malignant cells, D) generate antral follicles containing normal mature fertilizable oocytes even when orthotopic autografting is not possible, and E) combine ovarian cryopreservation with more advanced reproductive technologies such as nuclear transfer (for animals only). In species such as mice a very diverse range of both cryopreservation and grafting strategies (including xenografting) has successfully generated live young. Human ovarian grafting is still a rare procedure and it is therefore encouraging that several babies have now been born. Progress has been slowest for species where compatible recipients are seldom available, such as with rare and endangered species. For these, further significant breakthroughs will be needed before cryobanked material can be reliably and efficiently used to generate new offspring.


Subject(s)
Female , Cryopreservation/classification , Ovarian Follicle/embryology , Tissue Transplantation/adverse effects , Reproductive Techniques, Assisted/classification , Cryopreservation , Ovarian Follicle/transplantation , Reproductive Techniques, Assisted
11.
Anim. Reprod. ; 6(1): 96-113, January/March 2009. tab
Article in English | VETINDEX | ID: vti-5978

ABSTRACT

Ovarian cryobanking has considerable potential for fertility preservation and restoration and has been used to establish term pregnancies in mice, rats, sheep and humans, yet there is scope for progress towards in vitro and in vivo strategies to A) screen and improve outcomes of cryopreservation procedures and to minimize ischemic damage following grafting, B) monitor folliculogenesis and hormonal feedback, C) screen for, and remove, malignant cells, D) generate antral follicles containing normal mature fertilizable oocytes even when orthotopic autografting is not possible, and E) combine ovarian cryopreservation with more advanced reproductive technologies such as nuclear transfer (for animals only). In species such as mice a very diverse range of both cryopreservation and grafting strategies (including xenografting) has successfully generated live young. Human ovarian grafting is still a rare procedure and it is therefore encouraging that several babies have now been born. Progress has been slowest for species where compatible recipients are seldom available, such as with rare and endangered species. For these, further significant breakthroughs will be needed before cryobanked material can be reliably and efficiently used to generate new offspring.(AU)


Subject(s)
Female , Cryopreservation/classification , Ovarian Follicle/embryology , Tissue Transplantation/adverse effects , Reproductive Techniques, Assisted/classification , Cryopreservation , Ovarian Follicle/transplantation , Reproductive Techniques, Assisted
12.
Braz. j. phys. ther. (Impr.) ; 12(5): 339-350, set.-out. 2008. ilus
Article in English | LILACS | ID: lil-499902

ABSTRACT

BACKGROUND: Muscle-based perception of the spatial properties of limbs constrains the patterning, timing and magnitude of muscle forces while performing motor activities. The centrality of muscle-based perception to both ordinary and skilled actions warrants attention from the rehabilitation community, since deficits in its functioning would be related to important functional limitations. In this overview, we summarize a body of research that may be used to guide the development of effective assessment tools and rehabilitation programs that are specifically directed towards such deficits. OBJECTIVES: There were four specific aims: first, to present an information-based approach to muscle-based perception that is grounded in physical laws; second to identify central principles underlying muscle-based perception that have been revealed and supported by empirical work; third, to summarize reports that have investigated whether the principles identified can be generalized to muscle-based perception in individuals with sensory-motor impairments; and fourth to provide a preliminary discussion of the potential implications of the research presented here for issues relating to rehabilitation.


INTRODUÇÃO: A percepção muscular das propriedades espaciais dos membros restringe o padrão, período e magnitude das forças exercidas durante a execução de atividades motoras. A importância central da percepção muscular, tanto para ações rotineiras quanto para ações especializadas, merece atenção da comunidade envolvida na área de reabilitação, uma vez que alterações em suas funções podem estar relacionadas a importantes limitações funcionais. Nesta revisão, os autores apresentam um resumo da pesquisa que pode ser utilizada para guiar o desenvolvimento de ferramentas de avaliação eficazes bem como programas de reabilitação que sejam especificamente direcionados para estas disfunções. OBJETIVOS: Quatro pontos específicos foram incluídos: primeiro, a apresentação da abordagem com base em informações relativas à percepção muscular de acordo com as leis da física; segundo, a identificação dos princípios centrais determinantes da percepção muscular que vem sendo revelada e apoiada por trabalhos empíricos; terceiro, um resumo dos relatos que investigaram e se os princípios identificados poderiam ser generalizados para a percepção muscular dos indivíduos com alterações motoras e sensitivas; e quarto, uma discussão preliminar sobre as implicações potenciais da pesquisa aqui apresentada, no tocante aos assuntos relacionados à reabilitação.

13.
Ann Trop Med Parasitol ; 101(8): 681-8, 2007 Dec.
Article in English | MEDLINE | ID: mdl-18028729

ABSTRACT

Although American cutaneous leishmaniasis (ACL) is one of the most important endemic diseases in the Brazilian state of Rondônia, there is very little information on the species of parasite involved. The objective of the present study was to identify the Leishmania species causing ACL in the Monte Negro municipality of the state. Over a 6-year period (1997-2002), the skin lesions of 233 patients were examined while the patients were attending an outpatients' clinic at the University of São Paulo's Advanced Research Unit in Monte Negro. ACL was diagnosed in 137 (58.8%) of the patients and leishmanial parasites were successfully isolated from 14 of the ACL cases. Using a panel of 24 monoclonal antibodies, 12 of the 14 isolates were identified, as L. (Viannia) braziliensis (seven), L. (V.) lainsoni (one), a L. (V.) lainsoni-like species (two), a L. (V.) guyanensis-like species (one), or a L. (Viannia) species that was different from all named species (one). These are the first records of human infection with L. (V.) braziliensis and L. (V.) lainsoni in Rondônia.


Subject(s)
Antibodies, Monoclonal , Leishmania/isolation & purification , Leishmaniasis, Cutaneous/parasitology , Animals , Brazil/epidemiology , Female , Humans , Leishmania/classification , Leishmaniasis, Cutaneous/epidemiology , Male
14.
Genes Immun ; 8(1): 84-90, 2007 Jan.
Article in English | MEDLINE | ID: mdl-17122780

ABSTRACT

A genome-wide scan was conducted for visceral leishmaniasis (VL) in Brazil. Initially, 405 markers were typed in 22 multicase pedigrees (28 nuclear families; 174 individuals; 66 affected). Non-parametric multipoint analysis detected nine chromosomal regions with provisional evidence (logarithm of the odds (LOD) scores 0.95-1.66; 0.003

Subject(s)
Genetic Predisposition to Disease , Genome, Human , Leishmaniasis, Visceral/genetics , Leishmaniasis, Visceral/immunology , Brazil , Chemokine CCL1 , Chemokines, CC/genetics , Humans , Linkage Disequilibrium , Polymorphism, Single Nucleotide
15.
In. Instituto Evandro Chagas (Ananindeua). Memórias do Instituto Evandro Chagas. Ananindeua, IEC, 2006. p.317-322. (Produção Cientifica, 8).
Monography in English | LILACS | ID: lil-583705
16.
Parasitology ; 129(Pt 5): 549-61, 2004 Nov.
Article in English | MEDLINE | ID: mdl-15552400

ABSTRACT

Phylogenetic relationships among Trypanosoma rangeli isolates from man, wild mammals and triatomine bugs from widespread geographical origin were inferred by comparison of the small subunit of ribosomal gene sequences. The phylogenetic trees indicated that the subgenus Herpetosoma is polyphyletic and strongly supported division of this group into two monophyletic lineages, one made up of T. rangeli, T. rangeli-like and allied species and other consisting of T. lewisi and related taxa. Based on phylogenetic analysis, morphology, behaviour in vertebrate and invertebrate hosts and epidemiology we propose: a) the validation of Herpetosoma as a taxon comprised only for species of group lewisi and the maintenance of T. lewisi as the type-species of this subgenus; b) the classification of T. rangeli, T. rangeli-like and allied species into a 'T. rangeli-clade' more closely related to Schizotrypanum than to T. lewisi or T. brucei. The phylogenetic tree disclosed at least 4 groups within the clade T. rangeli, all confirmed by polymorphism of the internal transcribed spacer, thus conferring for the first time phylogenetic support to groups of T. rangeli and corroborating the high complexity of this taxon. Grouping was independent of their mammalian host-species and geographical origin, indicating that other factors are determining this segregation.


Subject(s)
Mammals/parasitology , Polymorphism, Genetic , RNA, Protozoan/genetics , Triatominae/parasitology , Trypanosoma/classification , Animals , Animals, Wild/parasitology , Base Sequence , Gene Amplification , Humans , Phylogeny , Polymerase Chain Reaction , RNA, Ribosomal/analysis , RNA, Ribosomal/genetics , Sequence Alignment , Sequence Homology, Nucleic Acid , Species Specificity , Trypanosoma/genetics , Trypanosoma/isolation & purification , Trypanosoma lewisi/classification , Trypanosoma lewisi/genetics
17.
Parasitology ; 128(Pt 3): 283-94, 2004 Mar.
Article in English | MEDLINE | ID: mdl-15074877

ABSTRACT

We characterized 14 trypanosome isolates from sylvatic mammals (9 from primates, 1 from sloth, 2 from anteaters and 2 from opossum) plus 2 human isolates of Brazilian Amazon. These isolates were proven to be Trypanosoma rangeli by detection of metacyclic trypomastigotes in the salivary glands of triatomines and by a specific PCR assay. Polymorphism determined by randomly amplified polymorphic DNA (RAPD) revealed that most (12) of the Brazilian T. rangeli isolates from the Amazon differed from those of other geographical regions, thus constituting a new group of T. rangeli. Four Brazilian isolates clustered together with a previously described group (A) that was described as being composed of isolates from Colombia and Venezuela. Isolates from Panama and El Salvador form another group. The isolate from Southern Brazil did not cluster to any of the above-mentioned groups. This is the first study that assesses the genetic relationship of a large number of isolates from wild mammals, especially from non-human primates. A randomly-amplified DNA fragment (Tra625) exclusive to T. rangeli was used to develop a PCR assay able to detect all T. rangeli groups.


Subject(s)
Haplorhini/parasitology , Trypanosoma/genetics , Animals , Antibodies, Protozoan/blood , Base Sequence , Blotting, Southern/veterinary , Brazil , DNA, Protozoan/chemistry , DNA, Protozoan/genetics , Humans , Mice , Mice, Inbred BALB C , Molecular Sequence Data , Phylogeny , Polymerase Chain Reaction/veterinary , Random Amplified Polymorphic DNA Technique/veterinary , Sequence Analysis, DNA , Triatoma/parasitology , Trypanosoma/isolation & purification
18.
Genes Immun ; 5(1): 46-57, 2004 Jan.
Article in English | MEDLINE | ID: mdl-14735149

ABSTRACT

The region of conserved synteny on mouse chromosome 11/human 17q11-q21 is known to carry a susceptibility gene(s) for intramacrophage pathogens. The region is rich in candidates including NOS2A, CCL2/MCP-1, CCL3/MIP-1alpha, CCL4/MIP-1beta, CCL5/RANTES, CCR7, STAT3 and STAT5A/5B. To examine the region in man, we studied 92 multicase tuberculosis (627 individuals) and 72 multicase leprosy (372 individuals) families from Brazil. Multipoint nonparametric analysis (ALLEGRO) using 16 microsatellites shows two peaks of linkage for leprosy at D17S250 (Z(lr) score 2.34; P=0.01) and D17S1795 (Z(lr) 2.67; P=0.004) and a single peak for tuberculosis at D17S250 (Z(lr) 2.04; P=0.02). Combined analysis shows significant linkage (peak Z(lr) 3.38) at D17S250, equivalent to an allele sharing LOD score 2.48 (P=0.0004). To determine whether one or multiple genes contribute, 49 informative single nucleotide polymorphisms were typed in candidate genes. Family-based allelic association testing that was robust to family clustering demonstrated significant associations with tuberculosis susceptibility at four loci separated by intervals (NOS2A-8.4 Mb-CCL18-32.3 kb-CCL4-6.04 Mb-STAT5B) up to several Mb. Stepwise conditional logistic regression analysis using a case/pseudo-control data set showed that the four genes contributed separate main effects, consistent with a cluster of susceptibility genes across 17q11.2.


Subject(s)
Chromosomes, Human, Pair 17/genetics , Genetic Predisposition to Disease , Leprosy/genetics , Milk Proteins , Tuberculosis/genetics , Animals , Brazil , Case-Control Studies , Chemokine CCL3 , Chemokine CCL4 , Chemokines, CC/genetics , DNA-Binding Proteins/genetics , Female , Gene Frequency , Genetic Markers , Genetic Testing/statistics & numerical data , Genotype , Humans , Leprosy/etiology , Macrophage Inflammatory Proteins , Male , Mice , Multigene Family , Point Mutation , Proteins/genetics , STAT5 Transcription Factor , Trans-Activators/genetics , Tuberculosis/etiology , Tumor Suppressor Proteins
19.
Genes Immun ; 5(1): 63-7, 2004 Jan.
Article in English | MEDLINE | ID: mdl-14735151

ABSTRACT

Genome-wide scans were conducted for tuberculosis and leprosy per se in Brazil. At stage 1, 405 markers (10 cM map) were typed in 16 (178 individuals) tuberculosis and 21 (173 individuals) leprosy families. Nonparametric multipoint analysis detected 8 and 9 chromosomal regions respectively with provisional evidence (P<0.05) for linkage. At stage 2, 58 markers from positive regions were typed in a second set of 22 (176 individuals) tuberculosis families, with 22 additional markers typed in all families; 42 positive markers in 50 (192 individuals) new leprosy families, and 30 additional markers in all families. Three regions (10q26.13, 11q12.3, 20p12.1) retained suggestive evidence (peak LOD scores 1.31, 1.85, 1.78; P=0.007, 0.0018, 0.0021) for linkage to tuberculosis, 3 regions (6p21.32, 17q22, 20p13) to leprosy (HLA-DQA, 3.23, P=5.8 x 10(-5); D17S1868, 2.38, P=0.0005; D20S889, 1.51, P=0.004). The peak at D20S889 for leprosy is 3.5 Mb distal to that reported at D20S115 for leprosy in India. (151 words).


Subject(s)
Chromosomes, Human, Pair 15/genetics , Genetic Predisposition to Disease , Leprosy/genetics , Tuberculosis/genetics , Brazil , Chromosome Mapping , Chromosomes, Human, Pair 4/genetics , Chromosomes, Human, Pair 6/genetics , Female , Genetic Linkage , Genetic Markers , Genetic Testing , Genome, Human , Humans , India , Male
20.
s.l; s.n; 2004. 12 p. tab, graf.
Non-conventional in English | Sec. Est. Saúde SP, HANSEN, Hanseníase Leprosy, SESSP-ILSLACERVO, Sec. Est. Saúde SP | ID: biblio-1242292

ABSTRACT

The region of conserved synteny on mouse chromosome 11/human 17q11-q21 is known to carry a susceptibility gene(s) for intramacrophage pathogens. The region is rich in candidates including NOS2A, CCL2/MCP-1, CCL3/MIP-1 alpha, CCL4/MIP-1 beta, CCL5/RANTES, CCR7, STAT5A/5B. To examine the region in man, we studied 92 multicase tuberculosis (627 individuals) and 72 multicase leprosy (372 indiciduals) families from Brazil. Multipoint nonparametric analysis (ALLEGRO) using 16 microsatellites shows two peaks of linkage for leprosy at D17S250 (Zir score 2.34; P=0.01) and D17S1795 (Zir 2.67; P=O.004) and a single peack for tuberculosis at D17S250 (Zir 2.04; P=0.02). Combined analysis shows significant linkage (peak Zir 3.38) at D17S250, equivalent to an allele sharing LOD score 2.48 (P=0.0004). To determine whether one or multiple genes contribute, 49 informative single nucleotide polymorphisms were typed in candidate genes. Family-based allelic association testing that was robust to family clustering demonstrated significant associations with tuberculosis susceptibility at four loci separated by intervals (NOS2A-8.4 Mb-CCL 18-32.3 kb-CCL4-6.04 Mb-STAT5B) up to several Mb. Stepwise conditional logistic regression analysis using a case/pseudo-control data set showed that the four genes contributed separate main effects, consistent with a cluster of susceptibilitty genes acros 17q11.2


Subject(s)
Humans , /immunology , /immunology , Leprosy/genetics , Leprosy/immunology , Tuberculosis/genetics , Tuberculosis/immunology , Genetics, Population
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