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1.
Exp Eye Res ; 240: 109771, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38163580

ABSTRACT

HSV1 presents as epithelial or stromal keratitis or keratouveitis and can lead to sight-threatening complications. KLF4, a critical transcription factor, and regulator of cell growth and differentiation, is essential in corneal epithelium stratification and homeostasis. Here, we want to understand the epigenetic modification specifically the methylation status of KLF4 in epithelium samples of HSV1 keratitis patients. After obtaining consent, epithelial scrapes were collected from 7 patients with clinically diagnosed HSV1 keratitis and 7 control samples (patients undergoing photorefractive keratectomy). Genomic DNA was isolated from the collected samples using the Qiagen DNeasy Kit. Subsequently, bisulfite modification was performed. The bisulphite-modified DNA was then subjected to PCR amplification using specific primers designed to target the KLF4, ACTB gene region, allowing for the amplification of methylated and unmethylated DNA sequences. The amplified DNA products were separated and visualized on a 3% agarose gel. KLF4 hypermethylation was found in 6 out of 7 (85.71%) eyes with viral keratitis, while 1 eye showed hypomethylation compared to PRK samples. Out of these 6, there were 2 each of epithelial dendritic keratitis, epithelial geographical keratitis, and neurotrophic keratitis. The patient with hypomethylated KLF4 had a recurrent case of HSV1 keratitis with multiple dendrites and associated vesicular lesions of the lip along with a history of fever. KLF4 hypermethylation in most viral keratitis cases indicated the under functioning of KLF4 and could indicate a potential association between KLF4 hypermethylation and the development or progression of HSV1 keratitis.


Subject(s)
Epithelium, Corneal , Eye Infections, Viral , Keratitis , Humans , DNA , DNA Methylation , Epithelium, Corneal/pathology , Eye Infections, Viral/genetics , Eye Infections, Viral/pathology , Keratitis/pathology
2.
Langmuir ; 40(6): 2849-2861, 2024 Feb 13.
Article in English | MEDLINE | ID: mdl-38295859

ABSTRACT

This paper evaluates the potential of diamond-like carbon (DLC) as a durable surface protection to replace the chromium (Cr) layer, which is traditionally applied to gravure print cylinders and other components through a galvanic electroplating process. The fabrication of DLC is more eco-friendly and could reduce the environmental hazard posed by hexavalent chromium in liquid form that is used in Cr application and better adhere to environmental regulations. This could encourage businesses to bring the DLC fabrication process in-house, sharing resources such as materials, labor, and equipment, to help reduce costs. Four DLC variants (standard DLC, A-DLC, S-DLC, and organic silica) and chrome were analyzed and tested for their surface properties and durability. Data suggest that both standard DLC and S-DLC had higher surface free energy, allowing for good ink wetting on the surface when compared to chrome. In addition, the standard DLC and S-DLC surfaces are generally smoother than the chrome, resulting in lower relative hydrophilicity and allowing for easier removal of ink in the nonimage regions with the doctor blade. The elcometer adhesion test demonstrated that the bond strength of the DLC variants to their base layer was comparable to the bond strength of chrome, indicating that the adhesion strength of the two materials was similar. Furthermore, in the abrasion test, the wear on the standard DLC surface and the corresponding wear on the lamella tip of the metal doctor blades were notably lower than that observed on chrome. This distinction is particularly evident in each of the test trials, specifically run 1, which involved 2,000,000 wiping actions of a metal doctor blade in the presence of abrasive TiO2 ink pigments. Statistical analysis on standard DLC versus chrome suggests that DLC fabrication is effective and durable on plain and patterned surfaces. Therefore, from a sustainable and eco-friendly perspective, standard DLC and S-DLC would be good alternative durable surfaces for print cylinders and other components used in various industries due to superior wear resistance properties.

3.
Indian J Dermatol Venereol Leprol ; 89(2): 247-253, 2023.
Article in English | MEDLINE | ID: mdl-34114423

ABSTRACT

BACKGROUND: Psoriasis is associated with significant morbidity and impaired quality of life. Identification of the host genes that influence disease susceptibility and can potentially guide future, targeted therapy is the need of the hour. AIMS: The aim of the study was to investigate the associations of macrophage migration inhibitory factor (MIF) gene polymorphisms, that is, a 5-8-CATT tetra nucleotide repeats at -794 (-794*CATT5-8) and a single-nucleotide polymorphism at -173 (-173*G/C) with the risk of chronic plaque psoriasis and to observe the correlation, if any, of disease determinants with genetic functional variants and circulating MIF levels. METHODS: Five hundred and seventeen individuals (265 psoriasis patients and 252 controls) were genotyped for MIF gene polymorphisms. Data were analyzed with respect to disease susceptibility, serum MIF levels, disease severity, age at onset, disease duration and presence of comorbidities. RESULTS: The presence of co-morbidities was more frequently noted in patients with late onset disease (P = 0.01). No statistically significant differences were observed either in genotype (P = 0.680) or allele frequency (P = 0.69) with respect to distribution of MIF-173*G/C polymorphism between patients and controls. The frequencies of genotypes -794*CATT 5/7 and 7/7 were significantly lower in patients (P = 0.027* and 0.038*, respectively). CATT*5/MIF-173*C haplotype occurred at a higher frequency in patients (odds ratio 3.03, 95% confidence intervals 1.09-8.47, P = 0.02). The mean serum MIF levels were significantly higher in patients as compared to controls (P < 0.001). The presence of either extended MIF -794*CATT repeats or C allele did not reveal any significant association with serum MIF levels or age at onset. Analysis of effect of various disease determinants revealed no significant association with genetic variants and serum MIF levels. LIMITATIONS: The lesional expression of MIF could not be studied. CONCLUSION: Our results showed that CATT*5/MIF-173*C haplotype is associated with increased susceptibility to psoriasis vulgaris.


Subject(s)
Macrophage Migration-Inhibitory Factors , Psoriasis , Humans , Polymorphism, Single Nucleotide/genetics , Haplotypes , Cross-Sectional Studies , Macrophage Migration-Inhibitory Factors/genetics , Quality of Life , Genetic Predisposition to Disease/genetics , Promoter Regions, Genetic , Case-Control Studies , Patient Acuity , Psoriasis/diagnosis , Psoriasis/epidemiology , Psoriasis/genetics
4.
Indian J Med Res ; 154(2): 367-374, 2021 Aug.
Article in English | MEDLINE | ID: mdl-35295009

ABSTRACT

Background & objectives: Chemoradiation is the standard therapy for locally advanced invasive cervical cancer and response to treatment determines the outcome. Cancer stem cells (CSCs) and epithelial-mesenchymal transition (EMT) play a role in response to treatment and hence the aim of this study was to evaluate if their levels in pre-treatment biopsies by immunohistochemistry (IHC) could predict response to treatment and outcome. Methods: The study comprised 60 patients with FIGO Stage IIB/III invasive cervical carcinoma treated by chemoradiation. They were divided into two groups based on their clinical outcome: group 1, 30 patients who had no evidence of disease at 48 month follow up and group 2, 30 patients who had disease relapse within 6-12 months of treatment completion. IHC was performed for CSC markers (ALDH1, CD133, Nanog and Oct-4), EMT markers (E-cadherin and vimentin) and squamocolumnar junction (KRT7) markers and H-scores determined. Intergroup comparison was performed. The expression of these markers was also evaluated in histological sections of cervical pre-cancer (CIN1 and CIN3) in comparison to normal cervix. Results: Cervical Intraepithelial Neoplasia grade 3 (CIN3) showed high expression of ALDH1 and KRT7 as compared to normal cervical epithelium. Aldehyde dehydrogenase 1 (ALDH1) and CD133 were overexpressed in 70 and 24 per cent cervical carcinoma cases whereas E-cadherin showed reduced expression in invasive carcinoma as compared to normal controls. ALDH1 overexpression was significantly associated with disease relapse in invasive cervical carcinoma treated by chemoradiation (P<0.01). Interpretation & Conclusions: Determination of ALDH1 levels in pre-treatment cervical biopsies of invasive cervical carcinoma may be useful for prediction of response to chemoradiation, with high levels predicting for a poor response.


Subject(s)
Chemoradiotherapy , Uterine Cervical Neoplasms , Aldehyde Dehydrogenase 1 Family , Biomarkers, Tumor/metabolism , Cadherins , Female , Humans , Isoenzymes/metabolism , Recurrence , Retinal Dehydrogenase/metabolism , Uterine Cervical Neoplasms/drug therapy , Uterine Cervical Neoplasms/radiotherapy
5.
Materials (Basel) ; 12(4)2019 Feb 14.
Article in English | MEDLINE | ID: mdl-30769797

ABSTRACT

This paper reports the rapid synthesis, characterization, and photovoltaic and sensing applications of TiO2 nanoflowers prepared by a facile low-temperature solution process. The morphological characterizations clearly reveal the high-density growth of a three-dimensional flower-shaped structure composed of small petal-like rods. The detailed properties confirmed that the synthesized nanoflowers exhibited high crystallinity with anatase phase and possessed an energy bandgap of 3.2 eV. The synthesized TiO2 nanoflowers were utilized as photo-anode and electron-mediating materials to fabricate dye-sensitized solar cell (DSSC) and liquid nitroaniline sensor applications. The fabricated DSSC demonstrated a moderate conversion efficiency of ~3.64% with a maximum incident photon to current efficiency (IPCE) of ~41% at 540 nm. The fabricated liquid nitroaniline sensor demonstrated a good sensitivity of ~268.9 µA mM-1 cm-2 with a low detection limit of 1.05 mM in a short response time of 10 s.

6.
Indian J Med Res ; 147(2): 151-157, 2018 Feb.
Article in English | MEDLINE | ID: mdl-29806603

ABSTRACT

BACKGROUND & OBJECTIVES: Invasive cervical cancer patients are primarily treated with chemoradiation therapy. The overall and disease-free survival in these patients is variable and depends on the tumoral response apart from the tumour stage. This study was undertaken to assess whether in vivo changes in gene promoter methylation and transcript expression in invasive cervical cancer were induced by chemoradiation. Hence, paired pre- and post-treatment biopsy samples were evaluated for in vivo changes in promoter methylation and transcript expression of 10 genes (ESR1, BRCA1, RASSF1A, MYOD1, MLH1, hTERT, MGMT, DAPK1, BAX and BCL2L1) in response to chemoradiation therapy. METHODS: In patients with locally advanced invasive cervical cancer, paired pre- and post-treatment biopsies after 10 Gy chemoradiation were obtained. DNA/RNA was extracted and gene promoter methylation status was evaluated by custom-synthesized methylation PCR arrays, and the corresponding gene transcript expression was determined by absolute quantification method using quantitative reverse transcription PCR. RESULTS: Changes in the gene promoter methylation as well as gene expression following chemoradiation therapy were observed. BAX promoter methylation showed a significant increase (P< 0.01) following treatment. There was a significant increase in the gene transcript expression of BRCA1 (P< 0.01), DAPK1 and ESR1 (P< 0.05), whereas MYOD1 and MLH1 gene transcript expression was significantly decreased (P< 0.05) following treatment. INTERPRETATION & CONCLUSIONS: The findings of our study show that chemoradiation therapy can induce epigenetic alterations as well as affect gene expression in tissues of invasive cervical cancer which may have implications in determining radiation response.


Subject(s)
DNA Methylation/genetics , Neoplasm Proteins/genetics , Uterine Cervical Neoplasms/drug therapy , Uterine Cervical Neoplasms/radiotherapy , Adult , Aged , DNA Methylation/drug effects , DNA Methylation/radiation effects , Female , Gene Expression Regulation, Neoplastic/drug effects , Gene Expression Regulation, Neoplastic/radiation effects , Humans , Middle Aged , Neoplasm Invasiveness/genetics , Neoplasm Invasiveness/pathology , Promoter Regions, Genetic/drug effects , Promoter Regions, Genetic/radiation effects , Tumor Suppressor Proteins/genetics , Uterine Cervical Neoplasms/genetics , Uterine Cervical Neoplasms/pathology
7.
BMC Cancer ; 18(1): 357, 2018 04 02.
Article in English | MEDLINE | ID: mdl-29609538

ABSTRACT

BACKGROUND: Cervical cancer is a major cause of cancer-related mortality in women in the developing world. Cancer Stem cells (CSC) have been implicated in treatment resistance and metastases development; hence understanding their significance is important. METHODS: Primary culture from tissue biopsies of invasive cervical cancer and serial passaging was performed for establishing cell lines. Variable Number Tandem Repeat (VNTR) assay was performed for comparison of cell lines with their parental tissue. Tumorsphere and Aldefluor assays enabled isolation of cancer stem cells (CSC); immunofluorescence and flow cytometry were performed for their surface phenotypic expression in cell lines and in 28 tissue samples. Quantitative real-time PCR for stemness and epithelial-mesenchymal transition (EMT) markers, MTT cytotoxicity assay, cell cycle analysis and cell kinetic studies were performed. RESULTS: Four low-passage novel cell lines designated RSBS-9, - 14 and - 23 from squamous cell carcinoma and RSBS-43 from adenocarcinoma of the uterine cervix were established. All were HPV16+. VNTR assay confirmed their uniqueness and derivation from respective parental tissue. CSC isolated from these cell lines showed CD133+ phenotype. In tissue samples of untreated invasive cervical cancer, CD133+ CSCs ranged from 1.3-23% of the total population which increased 2.8-fold in radiation-resistant cases. Comparison of CD133+ with CD133- bulk population cells revealed increased tumorsphere formation and upregulation of stemness and epithelial-mesenchymal transition (EMT) markers with no significant difference in cisplatin sensitivity. CONCLUSION: Low-passage cell lines developed would serve as models for studying tumor biology. Cancer Stem Cells in cervical cancer display CD133+ phenotype and are increased in relapsed cases and hence should be targeted for achieving remission.


Subject(s)
AC133 Antigen/metabolism , Human papillomavirus 16/genetics , Papillomavirus Infections/complications , Papillomavirus Infections/virology , Uterine Cervical Neoplasms/etiology , Uterine Cervical Neoplasms/metabolism , Antineoplastic Agents/pharmacology , Biopsy , Cell Cycle/drug effects , Cell Cycle/genetics , Cell Line, Tumor , Cell Self Renewal/genetics , Cisplatin/pharmacology , Epithelial-Mesenchymal Transition/genetics , Female , Flow Cytometry , Human papillomavirus 16/classification , Humans , Karyotype , Minisatellite Repeats , Neoplastic Stem Cells/metabolism , Neoplastic Stem Cells/pathology , Uterine Cervical Neoplasms/pathology , Uterine Cervical Neoplasms/ultrastructure
8.
Dalton Trans ; 46(45): 15727-15735, 2017 Nov 21.
Article in English | MEDLINE | ID: mdl-29095453

ABSTRACT

Mixed phased TiO2 catalysts codoped with N and Ti3+ have been successfully synthesized using a low-temperature, one step hydrothermal method using TiN as the precursor. The as prepared samples were studied for their crystalline structure, morphology, composition, and optical properties using various analytical techniques such as X-ray diffraction (XRD), field emission scanning electron microscopy (FESEM), transmission electron microscopy (TEM), ultraviolet-visible diffuse reflectance spectroscopy (UV-vis DRS), and X-ray photoelectron spectroscopy (XPS). It was observed that N and Ti3+ codoped TiO2 samples having mixed phases of brookite, anatase and rutile could be obtained at a wide range of hydrothermal time durations ranging from 24 h to 72 h. The as-prepared samples exhibit a distinct red shift, suggesting that N and Ti3+ codoping significantly enhances the optical absorption characteristics of TiO2. The photocatalytic activity of the prepared samples was studied using methylene blue and colorless resorcinol dyes. The prepared samples demonstrated good photocatalytic activity because of their excellent mixed phase crystalline structures and an increase in the threshold wavelength response. The mechanism of the photocatalytic degradation reaction was also studied. This work provides a novel strategy to fabricate and extend the visible light response of TiO2, which facilitates their application in the environment remediation and energy conversion.

9.
Indian J Pathol Microbiol ; 59(4): 481-488, 2016.
Article in English | MEDLINE | ID: mdl-27721278

ABSTRACT

CONTEXT: High-grade serous carcinomas of ovarian, tubal, and peritoneal origin are together referred as pelvic serous carcinoma. The fallopian tubes, ovarian surface epithelium, and the tuboperitoneal junctional epithelium are all implicated in pelvic serous carcinogenesis. AIMS: The aim of this study is to identify putative precursor lesions of serous carcinoma including secretory cell outgrowths (SCOUTs), serous tubal intraepithelial carcinoma (STIC), and p53 signatures and assign its probable site of origin. SETTINGS AND DESIGN: Prospective case-control study of consecutive specimen comprising 32 serous carcinomas and 31 controls (10 normal adnexa, 10 benign and 6 atypically proliferative surface epithelial tumors, and 5 other carcinomas). SUBJECTS AND METHODS: Sectioning and extensive examination of the fimbrial end (SEE-FIM) protocol along with immunohistochemistry for Bcl-2, p53, and Ki-67 was employed for evaluating invasive carcinoma and precursor lesions in cases versus controls. RESULTS: SCOUT, p53 signatures, and STIC were most frequent in the serous carcinomas. p53 signatures and STIC were always seen in the fimbrial end. STICs were exclusively present in serous carcinomas, more common in ipsilateral tubes of cases with dominant ovarian mass. Multifocal p53 signatures with STIC were seen in 7 (21.9%) cases. STIC was present with or without an invasive carcinoma in 25% and in 6.25% of cases of pelvic serous carcinomas, respectively. The junctional epithelia did not show any lesion in any group. CONCLUSIONS: SEE-FIM protocol is recommended for evaluation of sporadicpelvic (ovarian/tubal/peritoneal) serous carcinoma. Based on the presence of STIC or invasive carcinoma, nearly 60% of all pelvic serous carcinomas are of fallopian tubal origin.


Subject(s)
Carcinoma in Situ/diagnosis , Cystadenocarcinoma, Serous/diagnosis , Cystadenocarcinoma, Serous/pathology , Fallopian Tube Neoplasms/diagnosis , Tumor Suppressor Protein p53/analysis , Adult , Carcinoma in Situ/complications , Carcinoma in Situ/pathology , Case-Control Studies , Fallopian Tube Neoplasms/complications , Fallopian Tube Neoplasms/pathology , Fallopian Tubes/pathology , Female , Humans , Middle Aged , Prospective Studies , Young Adult
10.
J Colloid Interface Sci ; 450: 213-223, 2015 Jul 15.
Article in English | MEDLINE | ID: mdl-25823725

ABSTRACT

This paper reports the synthesis of various molar concentrations of iron (Fe)-doped TiO2 nanoparticles and their efficient use as potential photocatalysts for photocatalytic degradation of toxic and harmful chemical, paranitrophenol. The nanoparticles were synthesized by a novel and facile ultrasonic assisted hydrothermal method and characterized in detail by various analytical techniques in terms of their morphological, structural, compositional, thermal, optical, pore size distribution, etc properties. The photocatalytic activities of the as-prepared Fe-doped TiO2 nanoparticles were examined under visible light illumination using para-nitrophenol as target pollutant. By detailed experimental findings revealed that the Fe dopant content crucially determines the catalytic activity of TiO2 nanoparticles. The maximum degradation rate of para-nitrophenol observed was 92% in 5 h when the Fe(3+) molar concentration was 0.05 mol%, without addition of any oxidizing reagents. The prepared nanoparticles demonstrated excellent photocatalytic response because of their small size, excellent crystalline structure, increase in threshold wavelength response and maximum separation of photogenerated charge carriers. Further, the determination of reaction intermediates has also been carried out and plausible mechanism of photocatalytic degradation of para-nitrophenol has been proposed.

11.
Mol Cell Biochem ; 404(1-2): 181-91, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25772483

ABSTRACT

Despite recent advances in treatment, cervical cancer still remains one of the leading causes of cancer related mortality among women worldwide including India. Chemoradiation treatment is the standard-of-care which involves administration of cisplatin, a radiosensitizer along with radiation. The epigenetic changes induced by cisplatin are not known and so we designed this in vitro experimental study. We evaluated the changes induced by cisplatin administration in gene promoter methylation and the transcript levels of set of 7 genes and compared it to the changes induced by 5-Azacytidine, a known demethylating agent in two cervical cancer cell lines: HeLa (adenocarcinoma derived) and SiHa (squamous cell carcinoma derived) cell lines. Overall, there was a pronounced cytotoxic and growth inhibitory effect of both the drugs alone and in combination for both the cell lines which was dose and time dependent. Cisplatin as well as 5-Azacytidine treatment affected gene promoter methylation status resulting in demethylation and re-expression of the genes under investigation which was more pronounced in case of SiHa cells as compared to HeLa cells. Further, both the drugs acted in synergism as evident from their combination treatment. Therefore, at the cellular level, cisplatin and 5-Azacytidine can induce epigenetic changes in gene promoter methylation with altered expression which can have implications for treatment of cervical cancer.


Subject(s)
Azacitidine/administration & dosage , Cell Proliferation/drug effects , Cisplatin/administration & dosage , Uterine Cervical Neoplasms/genetics , Apoptosis/drug effects , CpG Islands/drug effects , DNA Methylation/drug effects , Female , Gene Expression Regulation, Neoplastic/drug effects , HeLa Cells , Humans , India , Neoplasm Proteins/biosynthesis , Neoplasm Proteins/genetics , Promoter Regions, Genetic/drug effects , Uterine Cervical Neoplasms/drug therapy , Uterine Cervical Neoplasms/pathology
12.
Virchows Arch ; 466(6): 711-5, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25758290

ABSTRACT

Human papillomavirus (HPV) DNA testing is replacing cervical cytology as a primary cervical cancer screening tool. The aim of this study was to determine the frequency of occurrence of HPV types 16 and 18 in liquid-based cytology (LBC) cervical samples in our set-up. This study comprised of 302 LBC cervical samples. HPV 16 and HPV 18 were detected by polymerase chain reaction (PCR), and the results were compared between normal (n = 155), inflammatory (n = 99), squamous (n = 37) and glandular abnormalities (n = 11). Of our patient cohort, 73.8 % was ≤40 years old. We found HPV 16 DNA in 91/302 (30.1 %) cases and HPV 18 DNA in 21/302 (6.95 %). HPV types 16 and 18 were detected in 25.8 and 4.5 % cytologically normal samples, respectively. HPV 16 was positive in 29.3 % of inflammatory samples. Squamous cervical abnormalities were more often HPV positive (HPV 16 in 48.6 %; HPV 18 in 29.7 %) than glandular abnormalities (36.4 and 18.2 %, respectively). We found high-risk HPV DNA in more than one third of the tested women. A good number of these HPV-positive cases were negative in cervical cytology.


Subject(s)
Human papillomavirus 16 , Human papillomavirus 18 , Papillomavirus Infections/epidemiology , Papillomavirus Infections/virology , Uterine Cervical Neoplasms/virology , Adult , Aged , Aged, 80 and over , DNA, Viral/analysis , Early Detection of Cancer , Female , Humans , Middle Aged , Prevalence , Prospective Studies , Reverse Transcriptase Polymerase Chain Reaction , Uterine Cervical Neoplasms/diagnosis , Vaginal Smears , Young Adult
13.
EXCLI J ; 13: 1216-25, 2014.
Article in English | MEDLINE | ID: mdl-26417335

ABSTRACT

Five new 2,9,9-trimethyl-6,7,8,9-tetrahydro-benzocyclohepten-5-ylidene-amine derivatives (16a-16e) were synthesized from α-dehydro-ar-himachalene (11) that was originally prepared from an isomeric mixture of α, ß and γ himachalenes (10), the abundant sesquiterpenes of Cedrus deodara essential oil. In addition, different aryl himachalenes derivatives (9, 12, 14 and 15) were also formed from 11. The structures of the synthesized compounds were confirmed on the basis of their NMR, IR and mass spectral data. The prepared compounds were tested against a group of sixteen organisms including gram positive and gram negative bacterial and fungal strains. The introduction of a series of substituted imine groups into aryl himachalenes at 5(th) position (16a-16e) enhanced antimicrobial activity as compared to the aromatized derivatives (9, 12, 14 and 15) against gram-positive bacteria Bacillus subtilis, Micrococcus luteus and Staphylococcus aureus, and mycotoxigenic fungi Aspergillus parasiticus, A. ochraceous and A. sydowii. graphical Abstract, Figure 1(Fig. 1).

14.
Planta Med ; 78(2): 186-8, 2012 Jan.
Article in English | MEDLINE | ID: mdl-21979930

ABSTRACT

Two new sesquiterpenes, (E)-(2S,3S,6R)-atlantone-2,3-diol (1) and (E)-(2S,3S,6S)-atlantone-2,3,6-triol (2), along with two known sesquiterpenes, atlantolone (3) and (E)-α-atlantone (4), were isolated from Cedrus deodara Loud. The structures of the new compounds were elucidated on the basis of UV, IR, NMR, HR­ESI-QTOF­MS, and EI mass spectral studies. The n-hexane and chloroformextracts of sawdust and compounds 3 and 4 from the plant exhibited antifungal activity against Aspergillus flavus, A. niger, A. ochracoeus, A. parasiticus, and A. sydowii. A weak activity was also recorded against A. parasiticus and A. sydowii for compound 1, while Trichophyton rubrum was inhibited by compound 2 and the extracts.


Subject(s)
Antifungal Agents/pharmacology , Aspergillus/drug effects , Cedrus/chemistry , Plant Extracts/pharmacology , Sesquiterpenes/pharmacology , Trichophyton/drug effects , Antifungal Agents/isolation & purification , Molecular Structure , Plant Extracts/chemistry , Sesquiterpenes/isolation & purification , Wood
15.
Diagn Cytopathol ; 40(10): 893-7, 2012 Oct.
Article in English | MEDLINE | ID: mdl-21472871

ABSTRACT

Head and neck cancers (HNC), 90% of which are squamous cell carcinomas (SCC), rank sixth among all malignancies worldwide and comprise 40-50% of the total number of malignancies in India. In addition to alcohol and tobacco usage, which is the major source of oral carcinogens, viruses such as human papilloma virus (HPV) may also contribute to development of the malignancy. The aim of this study was to identify the prevalence of HPV in head and neck cancers using material from metastatic site. A total of 111 cases of neck nodal metastases were included in this study. The primary was identified as oral cavity, oropharynx and nasopharynx. In a subset, the primary remained "unknown." Polymerase chain reaction was carried out to detect HPV DNA on the fine needle aspirates. HPV was detected in 32.4% cases. Maximum positivity was observed in metastases from primary in the oral cavity (47.1%) with tongue (55%), followed by oropharynx (25%) and nasopharynx (5%) cases. In the unknown primary group, HPV was detected in 52.9% cases. Study defines the association of HPV with HNC in population of northern India. There was varied association of HPV depending on site of primary tumor arising in mucosal surfaces of head and neck region.


Subject(s)
Carcinoma, Squamous Cell/virology , Head and Neck Neoplasms/virology , Papillomaviridae/isolation & purification , Adolescent , Adult , Aged , Aged, 80 and over , Biopsy, Fine-Needle , Carcinoma, Squamous Cell/epidemiology , Carcinoma, Squamous Cell/pathology , Child , DNA Probes, HPV , DNA, Viral/analysis , Female , Head and Neck Neoplasms/epidemiology , Head and Neck Neoplasms/pathology , Humans , India/epidemiology , Male , Middle Aged , Mouth/virology , Nasopharynx/virology , Oropharynx/virology , Papillomaviridae/genetics , Polymerase Chain Reaction , Squamous Cell Carcinoma of Head and Neck
16.
J Microbiol Biotechnol ; 21(6): 545-55, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21715960

ABSTRACT

The diversity elucidation by amplified ribosomal DNA restriction analysis and 16S rDNA sequencing of 96 associative diazotrophs, isolated from the feeder roots of tea on enriched nitrogen-free semisolid media, revealed the predominance of Gram-positive over Gram-negative bacteria within the Kangra valley in Himachal Pradesh, India. The Gram-positive bacteria observed belong to two taxonomic groupings; Firmicutes, including the genera Bacillus and Paenibacillus; and Actinobacteria, represented by the genus Microbacterium. The Gram-negative bacteria included alpha-Proteobacteria genera Brevundimonas, Rhizobium, and Mesorhizobium; gamma-Proteobacteria genera Pseudomonas and Stenotrophomonas; and beta-Proteobacteria genera Azospira, Burkholderia, Delftia, Herbaspirillum and Ralstonia. The low level of similarity of two isolates, with the type strains Paenibacillus xinjiangensis and Mesorhizobium albiziae, suggests the possibility of raising species novum. The bacterial strains of different phylogenetic groups exhibited distinct carbon-source utilization patterns and fatty acid methyl ester profiles. The strains differed in their nitrogenase activities with relatively high activity seen in the Gramnegative strains exhibiting the highest similarity to Azospira oryzae, Delftia lacustris and Herbaspirillum huttiense.


Subject(s)
Camellia sinensis/microbiology , Genetic Variation , Gram-Negative Bacteria/classification , Gram-Positive Bacteria/classification , Nitrogen Fixation , Plant Roots/microbiology , DNA, Bacterial/analysis , DNA, Bacterial/genetics , DNA, Ribosomal/genetics , Gram-Negative Bacteria/genetics , Gram-Negative Bacteria/isolation & purification , Gram-Positive Bacteria/genetics , Gram-Positive Bacteria/isolation & purification , Molecular Sequence Data , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
17.
Arch Microbiol ; 192(11): 975-83, 2010 Nov.
Article in English | MEDLINE | ID: mdl-20821196

ABSTRACT

An efficient phosphate-solubilizing plant growth-promoting Acinetobacter rhizosphaerae strain BIHB 723 exhibited significantly higher solubilization of tricalcium phosphate (TCP) than Udaipur rock phosphate (URP), Mussoorie rock phosphate (MRP) and North Carolina rock phosphate (NCRP). Qualitative and quantitative differences were discerned in the gluconic, oxalic, 2-keto gluconic, lactic, malic and formic acids during the solubilization of various inorganic phosphates by the strain. Gluconic acid was the main organic acid produced during phosphate solubilization. Formic acid production was restricted to TCP solubilization and oxalic acid production to the solubilization of MRP, URP and NCRP. A significant increase in plant height, shoot fresh weight, shoot dry weight, root length, root dry weight, and root, shoot and soil phosphorus (P) contents was recorded with the inoculated treatments over the uninoculated NP(0)K or NP(TCP)K treatments. Plant growth promotion as a function of phosphate solubilization suggested that the use of bacterial strain would be a beneficial addition to the agriculture practices in TCP-rich soils in reducing the application of phosphatic fertilizers.


Subject(s)
Acinetobacter/metabolism , Gluconates/metabolism , Phosphates/metabolism , Soil Microbiology , Zea mays/growth & development , Acinetobacter/growth & development , Formates/metabolism , Oxalic Acid/metabolism , Plant Roots/microbiology , Soil/analysis , Zea mays/microbiology
18.
Leuk Lymphoma ; 51(5): 928-32, 2010 May.
Article in English | MEDLINE | ID: mdl-20367562

ABSTRACT

Genetic polymorphisms in the methylenetetrahydrofolate reductase (MTHFR) gene have been associated with the development of acute leukemias and various malignancies. We conducted a case-control study in 95 north Indian children with acute lymphoblastic leukemia (ALL) and 255 controls, to investigate the role of MTHFR C677T and A1298C polymorphisms as risk factors in the development of ALL. PCR-RFLP on genomic DNA was carried out to determine C677T and A1298C genotypes. The frequency of MTHFR C677T for the T allele was found to be 23.2% among patients and 18.2% among controls. The frequency of the C allele in MTHFR A1298C was 44.2% among cases and 48.2% in controls. Patients showed a higher frequency of heterozygosity for the MTHFR C677T polymorphism as compared to controls (40% vs 27.8%; OR = 1.73, 95% CI 1.02-2.91, p = 0.02), and the A1298C polymorphism did not show any difference in genotype frequency between cases and controls. MTHFR 677CC/1298AC genotype frequencies showed a statistically significant difference between cases and controls (OR = 0.58, 95% CI 0.34-1.01, p = 0.04). In conclusion, our study in north Indian controls and patients with pediatric ALL showed increased frequency for MTHFR C677T in the heterozygous state and no significant difference in the frequency of A1298C genotype between the two groups.


Subject(s)
Methylenetetrahydrofolate Reductase (NADPH2)/genetics , Polymorphism, Single Nucleotide/genetics , Precursor Cell Lymphoblastic Leukemia-Lymphoma/genetics , Adolescent , Case-Control Studies , Child , Child, Preschool , Female , Genetic Predisposition to Disease , Genotype , Humans , India , Infant , Male , Polymerase Chain Reaction , Polymorphism, Restriction Fragment Length , Precursor Cell Lymphoblastic Leukemia-Lymphoma/pathology , Risk Factors
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