Development and validation of a two glycolysis-related LncRNAs prognostic signature for glioma and in vitro analyses.

BACKGROUND: Mounting evidence suggests that there is a complex regulatory relationship between long non-coding RNAs (lncRNAs) and the glycolytic process during glioma development. This study aimed to investigate the prognostic role of glycolysis-related lncRNAs in glioma and their impact on the tumor microenvironment. METHODS: This study utilized glioma transcriptome data from public databases to construct, evaluate, and validate a prognostic signature based on differentially expressed (DE)-glycolysis-associated lncRNAs through consensus clustering, DE-lncRNA analysis, Cox regression analysis, and receiver operating characteristic (ROC) curves. The clusterProfiler package was applied to reveal the potential functions of the risk score-related differentially expressed genes (DEGs). ESTIMATE and Gene Set Enrichment Analysis (GSEA) were utilized to evaluate the relationship between prognostic signature and the immune landscape of gliomas. Furthermore, the sensitivity of patients to immune checkpoint inhibitor (ICI) treatment based on the prognostic feature was predicted with the assistance of the Tumor Immune Dysfunction and Exclusion (TIDE) algorithm. Finally, qRT-PCR was used to verify the difference in the expression of the lncRNAs in glioma cells and normal cell. RESULTS: By consensus clustering based on glycolytic gene expression profiles, glioma patients were divided into two clusters with significantly different overall survival (OS), from which 2 DE-lncRNAs, AL390755.1 and FLJ16779, were obtained. Subsequently, Cox regression analysis demonstrated that all of these lncRNAs were associated with OS in glioma patients and constructed a prognostic signature with a robust prognostic predictive efficacy. Functional enrichment analysis revealed that DEGs associated with risk scores were involved in immune responses, neurons, neurotransmitters, synapses and other terms. Immune landscape analysis suggested an extreme enrichment of immune cells in the high-risk group. Moreover, patients in the low-risk group were likely to benefit more from ICI treatment. qRT-PCR results showed that the expression of AL390755.1 and FLJ16779 was significantly different in glioma and normal cells. CONCLUSION: We constructed a novel prognostic signature for glioma patients based on glycolysis-related lncRNAs. Besides, this project had provided a theoretical basis for the exploration of new ICI therapeutic targets for glioma patients.

Direct Measurement of the Selective Microwave-Induced Heating of Agglomerates of Dipolar Molecules: The Origin of and Parameters Controlling a Microwave Specific Superheating Effect.

Agglomerates of polar molecules in nonpolar solvents are selectively heated by microwave radiation. The magnitude of the selective heating was directly measured by using the temperature dependence of the intensities of the Stokes and anti-Stokes bands in the Raman spectra of p-nitroanisole (pNA) and mesitylene. Under dynamic heating conditions, a large apparent temperature difference (ΔT) of over 100 °C was observed between the polar pNA solute and the nonpolar mesitylene solvent. This represents the first direct measurement of the selective microwave heating process. The magnitude of the selective microwave heating was affected by the properties of the agglomerated pNA. As the concentration of the pNA increases, the magnitude of the selective heating of the pNA was observed to decrease. This is explained by the tendency of the pNA dipoles to orient in an antiparallel fashion in the aggregates as measured by the Kirkwood g value, which decreased with increasing concentration. This effect reduces the net dipole moment of the agglomerates, which decreases the microwave absorption. After the radiation was terminated, the effective temperature of the dipolar molecules returned slowly to that of the medium. The slow heat transfer was modeled successfully by treating the solutions as a biphasic solvent/solute system. Based on modeling and the fact that the agglomerate can be heated above the boiling temperature of the solvent, an insulating layer of solvent vapor is suggested to form around the heated agglomerate, slowing convective heat transfer out of the agglomerate. This is an effect unique to microwave heating.

High-Pressure Stability of Energetic Crystal of Dihydroxylammonium 5,5'-Bistetrazole-1,1'-diolate: Raman Spectroscopy and DFT Calculations.

The vibrational and structural behavior of a novel, energetic crystal, dihydroxylammonium 5,5'-bistetrazole-1,1'-diolate (TKX-50), was examined over a broad pressure range to elucidate its structural and chemical stability at high pressures. Raman measurements were performed on single crystals compressed to 50 GPa in a diamond anvil cell, and data were obtained over the entire frequency range of TKX-50 Raman activity. The Raman spectroscopy results were complemented by density functional theory (DFT) calculations to provide vibrational mode assignments and to gain insight into pressure effects on the vibrational and crystal response of TKX-50. Several features were observed in Raman spectra measured in the ranges 4-10, 10-13, and 32-36 GPa. We suggest that the changes between 32 and 36 GPa may be associated with a phase transformation. In addition, a number of vibrational modes showed intensity exchange and avoided crossing of vibrational frequency at various pressures, characteristic of the coupling of modes. Despite all these pressure effects, the compression of TKX-50 to 50 GPa and the subsequent release of pressure did not result in any irreversible spectral changes, demonstrating its remarkable chemical stability. DFT calculations, using the PBE functional with an empirical dispersion correction by the Grimme, PBE-D method, were used to calculate pressure effects on Raman frequencies and unit cell parameters. The calculated Raman shifts to 20 GPa are in good overall agreement with the measured shifts over a broad range of frequencies. The calculations also show that TKX-50 exhibits anisotropic compressibility, with a highly incompressible response along the a axis. The calculated bulk modulus, a measure of average stiffness, of TKX-50 is significantly higher than the calculated or measured bulk moduli of other energetic crystals. We suggest that the strong intermolecular interactions and the coupling of vibrational modes may potentially contribute to the shock insensitivity of TKX-50. This work demonstrates the robust high-pressure response of TKX-50, making this crystal attractive for practical applications.

Microwave-specific acceleration of a Friedel-Crafts reaction: evidence for selective heating in homogeneous solution.

Thermally promoted Friedel-Crafts benzylation of arene solvents has been examined under both conventional convective heating with an oil bath and heating using microwave (MW) energy. Bulk solution temperatures-as measured by internal and external temperature probes and as defined by solvent reflux-were comparable in both sets of experiments. MW-specific rate enhancements were documented under certain conditions and not others. The observed rate enhancements at a given temperature are proposed to arise from selective MW heating of polar solutes, perturbing thermal equilibrium between the solute and bulk solution. Central to MW-specific thermal phenomena is the difference between heat and temperature. Temperature is a measure of the ensemble average kinetic molecular energy of all solution components, but temperature does not provide information about solute-specific energy differences that may arise as a consequence of selective MW heating. Enhanced chemical reactivity of the MW-absorbing solute can be described as a MW-specific "extra-temperature thermal effect", because the measurable solution temperature only captures a portion of the solute kinetic molecular energy. Experimental factors that favor MW-specific rate enhancements are discussed with an eye toward future development of MW-actuated organic reactions, in which the observed thermal reactivity exceeds what is predicted from temperature-based Arrhenius calculations.

High-pressure vibrational and polymorphic response of 1,1-diamino-2,2-dinitroethene single crystals: Raman spectroscopy.

Raman spectroscopy was used to examine the vibrational and polymorphic behavior of 1,1-diamino-2,2-dinitroethene (FOX-7) to elucidate its structural and chemical stability under high pressure. Measurements were performed on single crystals compressed in a diamond anvil cell, and data were obtained over the entire frequency range of FOX-7 Raman activity. Several new features were observed with increase of pressure: (i) new vibrational peaks and discontinuity in the shifts of the peaks at 2 and 4.5 GPa, (ii) apparent coupling or mixing of several modes, and (iii) changes in the NH2 stretching spectral shape and modes shift. The spectral changes at 2 GPa, in contrast to previous reports, involved only a few peaks and likely resulted from a small molecular transformation. In contrast, changes at 4.5 GPa involved most of the modes, and the pressure for the onset and completion of the changes depended on the pressure medium. A large pressure hysteresis regarding the changes at 4.5 GPa implies a reconstructive transformation. We suggest that this transformation reflects a change in the balance between interlayer (van der Waals) and in-layer (H-bonding) interactions. Despite these transformations, further compression to 40 GPa and subsequent release of pressure did not cause any irreversible changes. This finding implies that FOX-7 has remarkable chemical stability under high pressures. The observed coupling between the various modes with increasing pressure was analyzed within the Fermi resonance model. The potential implication of the coupling of modes for shock insensitivity of FOX-7 is briefly discussed.

Metal site-mediated, thermally induced structural changes in Cr6+-silicalite-2 (MEL) molecular sieves.

Cr(6+) ions were incorporated into the lattice sites of phase-pure silicalite-2 made using 3,5-dimethylpiperidinium as a structure-directing agent. The materials exhibited a remarkably well-resolved vibronic emission consisting of a high frequency progression of 987 cm(-1), which was assigned to the fundamental symmetric stretching mode of the (Si-O-)(2)Cr(═O)(2) group dominated by the terminal Cr═O stretch. A low frequency progression at 214 cm(-1), which was assigned to a symmetric O-Cr-O bending mode, was built on each band of the 987 cm(-1) progression. Studies of the vibronic structure of the emission spectrum as a function of temperature and Cr ion concentration reveal an abrupt change in the Franck-Condon factor of the emission at 20 K for samples with very low Cr concentrations (0.03 mol %). The change in the Franck-Condon factor is attributed to a temperature-induced structural change in the coordination sphere of the metal ion. This structural change was found to be accompanied by a concomitant structural change in the lattice structure of the silicalite-2. This structural change, as studied by temperature-dependent X-ray diffraction, did not involve a crystallographic phase change but an abrupt decrease in the unit cell volume, caused specifically by a decrease in the c-axis. This structural change was not observed in pure silicalite-2, indicating that it is not intrinsic to the silicalite lattice. Moreover, no similar structural change was observed at higher Cr loading (1 mol %). This suggests that the presence of the Cr ions and the changes in the coordination geometry they undergo at low temperature induced the observed contraction in the silicalite-2 lattice, in effect acting as a thermal switch that decreases the unit cell volume.

Synthesis, characterization, and spectroscopic characteristics of chromium(6+) and -(4+) silicalite-2 (ZSM-11) materials.

The systematic incorporation of Cr ions into a phase-pure silicalite-2 lattice was accomplished through hydrothermal synthesis using 3,5-dimethylpiperidinium as a templating agent. The Cr ions, after calcination to remove the template, were in the 6+ oxidation state, with their incorporation into the lattice verified by the systematic expansion of the unit cell as a function of Cr loading. The structures of these materials as revealed by electronic spectroscopy and X-ray absorption near-edge spectroscopy (XANES) were consistent with the dioxo structure typically exhibited by Cr(6+) in an amorphous silica matrix. These materials were highly luminescent, with the emission spectra showing an unusually well-resolved vibronic structure characteristic of an emissive site with little inhomogeneous broadening. The site was reduced under flowing CO to Cr(4+), as characterized by XANES. The reduction of Cr from 6+ to 4+ resulted in unit-cell volumes that are systematically smaller than those observed with Cr(6+), even though the ionic radius of Cr(4+) is larger. This is attributed to the fact that the Cr(6+) site is not a simple metal ion but a significantly larger [CrO(2)](2+) unit, requiring a larger lattice expansion to accommodate it. Through analysis of the XANES preedge and assignment of the ligand-field spectrum of the Cr(4+) ions, it is possible to establish isomorphic substitution into the silicalite lattice.