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1.
Nucleic Acids Res ; 52(11): 6558-6570, 2024 Jun 24.
Article in English | MEDLINE | ID: mdl-38520410

ABSTRACT

N-terminal arginine (NTR) methylation is a conserved feature of PIWI proteins, which are central components of the PIWI-interacting RNA (piRNA) pathway. The significance and precise function of PIWI NTR methylation in mammals remains unknown. In mice, PIWI NTRs bind Tudor domain containing proteins (TDRDs) that have essential roles in piRNA biogenesis and the formation of the chromatoid body. Using mouse MIWI (PIWIL1) as paradigm, we demonstrate that the NTRs are essential for spermatogenesis through the regulation of transposons and gene expression. The loss of TDRD5 and TDRKH interaction with MIWI results in attenuation of piRNA amplification. We find that piRNA amplification is necessary for transposon control and for sustaining piRNA levels including select, nonconserved, pachytene piRNAs that target specific mRNAs required for spermatogenesis. Our findings support the notion that the vast majority of pachytene piRNAs are dispensable, acting as self-serving genetic elements that rely for propagation on MIWI piRNA amplification. MIWI-NTRs also mediate interactions with TDRD6 that are necessary for chromatoid body compaction. Furthermore, MIWI-NTRs promote stabilization of spermiogenic transcripts that drive nuclear compaction, which is essential for sperm formation. In summary, the NTRs underpin the diversification of MIWI protein function.


Subject(s)
Arginine , Argonaute Proteins , Pachytene Stage , RNA, Small Interfering , Spermatogenesis , Animals , Male , Mice , Arginine/metabolism , Arginine/genetics , Argonaute Proteins/metabolism , Argonaute Proteins/genetics , DNA Transposable Elements , Piwi-Interacting RNA , RNA, Small Interfering/genetics , RNA, Small Interfering/metabolism , RNA-Binding Proteins , Tudor Domain
2.
Mol Cell ; 84(6): 1021-1035.e11, 2024 Mar 21.
Article in English | MEDLINE | ID: mdl-38359823

ABSTRACT

In the male mouse germ line, PIWI-interacting RNAs (piRNAs), bound by the PIWI protein MIWI2 (PIWIL4), guide DNA methylation of young active transposons through SPOCD1. However, the underlying mechanisms of SPOCD1-mediated piRNA-directed transposon methylation and whether this pathway functions to protect the human germ line remain unknown. We identified loss-of-function variants in human SPOCD1 that cause defective transposon silencing and male infertility. Through the analysis of these pathogenic alleles, we discovered that the uncharacterized protein C19ORF84 interacts with SPOCD1. DNMT3C, the DNA methyltransferase responsible for transposon methylation, associates with SPOCD1 and C19ORF84 in fetal gonocytes. Furthermore, C19ORF84 is essential for piRNA-directed DNA methylation and male mouse fertility. Finally, C19ORF84 mediates the in vivo association of SPOCD1 with the de novo methylation machinery. In summary, we have discovered a conserved role for the human piRNA pathway in transposon silencing and C19ORF84, an uncharacterized protein essential for orchestrating piRNA-directed DNA methylation.


Subject(s)
DNA Methylation , Piwi-Interacting RNA , Male , Humans , Animals , Mice , RNA, Small Interfering/genetics , RNA, Small Interfering/metabolism , Proteins/metabolism , Germ Cells/metabolism , Argonaute Proteins/genetics , Argonaute Proteins/metabolism , DNA Transposable Elements/genetics , Mammals/metabolism
3.
bioRxiv ; 2024 Jan 01.
Article in English | MEDLINE | ID: mdl-38260298

ABSTRACT

N-terminal arginine (NTR) methylation is a conserved feature of PIWI proteins, which are central components of the PIWI-interacting RNA (piRNA) pathway. The significance and precise function of PIWI NTR methylation in mammals remains unknown. In mice, PIWI NTRs bind Tudor domain containing proteins (TDRDs) that have essential roles in piRNA biogenesis and the formation of the chromatoid body. Using mouse MIWI (PIWIL1) as paradigm, we demonstrate that the NTRs are essential for spermatogenesis through the regulation of transposons and gene expression. Surprisingly, the loss of TDRD5 and TDRKH interaction with MIWI results in defective piRNA amplification, rather than an expected failure of piRNA biogenesis. We find that piRNA amplification is necessary for both transposon control and for sustaining levels of select, nonconserved, pachytene piRNAs that target specific mRNAs required for spermatogenesis. Our findings support the notion that the vast majority of pachytene piRNAs are dispensable, acting as autonomous genetic elements that rely for propagation on MIWI piRNA amplification. MIWI-NTRs also mediate interactions with TDRD6 that are necessary for chromatoid body compaction. Furthermore, MIWI-NTRs promote stabilization of spermiogenic transcripts that drive nuclear compaction, which is essential for sperm formation. In summary, the NTRs underpin the diversification of MIWI protein function.

4.
Nat Commun ; 11(1): 3739, 2020 07 27.
Article in English | MEDLINE | ID: mdl-32719317

ABSTRACT

The PIWI protein MIWI2 and its associated PIWI-interacting RNAs (piRNAs) instruct DNA methylation of young active transposable elements (TEs) in the male germline. piRNAs are proposed to recruit MIWI2 to the transcriptionally active TE loci by base pairing to nascent transcripts, however the downstream mechanisms and effector proteins utilized by MIWI2 in directing de novo TE methylation remain incompletely understood. Here, we show that MIWI2 associates with TEX15 in foetal gonocytes. TEX15 is predominantly a nuclear protein that is not required for piRNA biogenesis but is essential for piRNA-directed TE de novo methylation and silencing. In summary, TEX15 is an essential executor of mammalian piRNA-directed DNA methylation.


Subject(s)
Argonaute Proteins/metabolism , Cell Cycle Proteins/metabolism , DNA Methylation/genetics , DNA Transposable Elements/genetics , Gene Silencing , Animals , Argonaute Proteins/genetics , Female , Fetus/cytology , Genome , Germ Cells/metabolism , Male , Mice , Mice, Inbred C57BL , Protein Binding , Testis/metabolism
5.
Nature ; 584(7822): 635-639, 2020 08.
Article in English | MEDLINE | ID: mdl-32674113

ABSTRACT

In mammals, the acquisition of the germline from the soma provides the germline with an essential challenge: the need to erase and reset genomic methylation1. In the male germline, RNA-directed DNA methylation silences young, active transposable elements2-4. The PIWI protein MIWI2 (PIWIL4) and its associated PIWI-interacting RNAs (piRNAs) instruct DNA methylation of transposable elements3,5. piRNAs are proposed to tether MIWI2 to nascent transposable element transcripts; however, the mechanism by which MIWI2 directs the de novo methylation of transposable elements is poorly understood, although central to the immortality of the germline. Here we define the interactome of MIWI2 in mouse fetal gonocytes undergoing de novo genome methylation and identify a previously unknown MIWI2-associated factor, SPOCD1, that is essential for the methylation and silencing of young transposable elements. The loss of Spocd1 in mice results in male-specific infertility but does not affect either piRNA biogenesis or the localization of MIWI2 to the nucleus. SPOCD1 is a nuclear protein whose expression is restricted to the period of de novo genome methylation. It co-purifies in vivo with DNMT3L and DNMT3A, components of the de novo methylation machinery, as well as with constituents of the NURD and BAF chromatin remodelling complexes. We propose a model whereby tethering of MIWI2 to a nascent transposable element transcript recruits repressive chromatin remodelling activities and the de novo methylation apparatus through SPOCD1. In summary, we have identified a previously unrecognized and essential executor of mammalian piRNA-directed DNA methylation.


Subject(s)
DNA Methylation/genetics , RNA, Small Interfering/genetics , RNA, Small Interfering/metabolism , Animals , Argonaute Proteins/metabolism , Chromatin Assembly and Disassembly , DNA (Cytosine-5-)-Methyltransferases/metabolism , DNA Methyltransferase 3A , DNA Transposable Elements/genetics , Female , Fertility/genetics , Gene Silencing , Genes, Intracisternal A-Particle/genetics , Long Interspersed Nucleotide Elements/genetics , Male , Mice , RNA, Small Interfering/biosynthesis , Spermatogenesis/genetics
6.
Int J Cancer ; 147(9): 2564-2577, 2020 11 01.
Article in English | MEDLINE | ID: mdl-32525563

ABSTRACT

Merlin is a versatile tumor suppressor protein encoded by the NF2 gene. Several lines of evidence suggest that Merlin exerts its tumor suppressor activity, at least in part, by forming an inhibitory complex with cluster of differentiation 44 (CD44). Consistently, numerous NF2 mutations in cancer patients are predicted to perturb the interaction of Merlin with CD44. We hypothesized that disruption of the Merlin-CD44 complex through loss of Merlin, unleashes putative tumor- or metastasis-promoting functions of CD44. To evaluate the relevance of the Merlin-CD44 interaction in vivo, we compared tumor growth and progression in Cd44-positive and Cd44-negative Nf2-mutant mice. Heterozygous Nf2-mutant mice were prone to developing highly metastatic osteosarcomas. Importantly, while the absence of the Cd44 gene had no effect on the frequency of primary osteosarcoma development, it strongly diminished osteosarcoma metastasis formation in the Nf2-mutant mice. In vitro assays identified transendothelial migration as the most prominent cellular phenotype dependent on CD44. Adhesion to endothelial cells was blocked by interfering with integrin α4ß1 (very late antigen-4, VLA-4) on osteosarcoma cells and CD44 upregulated levels of integrin VLA-4 ß1 subunit. Among other putative functions of CD44, which may contribute to the metastatic behavior, the passage through the endothelial cells also appears to be critical in vivo, as CD44 significantly promoted formation of lung metastasis upon intravenous injection of osteosarcoma cells into immunocompromised mice. Altogether, our results strongly suggest that CD44 plays a metastasis-promoting role in the absence of Merlin.


Subject(s)
Bone Neoplasms/genetics , Hyaluronan Receptors/metabolism , Lung Neoplasms/genetics , Neurofibromin 2/genetics , Osteosarcoma/genetics , Animals , Bone Neoplasms/pathology , Bone and Bones/pathology , Cell Adhesion/genetics , Cell Line, Tumor/transplantation , Cell Proliferation/genetics , Disease Models, Animal , Disease Progression , Humans , Hyaluronan Receptors/genetics , Lung/pathology , Lung Neoplasms/secondary , Male , Mice , Mice, Knockout , Osteosarcoma/secondary
7.
Nat Rev Genet ; 20(2): 89-108, 2019 02.
Article in English | MEDLINE | ID: mdl-30446728

ABSTRACT

In animals, PIWI-interacting RNAs (piRNAs) of 21-35 nucleotides in length silence transposable elements, regulate gene expression and fight viral infection. piRNAs guide PIWI proteins to cleave target RNA, promote heterochromatin assembly and methylate DNA. The architecture of the piRNA pathway allows it both to provide adaptive, sequence-based immunity to rapidly evolving viruses and transposons and to regulate conserved host genes. piRNAs silence transposons in the germ line of most animals, whereas somatic piRNA functions have been lost, gained and lost again across evolution. Moreover, most piRNA pathway proteins are deeply conserved, but different animals employ remarkably divergent strategies to produce piRNA precursor transcripts. Here, we discuss how a common piRNA pathway allows animals to recognize diverse targets, ranging from selfish genetic elements to genes essential for gametogenesis.


Subject(s)
DNA Transposable Elements , Evolution, Molecular , Gene Silencing , RNA, Small Interfering , Virus Diseases , Viruses , Animals , Argonaute Proteins/genetics , Argonaute Proteins/metabolism , Heterochromatin/genetics , Heterochromatin/metabolism , Humans , RNA, Small Interfering/genetics , RNA, Small Interfering/metabolism , Virus Diseases/genetics , Virus Diseases/metabolism , Viruses/genetics , Viruses/metabolism
8.
Oncotarget ; 7(48): 78242-78254, 2016 Nov 29.
Article in English | MEDLINE | ID: mdl-27793041

ABSTRACT

Hyperactive Ras signaling has strong oncogenic effects causing several different forms of cancer. Hyperactivity is frequently induced by mutations within Ras itself, which account for up to 30% of all human cancers. In addition, hyperactive Ras signaling can also be triggered independent of Ras by either mutation or by misexpression of various upstream regulators and immediate downstream effectors. We have previously reported that C-kinase potentiated protein phosphatase-1 inhibitor of 17 kDa (CPI-17) can drive Ras activity and promote tumorigenic transformation by inhibition of the tumor suppressor Merlin. We now describe an additional element of this oncogenic mechanism in the form of the ezrin-radixin-moesin (ERM) protein family, which exhibits opposing roles in Ras activity control. Thus, CPI-17 drives Ras activity and tumorigenesis in a two-fold way; inactivation of the tumor suppressor merlin and activation of the growth promoting ERM family. The in vivo significance of this oncogenic switch is highlighted by demonstrating CPI-17's involvement in human melanoma pathogenesis.


Subject(s)
Cytoskeletal Proteins/metabolism , Melanoma/enzymology , Membrane Proteins/metabolism , Microfilament Proteins/metabolism , Phosphoprotein Phosphatases/metabolism , Skin Neoplasms/enzymology , ras Proteins/metabolism , Animals , Cell Proliferation , Cell Transformation, Neoplastic/genetics , Cell Transformation, Neoplastic/metabolism , Cell Transformation, Neoplastic/pathology , Cytoskeletal Proteins/genetics , Gene Expression Regulation, Neoplastic , HeLa Cells , Humans , Intracellular Signaling Peptides and Proteins , Melanoma/genetics , Melanoma/pathology , Membrane Proteins/genetics , Mice , Microfilament Proteins/genetics , Muscle Proteins , Myosin-Light-Chain Phosphatase/genetics , Myosin-Light-Chain Phosphatase/metabolism , NIH 3T3 Cells , Neurofibromin 2/genetics , Neurofibromin 2/metabolism , Phosphoprotein Phosphatases/genetics , Phosphorylation , RNA Interference , Signal Transduction , Skin Neoplasms/genetics , Skin Neoplasms/pathology , Time Factors , Transfection , ras Proteins/genetics
9.
PLoS One ; 10(8): e0129151, 2015.
Article in English | MEDLINE | ID: mdl-26258444

ABSTRACT

The tumour suppressor Merlin, encoded by the gene NF2, is frequently mutated in the autosomal dominant disorder neurofibromatosis type II, characterised primarily by the development of schwannoma and other glial cell tumours. However, NF2 is expressed in virtually all analysed human and rodent organs, and its deletion in mice causes early embryonic lethality. Additionally, NF2 encodes for two major isoforms of Merlin of unknown functionality. Specifically, the tumour suppressor potential of isoform 2 remains controversial. In this study, we used Nf2 isoform-specific knockout mouse models to analyse the function of each isoform during development and organ homeostasis. We found that both isoforms carry full tumour suppressor functionality and can completely compensate the loss of the other isoform during development and in most adult organs. Surprisingly, we discovered that spermatogenesis is strictly dependent on the presence of both isoforms. While the testis primarily expresses isoform 1, we noticed an enrichment of isoform 2 in spermatogonial stem cells. Deletion of either isoform was found to cause decreased sperm quality as observed by maturation defects and head/midpiece abnormalities. These defects led to impaired sperm functionality as assessed by decreased sperm capacitation. Thus, we describe spermatogenesis as a new Nf2-dependent process. Additionally, we provide for the first time in vivo evidence for equal tumour suppressor potentials of Merlin isoform 1 and isoform 2.


Subject(s)
Neoplasms/metabolism , Neurofibromin 2/metabolism , Spermatogenesis/physiology , Spermatozoa/physiology , Animals , Brain Neoplasms/metabolism , Cell Separation , Female , Fertility , Flow Cytometry , Gene Deletion , Genotype , In Situ Hybridization , Liver/pathology , Male , Mice , Mice, Inbred C57BL , Mice, Knockout , Muscles/pathology , Neurilemmoma/metabolism , Neurofibromin 2/genetics , Neuroglia/metabolism , Phenotype , Protein Isoforms , Signal Transduction , Testis/metabolism
10.
Nat Cell Biol ; 17(3): 212-3, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25720961

ABSTRACT

Cells often migrate in tightly connected groups with coordinated movement and polarity. The collective migration of epithelial cell sheets is now shown to be mediated by a signalling axis that involves the merlin tumour-suppressor protein, the tight-junction-associated angiomotin-Rich1 complex and the Rac1 small GTPase.


Subject(s)
Keratinocytes/metabolism , Mechanotransduction, Cellular/genetics , Neurofibromin 2/metabolism , Pseudopodia/metabolism , rac1 GTP-Binding Protein/metabolism , Animals , Humans
11.
Acta Neuropathol Commun ; 2: 82, 2014 Jul 12.
Article in English | MEDLINE | ID: mdl-25012216

ABSTRACT

Mutagenic loss of the NF2 tumor suppressor gene encoded protein merlin is known to provoke the hereditary neoplasia syndrome, Neurofibromatosis type 2 (NF2). In addition to glial cell-derived tumors in the PNS and CNS, disease-related lesions also affect the skin and the eyes. Furthermore, 60% of NF2 patients suffer from peripheral nerve damage, clinically referred to as peripheral neuropathy. Strikingly, NF2-associated neuropathy often occurs in the absence of nerve damaging tumors, suggesting tumor-independent events. Recent findings indicate an important role of merlin in neuronal cell types concerning neuromorphogenesis, axon structure maintenance and communication between axons and Schwann cells. In this review, we compile clinical and experimental evidences for the underestimated role of the tumor suppressor merlin in the neuronal compartment.


Subject(s)
Neurofibromatosis 2/metabolism , Neurofibromin 2/metabolism , Neurons/metabolism , Axons/metabolism , Humans , Mutation , Neurofibromatosis 2/genetics , Neurofibromin 2/genetics , Polyneuropathies/genetics , Protein Isoforms , Schwann Cells/metabolism
12.
Brain ; 137(Pt 2): 420-32, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24309211

ABSTRACT

Axonal surface proteins encompass a group of heterogeneous molecules, which exert a variety of different functions in the highly interdependent relationship between axons and Schwann cells. We recently revealed that the tumour suppressor protein merlin, mutated in the hereditary tumour syndrome neurofibromatosis type 2, impacts significantly on axon structure maintenance in the peripheral nervous system. We now report on a role of neuronal merlin in the regulation of the axonal surface protein neuregulin 1 important for modulating Schwann cell differentiation and myelination. Specifically, neuregulin 1 type III expression is reduced in sciatic nerve tissue of neuron-specific knockout animals as well as in biopsies from seven patients with neurofibromatosis type 2. In vitro experiments performed on both the P19 neuronal cell line and primary dorsal root ganglion cells demonstrate the influence of merlin on neuregulin 1 type III expression. Moreover, expression of ERBB2, a Schwann cell receptor for neuregulin 1 ligands is increased in nerve tissue of both neuron-specific merlin knockout animals and patients with neurofibromatosis type 2, demonstrating for the first time that axonal merlin indirectly regulates Schwann cell behaviour. Collectively, we have identified that neuronally expressed merlin can influence Schwann cell activity in a cell-extrinsic manner.


Subject(s)
Neuregulin-1/physiology , Neurofibromin 2/physiology , Neurons/physiology , Receptor, ErbB-2/biosynthesis , Schwann Cells/metabolism , Signal Transduction/physiology , Adult , Aged , Animals , Cell Line , Cells, Cultured , Female , Humans , Male , Mice, Inbred C57BL , Mice, Knockout , Mice, Transgenic , Middle Aged , Neurofibromatosis 2/metabolism , Neurofibromatosis 2/pathology , Neurons/pathology , Schwann Cells/pathology
13.
Nat Neurosci ; 16(4): 426-33, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23455610

ABSTRACT

The autosomal dominant disorder neurofibromatosis type 2 (NF2) is a hereditary tumor syndrome caused by inactivation of the NF2 tumor suppressor gene, encoding merlin. Apart from tumors affecting the peripheral and central nervous systems, most NF2 patients develop peripheral neuropathies. This peripheral nerve disease can occur in the absence of nerve-damaging tumors, suggesting an etiology that is independent of gross tumor burden. We discovered that merlin isoform 2 (merlin-iso2) has a specific function in maintaining axonal integrity and propose that reduced axonal NF2 gene dosage leads to NF2-associated polyneuropathy. We identified a merlin-iso2-dependent complex that promotes activation of the GTPase RhoA, enabling downstream Rho-associated kinase to promote neurofilament heavy chain phosphorylation. Merlin-iso2-deficient mice exhibited impaired locomotor capacities, delayed sensory reactions and electrophysiological signs of axonal neuropathy. Sciatic nerves from these mice and sural nerve biopsies from NF2 patients revealed reduced phosphorylation of the neurofilament H subunit, decreased interfilament spacings and irregularly shaped axons.


Subject(s)
Neurofibromatosis 2/metabolism , Neurofibromin 2/physiology , Polyneuropathies/metabolism , Adult , Amino Acid Sequence , Animals , Animals, Newborn , Cell Line, Tumor , Cells, Cultured , Female , Ganglia, Spinal/metabolism , Ganglia, Spinal/pathology , HEK293 Cells , Humans , Male , Mice , Mice, Inbred C57BL , Mice, Knockout , Middle Aged , Molecular Sequence Data , Neurofibromatosis 2/genetics , Neurofibromatosis 2/pathology , Neurofibromin 2/genetics , Phosphorylation/physiology , Polyneuropathies/genetics , Polyneuropathies/pathology , Pregnancy , Protein Isoforms/genetics , Protein Isoforms/physiology
14.
J Cell Biochem ; 112(12): 3824-33, 2011 Dec.
Article in English | MEDLINE | ID: mdl-21826709

ABSTRACT

Internalization of peptides and proteins into live cells is an essential prerequisite for studies on intracellular signal pathways, for treatment of certain microbial diseases and for signal transduction therapy, especially for cancer treatment. Cell penetrating peptides (CPPs) facilitate the transport of cargo-proteins through the cell membrane into live cells. CPPs which allow formation of non-covalent complexes with the cargo are used primarily in this study due to the relatively easy handling procedure. Efficiency of the protein uptake is estimated qualitatively by fluorescence microscopy and quantitatively by SDS-PAGE. Using the CPP cocktail JBS-Proteoducin, the intracellular concentrations of a secondary antibody and bovine serum albumin can reach the micromolar range. Internalization of antibodies allows mediation of intracellular pathways including knock down of signal transduction. The high specificity and affinity of antibodies makes them potentially more powerful than siRNA. Thus, CPPs represent a significant new possibility to study signal transduction processes in competition or in comparison to the commonly used other techniques. To estimate the highest attainable intracellular concentrations of cargo proteins, the CPPs are tested for cytotoxicity. Cell viability and membrane integrity relative to concentration of CPPs are investigated. Viability as estimated by the reductive activity of mitochondria (MTT-test) is more sensitive to higher concentrations of CPPs versus membrane integrity, as measured by the release of dead cell protease. Distinct differences in uptake efficiency and cytotoxic effects are found using six different CPPs and six different adhesion and suspension cell lines.


Subject(s)
Cell-Penetrating Peptides/metabolism , Peptides/metabolism , Proteins/metabolism , Transduction, Genetic , 3T3 Cells , Amino Acid Sequence , Animals , COS Cells , Chlorocebus aethiops , Electrophoresis, Polyacrylamide Gel , HeLa Cells , Humans , Mice , Microscopy, Fluorescence , Molecular Sequence Data , Peptides/genetics , Proteins/genetics , RNA, Small Interfering
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