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1.
J Prev Alzheimers Dis ; 11(5): 1325-1338, 2024.
Article in English | MEDLINE | ID: mdl-39350378

ABSTRACT

BACKGROUND: Alzheimer's disease (AD) is a neurodegenerative disorder featured by progressive cognitive decline, which manifests in severe impairment of memory, attention, emotional processing and daily activities, leading to significant disability and social burden. Investigation on Mild Cognitive Impairment (MCI), the prodromal and transitional stage between normal aging and AD, serves as a key in diagnosing and slowing down the progression of AD. Numerous effects have been made up to date, however, the attentional mechanisms under different external emotion stimuli in MCI and AD are still unexplored in deep. OBJECTIVE: To further explore the attentional mechanisms under different external emotion stimuli in both MCI and AD patients. DESIGN/SETTING/PARTICIPANTS/MEASUREMENTS: In 51 healthy volunteers (Controls, 24 males and 27 females), 52 MCI (19 males and 33 females), and 47 AD (15 males and 32 females) patients, we administered the visual oddball event-related potentials (ERPs) under three types of external emotional stimuli: Neutral, Happiness and Sadness, in which the components N1, P2, N2 and P3 as well as the abnormal cortical activations corresponding to the significant ERP differences in the three groups were observed. RESULTS: Under all three external emotions, in AD patients, N2 and P3 latencies were significantly prolonged compared to both Controls and MCI. In addition, under Happiness, in MCI, P3 latencies were significantly delayed compared to Controls. Meanwhile, under both Happiness and Sadness, in AD patients, P3 amplitudes were significantly decreased compared to Controls and MCI, respectively. During N2 time window, under Neutral emotion, significant hypoactivation in the right superior temporal gyrus was found in AD patients compared to Controls, and under Happiness, the activation of the right inferior frontal gyrus was significantly attenuated in MCI compared to Controls. Under Sadness, in AD patients, the activation of the right superior frontal gyrus was significantly decreased compared to MCI. During P3 time window, under both Happiness and Sadness, when AD patients compared to MCI, the significantly attenuated activations were located in the right fusiform gyrus and the right middle occipital gyrus, respectively. CONCLUSION: Our results demonstrated visual attentional deficits under external emotional stimuli in both MCI and AD patients, highlighting the function of Happiness for early detecting MCI, in which the P3 latency and the hypoactivation of right inferior frontal gyrus during N2 time window can be early signs. The current study sheds further light of attentional mechanisms in MCI and AD patients, and indicates the value of emotional processing in the early detection of cognitive dysfunction.


Subject(s)
Alzheimer Disease , Cognitive Dysfunction , Emotions , Humans , Cognitive Dysfunction/physiopathology , Cognitive Dysfunction/psychology , Cognitive Dysfunction/diagnosis , Male , Female , Alzheimer Disease/physiopathology , Alzheimer Disease/psychology , Aged , Emotions/physiology , Evoked Potentials, Visual/physiology , Electroencephalography , Middle Aged , Attention/physiology
2.
Mol Ther Oncol ; 32(4): 200871, 2024 Dec 19.
Article in English | MEDLINE | ID: mdl-39351073

ABSTRACT

Some cancer types including bladder, cervical, and uterine cancers are characterized by frequent mutations in EP300 that encode histone acetyltransferase p300. This enzyme can act both as a tumor suppressor and oncogene. In this review, we describe the role of p300 in cancer initiation and progression regarding EP300 aberrations that have been identified in TGCA Pan-Cancer Atlas studies and we also discuss possible anticancer strategies that target EP300 mutated cancers. Copy number alterations, truncating mutations, and abnormal EP300 transcriptions that affect p300 abundance and activity are associated with several pathological features such as tumor grading, metastases, and patient survival. Elevated EP300 correlates with a higher mRNA level of other epigenetic factors and chromatin remodeling enzymes that co-operate with p300 in creating permissive conditions for malignant transformation, tumor growth and metastases. The status of EP300 expression can be considered as a prognostic marker for anticancer immunotherapy efficacy, as EP300 mutations are followed by an increased expression of PDL-1.HAT activators such as CTB or YF2 can be applied for p300-deficient patients, whereas the natural and synthetic inhibitors of p300 activity, as well as dual HAT/bromodomain inhibitors and the PROTAC degradation of p300, may serve as strategies in the fight against p300-fueled cancers.

3.
J Undergrad Neurosci Educ ; 22(3): A197-A206, 2024.
Article in English | MEDLINE | ID: mdl-39355672

ABSTRACT

Electroencephalography (EEG) has given rise to a myriad of new discoveries over the last 90 years. EEG is a noninvasive technique that has revealed insights into the spatial and temporal processing of brain activity over many neuroscience disciplines, including sensory, motor, sleep, and memory formation. Most undergraduate students, however, lack laboratory access to EEG recording equipment or the skills to perform an experiment independently. Here, we provide easy-to-follow instructions to measure both wave and event-related EEG potentials using a portable, low-cost amplifier (Backyard Brains, Ann Arbor, MI) that connects to smartphones and PCs, independent of their operating system. Using open-source software (SpikeRecorder) and analysis tools (Python, Google Colaboratory), we demonstrate tractable and robust laboratory exercises for students to gain insights into the scientific method and discover multidisciplinary neuroscience research. We developed 2 laboratory exercises and ran them on participants within our research lab (N = 17, development group). In our first protocol, we analyzed power differences in the alpha band (8-13 Hz) when participants alternated between eyes open and eyes closed states (n = 137 transitions). We could robustly see an increase of over 50% in 59 (43%) of our sessions, suggesting this would make a reliable introductory experiment. Next, we describe an exercise that uses a SpikerBox to evoke an event-related potential (ERP) during an auditory oddball task. This experiment measures the average EEG potential elicited during an auditory presentation of either a highly predictable ("standard") or low-probability ("oddball") tone. Across all sessions in the development group (n=81), we found that 64% (n=52) showed a significant peak in the standard response window for P300 with an average peak latency of 442ms. Finally, we tested the auditory oddball task in a university classroom setting. In 66% of the sessions (n=30), a clear P300 was shown, and these signals were significantly above chance when compared to a Monte Carlo simulation. These laboratory exercises cover the two methods of analysis (frequency power and ERP), which are routinely used in neurology diagnostics, brain-machine interfaces, and neurofeedback therapy. Arming students with these methods and analysis techniques will enable them to investigate this laboratory exercise's variants or test their own hypotheses.

4.
Mol Cancer ; 23(1): 222, 2024 Oct 05.
Article in English | MEDLINE | ID: mdl-39367409

ABSTRACT

Ewing sarcoma (ES) poses a significant therapeutic challenge due to the difficulty in targeting its main oncodriver, EWS::FLI1. We show that pharmacological targeting of the EWS::FLI1 transcriptional complex via inhibition of P300/CBP drives a global transcriptional outcome similar to direct knockdown of EWS::FLI1, and furthermore yields prognostic risk factors for ES patient outcome. We find that EWS::FLI1 upregulates LMNB1 via repetitive GGAA motif recognition and acetylation codes in ES cells and EWS::FLI1-permissive mesenchymal stem cells, which when reversed by P300 inhibition leads to senescence of ES cells. P300-inhibited senescent ES cells can then be eliminated by senolytics targeting the PI3K signaling pathway. The vulnerability of ES cells to this combination therapy suggests an appealing synergistic strategy for future therapeutic exploration.


Subject(s)
Cellular Senescence , Oncogene Proteins, Fusion , Proto-Oncogene Protein c-fli-1 , RNA-Binding Protein EWS , Sarcoma, Ewing , p300-CBP Transcription Factors , Sarcoma, Ewing/metabolism , Sarcoma, Ewing/pathology , Sarcoma, Ewing/drug therapy , Sarcoma, Ewing/genetics , Humans , Proto-Oncogene Protein c-fli-1/metabolism , Proto-Oncogene Protein c-fli-1/genetics , RNA-Binding Protein EWS/genetics , RNA-Binding Protein EWS/metabolism , Cellular Senescence/drug effects , p300-CBP Transcription Factors/metabolism , p300-CBP Transcription Factors/antagonists & inhibitors , Oncogene Proteins, Fusion/genetics , Oncogene Proteins, Fusion/metabolism , Cell Line, Tumor , Gene Expression Regulation, Neoplastic/drug effects , Signal Transduction/drug effects , Mesenchymal Stem Cells/metabolism , Mesenchymal Stem Cells/drug effects , E1A-Associated p300 Protein
5.
Psychophysiology ; : e14693, 2024 Sep 30.
Article in English | MEDLINE | ID: mdl-39344966

ABSTRACT

The P300 event-related potential (ERP) is widely investigated in cognitive neuroscience, including related to aging, with smaller amplitudes and delayed latency consistently reported in Alzheimer's disease (AD). Given that AD-related neurological changes begin years before symptom onset, ERPs in asymptomatic elders with AD risk may characterize early changes. ERPs are seldom studied in this population. Yet, healthy carriers of apolipoprotein-E (APOE) ε4 have evidenced delayed P300 latencies, while P300 amplitude differences are seldom found. However, despite its frequent study, the specific cognitive processes reflected by P300 remain unclear. We propose that these challenges are due to the relatively long P300 window, which likely encompasses multiple underlying subprocesses that overlap in time. Temporal-spatial principal component analysis (tsPCA) maintains the high temporal resolution of EEG and is better suited to isolate processes that overlap in time. Thus, we interrogated APOE ε4 differences in P300 activity during successful stop-signal inhibitory control in healthy, cognitively intact older adults (25 ε4-, 20 ε4+), using both conventional ERP metrics (i.e., mean and peak amplitude) and P300 tsPCA factors. P300 amplitudes did not differ by ε4 using conventional metrics. tsPCA revealed two P300 factors in each ε4 group: first, a Posterior P300 (attention allocation) factor, and second, a relatively Anterior P300 (performance monitoring, evaluating, and updating) factor. tsPCA uniquely revealed greater activity in ε4+ vs. ε4- in Anterior P300. ε4 groups had comparable task performance, suggesting that greater P300 activity in ε4+ likely reflects neural compensation for ε4-related deficits, thereby enabling the maintenance of good task performance.

6.
Front Oncol ; 14: 1442965, 2024.
Article in English | MEDLINE | ID: mdl-39301551

ABSTRACT

Introduction: Despite rapid advances in molecular biology, personalized molecular therapy remains a clinical challenge for endometrial cancer due to its complex and heterogeneous tumor microenvironment.Based on clinical findings, AIB1 is a marker molecule for poor prognosis in endometrial cancer and may serve as a potential therapeutic target. Moreover, it is well known that aerobic glycolysis plays an important role in tumour energy metabolism. It has been previously reported in various hormone-related tumour studies that AIB1 affects glycolysis and promotes tumour development. However, the link between AIB1 and aerobic glycolysis in estrogen-dependent endometrial cancer remains unclear. Methods: We used two endometrial cancer cell lines to validate the high expression of target genes and the effect on the proliferative and invasive capacity of the tumours and verified the pattern of interactions and epigenetic modifications by CHIP and CO-IP techniques. Finally, the conclusions were validated on homozygous mice. Results: In this study, we investigated the transcriptional co-activation functions of AIB1, including its acetylation by PCAF, binding to the c-myc transcription factor, and recruitment of glycolysis-related gene promoters. Discussion: Our findings provide new clues that perturbation of normal homeostatic levels of AIB1 is linked with endometrial cancer. These findings suggest that targeting AIB1-mediated regulation of aerobic glycolysis may offer a novel therapeutic approach for endometrial cancer with high AIB1 expression, opening new avenues for personalized diagnostics and treatment strategies in this disease.

7.
Neuropsychologia ; 204: 109002, 2024 Sep 16.
Article in English | MEDLINE | ID: mdl-39293638

ABSTRACT

This study investigates the relationship between various target exposure signs and brain activation patterns by analyzing the EEG signals of 35 subjects observing four types of targets: well-camouflaged, with large color differences, with shadows, and of large size. Through ERP analysis and source localization, we have established that different exposure signs elicit distinct brain activation patterns. The ERP analysis revealed a strong correlation between the latency of the P300 component and the visibility of the exposure signs. Furthermore, our source localization findings indicate that exposure signs alter the current density distribution within the cortex, with shadows causing significantly higher activation in the frontal lobe compared to other conditions. The study also uncovered a pronounced right-brain laterality in subjects during target identification. By employing an LSTM neural network, we successfully differentiated EEG signals triggered by various exposure signs, achieving a classification accuracy of up to 96.4%. These results not only suggest that analyzing the P300 latency and cortical current distribution can differentiate the degree of visibility of target exposure signs, but also demonstrate the potential of using EEG characteristics to identify key exposure signs in camouflaged targets. This provides crucial insights for developing auxiliary camouflage strategies.

8.
Heliyon ; 10(17): e37389, 2024 Sep 15.
Article in English | MEDLINE | ID: mdl-39296172

ABSTRACT

Social hierarchies exist in all societies and impact cognitive functions, brain mechanisms, social interactions, and behaviors. High status individuals often exhibit enhanced working memory (WM) performance compared to lower status individuals. This study examined whether individual differences in social dominance, as a predictor of future status, relate to WM abilities. Five hundred and twenty-five students completed the Personality Research Form dominance subscale questionnaire. From this sample, students with the highest and lowest scores were invited to participate in the study. Sixty-four participants volunteered to take part and were subsequently categorized into high- and low-dominance groups based on their dominance subscale questionnaire (PRF_d) scores. They performed a Sternberg WM task with set sizes of 1, 4, or 7 letters while their EEG was recorded. Event-related potential (ERP) and power spectral analysis revealed significantly reduced P3b amplitude and higher event-related synchronization (ERS) of theta and beta during encoding and retrieval phases in the high-than low-dominance group. Despite these neural processing differences, behavioral performance was equivalent between groups, potentially reflecting comparable cognitive load demands of the task across dominance levels. Further, there were similar P3b patterns for each set-size within groups. These findings provide initial evidence that individual differences in social dominance trait correlate with WM functioning, as indexed by neural processing efficiency during WM performance.

9.
Neural Netw ; 180: 106655, 2024 Aug 22.
Article in English | MEDLINE | ID: mdl-39226850

ABSTRACT

A Brain-computer interface (BCI) system establishes a novel communication channel between the human brain and a computer. Most event related potential-based BCI applications make use of decoding models, which requires training. This training process is often time-consuming and inconvenient for new users. In recent years, deep learning models, especially participant-independent models, have garnered significant attention in the domain of ERP classification. However, individual differences in EEG signals hamper model generalization, as the ERP component and other aspects of the EEG signal vary across participants, even when they are exposed to the same stimuli. This paper proposes a novel One-source domain transfer learning method based Attention Domain Adversarial Neural Network (OADANN) to mitigate data distribution discrepancies for cross-participant classification tasks. We train and validate our proposed model on both a publicly available OpenBMI dataset and a Self-collected dataset, employing a leave one participant out cross validation scheme. Experimental results demonstrate that the proposed OADANN method achieves the highest and most robust classification performance and exhibits significant improvements when compared to baseline methods (CNN, EEGNet, ShallowNet, DeepCovNet) and domain generalization methods (ERM, Mixup, and Groupdro). These findings underscore the efficacy of our proposed method.

10.
Ren Fail ; 46(2): 2369342, 2024 Dec.
Article in English | MEDLINE | ID: mdl-39230047

ABSTRACT

Sepsis represents an organ dysfunction resulting from the host's maladjusted response to infection, and can give rise to acute kidney injury (AKI), which significantly increase the morbidity and mortality of septic patients. This study strived for identifying a novel therapeutic strategy for patients with sepsis-induced AKI (SI-AKI). Rat tubular epithelial NRK-52E cells were subjected to lipopolysaccharide (LPS) exposure for induction of in-vitro SI-AKI. The expressions of E1A binding protein p300 (EP300) and methylenetetrahydrofolate dehydrogenase 2 (MTHFD2) in NRK-52E cells were assessed by western blot and qRT-PCR, and their interaction was explored by chromatin immunoprecipitation performed with antibody for H3K27 acetylation (H3K27ac). The effect of them on SI-AKI-associated mitochondrial dysfunction of tubular epithelial cells was investigated using transfection, MTT assay, TUNEL staining, 2',7'-Dichlorodihydrofluorescein diacetate probe assay, Mitosox assay, and JC-1 staining. MTHFD2 and EP300 were upregulated by LPS exposure in NRK-52E cells. LPS increased the acetylation of H3 histone in the MTHFD2 promoter region, and EP300 suppressed the effect of LPS. EP300 ablation inhibited the expression of MTHFD2. MTHFD2 overexpression antagonized LPS-induced viability reduction, apoptosis promotion, reactive oxygen species overproduction, and mitochondrial membrane potential collapse of NRK-52E cells. By contrast, MTHFD2 knockdown and EP300 ablation brought about opposite consequences. Furthermore, MTHFD2 overexpress and EP300 ablation counteracted each other's effect in LPS-exposed NRK-52E cells. EP300-mediated H3 acetylation elevates MTHFD2 expression to reduce mitochondrial dysfunction of tubular epithelial cells in SI-AKI.


Subject(s)
Acute Kidney Injury , E1A-Associated p300 Protein , Epithelial Cells , Lipopolysaccharides , Methylenetetrahydrofolate Dehydrogenase (NADP) , Mitochondria , Animals , Rats , Acetylation , Methylenetetrahydrofolate Dehydrogenase (NADP)/metabolism , Methylenetetrahydrofolate Dehydrogenase (NADP)/genetics , E1A-Associated p300 Protein/metabolism , Acute Kidney Injury/metabolism , Acute Kidney Injury/pathology , Epithelial Cells/metabolism , Mitochondria/metabolism , Cell Line , Histones/metabolism , Apoptosis , Sepsis/metabolism , Kidney Tubules/pathology , Kidney Tubules/metabolism , Up-Regulation
11.
Mol Cancer ; 23(1): 209, 2024 Sep 28.
Article in English | MEDLINE | ID: mdl-39342174

ABSTRACT

BACKGROUND: BCR-ABL is a constitutively active tyrosine kinase that stimulates multiple downstream signaling pathways to promote the survival and proliferation of chronic myeloid leukemia (CML) cells. The clinical application of specific BCR-ABL tyrosine kinase inhibitors (TKIs) has led to significantly improved prognosis and overall survival in CML patients compared to previous treatment regimens. However, direct targeting of BCR-ABL does not eradicate CML cells expressing T315I-mutated BCR-ABL. Our previous study revealed that inhibiting CREB binding protein (CBP) is efficacious in activating ß-catenin/p300 signaling, promoting cell differentiation and inducing p53/p21-dependent senescence regardless of BCR-ABL mutation status. We hypothesize that the specific inhibition of CBP may represent a novel strategy to promote ß-catenin/p300-mediated differentiation and suppress cancer cell proliferation for treating CML patients. METHODS: The anticancer efficacy of PBA2, a novel CBP inhibitor, in CML cells expressing wild-type or T315I-mutated BCR-ABL was investigated in vitro and in vivo. Cell differentiation was determined by the nitroblue tetrazolium (NBT) reduction assay. The extent of cellular senescence was assessed by senescence-associated ß-galactosidase (SA-ß-Gal) activity. Cytotoxicity was measured by MTS assay. RNA interference was performed to evaluate the cell proliferation effects of CBP knockdown. The interaction of ß-catenin and CBP/p300 was examined by co-immunoprecipitation assay. RESULTS: PBA2 exhibited significantly higher anticancer effects than imatinib in CML cells harboring either wild-type or T315I-mutated BCR-ABL both in vitro and in vivo. Mechanistically, PBA2 reduced CBP expression and promoted ß-catenin-p300 interaction to induce cell differentiation and senescence. CONCLUSION: Our data supported the rational treatment of CML by inhibiting the ß-catenin/CBP pathway regardless of BCR-ABL mutation status.


Subject(s)
CREB-Binding Protein , Cell Proliferation , Fusion Proteins, bcr-abl , Leukemia, Myelogenous, Chronic, BCR-ABL Positive , Mutation , Signal Transduction , beta Catenin , Humans , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/genetics , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/drug therapy , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/pathology , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/metabolism , beta Catenin/metabolism , beta Catenin/genetics , Fusion Proteins, bcr-abl/genetics , Fusion Proteins, bcr-abl/antagonists & inhibitors , Fusion Proteins, bcr-abl/metabolism , Animals , CREB-Binding Protein/metabolism , CREB-Binding Protein/genetics , CREB-Binding Protein/antagonists & inhibitors , Mice , Cell Proliferation/drug effects , Cell Line, Tumor , Signal Transduction/drug effects , Xenograft Model Antitumor Assays , Cell Differentiation/drug effects , Antineoplastic Agents/pharmacology , Antineoplastic Agents/therapeutic use , Protein Kinase Inhibitors/pharmacology
12.
Biol Psychol ; 193: 108876, 2024 Sep 21.
Article in English | MEDLINE | ID: mdl-39313179

ABSTRACT

A near-miss is a situation in which a gambler almost wins but falls short by a small margin, which motivates gambling by making it feel like success is within reach. Existing research has extensively investigated the influence of contextual information on near-miss outcome processing; however, the impact of reward expectancy has received limited attention thus far. To address this gap, we utilized the wheel of fortune task and event-related potential technique (ERP) to quantify the electrophysiological responses associated with gambling outcomes at different levels of reward expectancy. Behaviorally, near-miss outcomes elicited a greater occurrence of counterfactual thoughts, feelings of regret, and heightened anticipation of rewards for subsequent trials compared to full-miss outcomes. ERP findings indicated that in contrast to full-miss outcomes, near-miss outcomes diminished feedback-related negativities (FRNs) and amplified P300s when reward expectancy was low, but amplified FRNs and diminished P300s when reward expectancy was high. These findings provide valuable insights into the neural mechanisms underlying the processing of outcome proximity and reward expectancy.

13.
Brain Res Bull ; 217: 111082, 2024 Oct 15.
Article in English | MEDLINE | ID: mdl-39307435

ABSTRACT

Costly third-party punishment (TPP) is an effective way to enforce fairness norms and promote cooperation. Recent studies have shown that the third party considers not only the proposer's suggested allocation but also the receiver's response to the allocation, which was typically ignored in traditional TPP studies when making punishment decisions. However, it remains unclear whether and how the varying unfair allocations and receivers' responses are integrated into third-party punishment. The current study addressed these issues at behavioral and electrophysiological levels by employing a modified third-party punishment task involving proposers' highly or moderately unfair allocations and the receivers' acceptance or rejection responses. At the behavioral level, participants punished proposers more often when receivers rejected relative to accepted unfair allocations. This effect was further modulated by the unfairness degree of allocations, indicated by a more pronounced rejection-sensitive effect when participants observed the moderately unfair offers. Electrophysiologically, when the receiver rejected the moderately unfair allocations, a stronger late-stage component P300/LPP, which was considered to be involved in allocations of attention resources, was found. Meanwhile, separated from the P300/LPP, the P200 associated with early attention capture demonstrated a rejection-sensitive effect. Together, in the costly TPP studies, the receiver is typically designated as passive and silent, and her/his responses to unfairness are conventionally ignored. However, our results indicate that except for the proposer's distribution behavior, the receiver's response does have an impact on third-party punishment in a way that interacts with the unfairness of allocations.


Subject(s)
Punishment , Humans , Male , Female , Young Adult , Adult , Electroencephalography/methods , Decision Making/physiology , Evoked Potentials/physiology , Cooperative Behavior , Brain/physiology , Attention/physiology
14.
Article in English | MEDLINE | ID: mdl-39196370

ABSTRACT

Fatigue is an extremely common symptom in in people with multiple sclerosis (PwMS) and has a severe impact on quality of life. The purpose of the present study was to verify whether fatigue in PwMS is associated with a selective covert attention impairment, as measured by event-related potentials and to assess whether it is more associated with an impairment of top-down or bottom-up attentional control. Twenty-two PwMS and fatigue-MSF, 17 without fatigue-MSnF and 35 healthy volunteers underwent a three-stimulus P300 novelty task that elicits both the P3a and the P3b components. P3b latency was comparable between groups, but PwMS, independently from the presence of fatigue displayed significantly greater P3b amplitudes. P3a latency was significantly prolonged in MSF alone, while P3a amplitude in MSnF group was greater than controls. MSF were able to categorize the task-relevant target stimulus but the orienting response to a novel salient stimulus was delayed, indicating an impairment in bottom-up attentional control mechanism related to ventral attention network. Fatigue is selectively associated with a covert attentional deficit related to the ability to reallocate attentional resources to salient stimuli, a crucial function of adaptive decision-making behaviour.

15.
Brain Sci ; 14(8)2024 Aug 20.
Article in English | MEDLINE | ID: mdl-39199527

ABSTRACT

This work proposes an intrinsically explainable, straightforward method to decode P300 waveforms from electroencephalography (EEG) signals, overcoming the black box nature of deep learning techniques. The proposed method allows convolutional neural networks to decode information from images, an area where they have achieved astonishing performance. By plotting the EEG signal as an image, it can be both visually interpreted by physicians and technicians and detected by the network, offering a straightforward way of explaining the decision. The identification of this pattern is used to implement a P300-based speller device, which can serve as an alternative communication channel for persons affected by amyotrophic lateral sclerosis (ALS). This method is validated by identifying this signal by performing a brain-computer interface simulation on a public dataset from ALS patients. Letter identification rates from the speller on the dataset show that this method can identify the P300 signature on the set of 8 patients. The proposed approach achieves similar performance to other state-of-the-art proposals while providing clinically relevant explainability (XAI).

16.
Int J Biol Macromol ; 277(Pt 4): 134580, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39122070

ABSTRACT

Although therapeutic targets for colorectal cancer (CRC) treatment have been developed, the treatment outcomes are not ideal and survival rates for CRC patients remain low. It is critical to identify a specific target and develop an effective CRC treatment system. The ZNF334 gene is a newly identified member of Zinc-finger proteins (ZNFs), which is essential for key biological processes associated with tumorigenesis. Abnormal epigenetic reprogramming of the ZNF334 gene promoter region decreases its expression in CRC and further induces the occurrence of CRC. Here, we clarified that P300 in CRC can regulate the H3K9/27 ac in the ZNF334 promoter. Furthermore, histone acetylation of the ZNF334 promoter region was increased by dCas9-P300 to normalize the deficiency of ZNF334 expression, thereby inhibiting the growth of CRC. Collectively, our findings enable a facile way to affect gene expression using CRISPR/Cas9-based epigenome editing and further determine the causal link between histone acetylation and gene activation, providing a promising gene therapy strategy for the CRC treatment.


Subject(s)
CRISPR-Cas Systems , Colorectal Neoplasms , Epigenesis, Genetic , Gene Editing , Gene Expression Regulation, Neoplastic , Humans , Colorectal Neoplasms/genetics , Colorectal Neoplasms/pathology , Gene Editing/methods , Acetylation , Cell Proliferation/genetics , Promoter Regions, Genetic/genetics , Animals , Cell Line, Tumor , Histones/metabolism , Mice , Acetyltransferases/genetics , Acetyltransferases/metabolism
17.
Neuroimage ; 298: 120781, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39127183

ABSTRACT

OBJECTIVE: To date the vast majority of research in the visual neurosciences have been forced to adopt a highly constrained perspective of the vision system in which stimuli are processed in an open-loop reactive fashion (i.e., abrupt stimulus presentation followed by an evoked neural response). While such constraints enable high construct validity for neuroscientific investigation, the primary outcomes have been a reductionistic approach to isolate the component processes of visual perception. In electrophysiology, of the many neural processes studied under this rubric, the most well-known is, arguably, the P300 evoked response. There is, however, relatively little known about the real-world corollary of this component in free-viewing paradigms where visual stimuli are connected to neural function in a closed-loop. While growing evidence suggests that neural activity analogous to the P300 does occur in such paradigms, it is an open question when this response occurs and what behavioral or environmental factors could be used to isolate this component. APPROACH: The current work uses convolutional networks to decode neural signals during a free-viewing visual search task in a closed-loop paradigm within an open-world virtual environment. From the decoded activity we construct fixation-locked response profiles that enable estimations of the variable latency of any P300 analogue around the moment of fixation. We then use these estimates to investigate which factors best reduce variable latency and, thus, predict the onset time of the response. We consider measurable, search-related factors encompassing top-down (i.e., goal driven) and bottom-up (i.e., stimulus driven) processes, such as fixation duration and salience. We also consider saccade size as an intermediate factor reflecting the integration of these two systems. MAIN RESULTS: The results show that of these factors only saccade size reliably determines the onset time of P300 analogous activity for this task. Specifically, we find that for large saccades the variability in response onset is small enough to enable analysis using traditional ensemble averaging methods. SIGNIFICANCE: The results show that P300 analogous activity does occur during closed-loop, free-viewing visual search while highlighting distinct differences between the open-loop version of this response and its real-world analogue. The results also further establish saccades, and saccade size, as a key factor in real-world visual processing.


Subject(s)
Saccades , Visual Perception , Humans , Male , Female , Adult , Young Adult , Saccades/physiology , Visual Perception/physiology , Virtual Reality , Event-Related Potentials, P300/physiology , Electroencephalography/methods , Reaction Time/physiology , Photic Stimulation/methods
18.
Int J Psychophysiol ; 204: 112424, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39178992

ABSTRACT

Economic decision-making plays a paramount role in both individual and national interests. Individuals have fairness preferences in economic decision-making, but a proposer's moral-related information may affect fairness considerations. In prior ERP studies, researchers have suggested moral identity influences fairness preferences in the Ultimatum Game (UG), but there are discrepancies in the results. Furthermore, whether role models (individuals whom someone else looks to help decide suitable behaviors), who can modulate people's moral standards, can affect fairness concerns in UG is still understudied. To address the questions, we selected the moral-related statements by eliminating those with illegal information and employed the ERP technique to explore whether the interplay of the proposer's role model and moral-related behavior influenced fairness processing in the modified UG and the corresponding neural mechanisms. We mainly found that the aforementioned interaction effect on proposal considerations in UG could be mirrored in both rejection rates and P300 variations. The results demonstrate that the interaction between the proposer's role model and moral behavior can modulate fairness concerns in UG. Our current work provides new avenues for elucidating the time course of the influencing mechanism of fair distributions in complicated social environments.


Subject(s)
Decision Making , Electroencephalography , Morals , Humans , Male , Female , Young Adult , Adult , Decision Making/physiology , Games, Experimental , Evoked Potentials/physiology , Event-Related Potentials, P300/physiology , Social Behavior
19.
Biomed Pharmacother ; 179: 117303, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39153437

ABSTRACT

The role of peroxisome proliferator-activated receptor (PPAR)ß/δ in hepatic fibrosis remains a subject of debate. Here, we examined the effects of a PPARß/δ agonist on the pathogenesis of liver fibrosis and the activation of hepatic stellate cells (HSCs), the main effector cells in liver fibrosis, in response to the pro-fibrotic stimulus transforming growth factor-ß (TGF-ß). The PPARß/δ agonist GW501516 completely prevented glucose intolerance and peripheral insulin resistance, blocked the accumulation of collagen in the liver, and attenuated the expression of inflammatory and fibrogenic genes in mice fed a choline-deficient high-fat diet (CD-HFD). The antifibrogenic effect of GW501516 observed in the livers CD-HFD-fed mice could occur through an action on HSCs since primary HSCs isolated from Ppard-/- mice showed increased mRNA levels of the profibrotic gene Col1a1. Moreover, PPARß/δ activation abrogated TGF-ß1-mediated cell migration (an indicator of cell activation) in LX-2 cells (immortalized activated human HSCs). Likewise, GW501516 attenuated the phosphorylation of the main downstream intracellular protein target of TGF-ß1, suppressor of mothers against decapentaplegic (SMAD)3, as well as the levels of the SMAD3 co-activator p300 via the activation of AMP-activated protein kinase (AMPK) and the subsequent inhibition of extracellular signal-regulated kinase-1/2 (ERK1/2) in LX-2 cells. Overall, these findings uncover a new mechanism by which the activation of AMPK by a PPARß/δ agonist reduces TGF-ß1-mediated activation of HSCs and fibrosis via the reduction of both SMAD3 phosphorylation and p300 levels.


Subject(s)
AMP-Activated Protein Kinases , E1A-Associated p300 Protein , Hepatic Stellate Cells , Liver Cirrhosis , Mice, Inbred C57BL , PPAR delta , PPAR-beta , Smad3 Protein , Hepatic Stellate Cells/metabolism , Hepatic Stellate Cells/drug effects , Hepatic Stellate Cells/pathology , Animals , Phosphorylation/drug effects , PPAR-beta/agonists , PPAR-beta/metabolism , PPAR-beta/genetics , Liver Cirrhosis/metabolism , Liver Cirrhosis/pathology , PPAR delta/metabolism , PPAR delta/agonists , PPAR delta/genetics , Smad3 Protein/metabolism , AMP-Activated Protein Kinases/metabolism , E1A-Associated p300 Protein/metabolism , Male , Mice , Humans , Thiazoles/pharmacology , Diet, High-Fat/adverse effects , Mice, Knockout , Insulin Resistance , Cell Line , Transforming Growth Factor beta1/metabolism
20.
J Biol Chem ; 300(9): 107642, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39122009

ABSTRACT

Our previous studies determined that elevating SOX2 in a wide range of tumor cells leads to a reversible state of tumor growth arrest. Efforts to understand how tumor cell growth is inhibited led to the discovery of a SOX2:MYC axis that is responsible for downregulating c-MYC (MYC) when SOX2 is elevated. Although we had determined that elevating SOX2 downregulates MYC transcription, the mechanism responsible was not determined. Given the challenges of targeting MYC clinically, we set out to identify how elevating SOX2 downregulates MYC transcription. In this study, we focused on the MYC promoter region and an upstream region of the MYC locus that contains a MYC super-enhancer encompassing five MYC enhancers and which is associated with several cancers. Here we report that BRD4 and p300 associate with each of the MYC enhancers in the upstream MYC super-enhancer as well as the MYC promoter region and that elevating SOX2 decreases the recruitment of BRD4 and p300 to these sites. Additionally, we determined that elevating SOX2 leads to increases in the association of SOX2 and H3K27me3 within the MYC super-enhancer and the promoter region of MYC. Importantly, we conclude that the increases in SOX2 within the MYC super-enhancer precipitate a cascade of events that culminates in the repression of MYC transcription. Together, our studies identify a novel molecular mechanism able to regulate MYC transcription in two distinctly different tumor types and provide new mechanistic insights into the molecular interrelationships between two master regulators, SOX2 and MYC, widely involved in multiple cancers.


Subject(s)
Cell Cycle Proteins , Enhancer Elements, Genetic , Promoter Regions, Genetic , Proto-Oncogene Proteins c-myc , SOXB1 Transcription Factors , Transcription Factors , Transcription, Genetic , Humans , SOXB1 Transcription Factors/metabolism , SOXB1 Transcription Factors/genetics , Proto-Oncogene Proteins c-myc/metabolism , Proto-Oncogene Proteins c-myc/genetics , Transcription Factors/metabolism , Transcription Factors/genetics , Cell Cycle Proteins/metabolism , Cell Cycle Proteins/genetics , Cell Line, Tumor , Gene Expression Regulation, Neoplastic , Nuclear Proteins/metabolism , Nuclear Proteins/genetics , E1A-Associated p300 Protein/metabolism , E1A-Associated p300 Protein/genetics , Bromodomain Containing Proteins
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