Optimization using the firefly algorithm of ensemble neural networks with type-2 fuzzy integration for COVID-19 time series prediction.

In this paper, the latest global COVID-19 pandemic prediction is addressed. Each country worldwide has faced this pandemic differently, reflected in its statistical number of confirmed and death cases. Predicting the number of confirmed and death cases could allow us to know the future number of cases and provide each country with the necessary information to make decisions based on the predictions. Recent works are focused only on confirmed COVID-19 cases or a specific country. In this work, the firefly algorithm designs an ensemble neural network architecture for each one of 26 countries. In this work, we propose the firefly algorithm for ensemble neural network optimization applied to COVID-19 time series prediction with type-2 fuzzy logic in a weighted average integration method. The proposed method finds the number of artificial neural networks needed to form an ensemble neural network and their architecture using a type-2 fuzzy inference system to combine the responses of individual artificial neural networks to perform a final prediction. The advantages of the type-2 fuzzy weighted average integration (FWA) method over the conventional average method and type-1 fuzzy weighted average integration are shown.

A Simple, Robust, and Affordable Bioluminescent Assay for Drug Screening Against Infective African Trypanosomes.

This chapter introduces a simple and robust in vitro viability assay to screen bioactive small molecules (e.g., natural, synthetic) against the monomorphic and infective (bloodstream) form of Trypanosoma brucei brucei. The assay relies on a bioluminescent transgenic parasite harboring a genetically encoded copy of a thermostable redshifted firefly luciferase from Photinus pyralis.The major advantages of the assay are simplicity and cost efficiency, along with excellent quality parameters. The bioassay allows estimating parasite numbers and viability (and metabolic state) as a function of bioluminescence (BL) signal. Parasites are grown in the presence of the molecules of interest in a 96-well microplate, and 24 h later, BL is determined with a simple protocol lacking washing steps, using cost-efficient reagents with a reasonable readout time for high-throughput applications.

A new species of Petalacmis firefly from Bolivia, with a key to species (Coleoptera, Lampyridae).

Petalacmis Olivier, 1908 is a poorly known genus of firefly endemic to South America and is currently the only member of the subfamily Lampyrinae, tribe Lampyrini known to occur on the continent. Here, we describe a new species, Petalacmistriplehorni sp. nov. from Bolivia and compare it to the two other described species in the genus. A key to Petalacmis species based on male traits, as well as illustrations of morphological features, are given in detail for the first time. We present unique, previously neglected traits of Petalacmis species and compare them to other Lampyrinae.

Cloning and molecular properties of a novel luciferase from the Brazilian Bicellonycha lividipennis (Lampyridae: Photurinae) firefly: comparison with other firefly luciferases.

Several firefly luciferases eliciting light emission in the yellow-green range of the spectrum and with distinct kinetic properties have been already cloned, sequenced, and characterized. Some of them are currently being applied as analytical reagents and reporter genes for bioimaging and biosensors, and more recently as potential color tuning indicators of intracellular pH and toxic metals. They were cloned from the subfamilies Lampyrinae (Photinini: Photinus pyralis, Macrolampis sp2; Cratomorphini: Cratomorphus distinctus), Photurinae (Photuris pennsylvanica), Luciolinae (Luciola cruciata, L. lateralis, L. mingrelica, L. italica, Hotaria parvula), and Amydetinae (Amydetes vivianii) occurring in different parts of the world. The largest number has been cloned from fireflies occurring in Brazilian biomes. Taking advantage of the large biodiversity of fireflies occurring in the Brazilian Atlantic rainforest, here we report the cloning and characterization of a novel luciferase cDNA from the Photurinae subfamily, Bicellonycha lividipennis, which is a very common firefly in marshlands in Brazil. As expected, multialignements and phylogenetic analysis show that this luciferase clusters with Photuris pennsylvanica adult isozyme, and with other adult lantern firefly luciferases, in reasonable agreement with traditional phylogenetic analysis. The luciferase elicits light emission in the yellow-green region, has kinetics properties similar to other adult lantern firefly luciferases, including pH- and metal sensitivities, but displays a lower sensitivity to nickel, which is suggested to be caused by the natural substitution of H310Y.

Development and validation of software that quantifies the larval mortality of Rhipicephalus (Boophilus) microplus cattle tick.

Rhipicephalus (Boophilus) microplus is controlled almost exclusively using synthetic acaricides, and reports of resistant populations have been described worldwide. Several time-consuming and laborious toxicological in vitro tests have been used to diagnose acaricidal resistance, especially those that require differential counting of live and dead larvae. Larval mortality is currently done manually and subjectively, which can limit the performance of a large number of tests and comparing results between different laboratories. The present study aimed to develop and validate a new automatic counting method to evaluate tick larval mortality. A software for differentiation of live and dead larvae was developed using different steps: obtaining videos; image segmentation using the firefly algorithm; detection of larvae with the fast radial symmetry transform technique (FRST); and tracking of the larvae at a given time. Larval immersion tests with ivermectin, cypermethrin, and fipronil were performed to validate the developed software. The larval mortality evaluation was performed by (1) recording for 60 s for each package and (2) manual counts of the same sample using three different analysts, each responsible for counting one replicate of each test. All videos obtained were copied and cut at 60, 40, and 20 s for later analysis in the counting software. The median lethal doses (LD50) of the different compounds in each test were calculated for each method (automatic and manual) for different video times. There was no statistical difference in LD50 between manual and automatic count techniques for ivermectin and fipronil. The LD50 of cypermethrin calculated with manual evaluation was up to 2.2 times lower than that of automatic evaluation. The acquisition time of the videos was 2.9-4.4 times faster than the manual evaluation. The average processing time for each video was 5.73 min, regardless of their duration. Thus, the method developed for automatic counting of tick larvae was validated, and although it still has points to be optimized, it can be considered a viable alternative for determining the percentage of tick larvae mortality and could be applied to toxicological in vitro tests with acaricides, assisting in the diagnosis of resistant tick populations and studies of novel acaricide development.

Morphology of immature stages of Pyrearinus pumilus (Candèze, 1863 (Coleoptera: Elateridae: Pyrophorini): the click beetle responsible for the luminous canga caves in the state of Pará, Brazil.

The Pyrearinus pumilus species group from South America includes luminescent click beetles (Agrypninae: Pyrophorini) associated with the phenomena of "luminescent termite mounds" and "luminous canga caves". The latter was recently reported in the state of Pará, Brazil. This group includes six species based on the morphology of adults, of which two have immature stages already described. In this work we present the morphology and biological aspects of mature larva and pupa of Pyrearinus pumilus (Candèze, 1863), from the canga caves. Moreover, we provide a key and illustrations for identification of male adults and the known larvae. Our study shows that: (1) morphological characters of immatures support the close relationship of P. pumilus with their allies in the P. pumilus species group; (2) the traits of the known larvae of the P. pumilus species group are reliable for species identification.

Analysis of miRNA expression in patients with rheumatoid arthritis during remission and relapse after a 5-year trial of tofacitinib treatment.

The physiopathology of rheumatoid arthritis (RA) is mediated by proinflammatory cytokines, some of which are regulated by the JAK/STAT pathway. Tofacitinib is a JAK inhibitor, but its role in the regulation of microRNAs (miRNAs) is unknown. There is also no information regarding the role of miRNAs in the clinical relapse/remission of RA. The present project aims to identify a signature profile of miRNA expression in a subgroup of RA patients who had to discontinue tofacitinib treatment (because of the ending of a 5-year open-label clinical trial) and to describe the expression of miRNAs during RA remission or flare-up. The relative expression of 61 miRNAs was determined in serum samples with the Firefly™ BioWorks assay. Statistical analysis was performed by means of Student's t-test and heatmap analysis was performed with Firefly™ Analysis Workbench software and in the software GraphPad® Prism v5.0. Target prediction and Gene Ontology analysis were carried out using bioinformatic tools. We found a distinctive signature of miRNA expression associated with relapse, featuring upregulated expression of hsa­miR­432­5p (p < 0.05). We also found upregulation of hsa­miR­194­5p (p < 0.05) in samples of patients with RA flare-up. Gene Ontology analysis of the target genes for hsa­miR­432­5p was performed to identify relevant pathways associated with relapse; the implications of these pathways in the physiopathology of RA are discussed. Tofacitinib treatment does not have a direct effect on the expression of measured miRNAs. The changes in hsa­miR­432­5p and hsa­miR­194­5p are associated with the regulation of proinflammatory pathways and RA flare-up.

Preparation and Assay of Simple Light off Biosensor Based on Immobilized Bioluminescent Bacteria for General Toxicity Assays.

We describe a simple light off bioluminescent biosensor for general environmental toxicity assays based on immobilized bioluminescent bacteria engineered with beetle luciferases.

Description of the larva of Alampoides alychnus (Kirsch, 1873), the first known species with bioluminescent immatures in Euplinthini (Elateridae, Agrypninae)

Mature larva of Alampoides alychnus (Kirsch) is described and compared to known Pyrophorini immatures. Larvae were collected live in the soil of a region dominated by sugarcane plantation and gallery forest in Campo Novo dos Parecis, Mato Grosso, Brazil. They were maintained in laboratory and the pupal period lasted 14 days. This larva differs from other Pyrophorini larvae mainly by bioluminescent pattern: one pair of luminous spots on the mesonotum, and a longitudinal series of median spots on the metanotum and all abdominal segments. The morphology of larva and the bioluminescent pattern of larva and pupa are described for the first time to the genus and the tribe. The fact that adults show no trace of luminescence is emphasized.

Description of the larva of Alampoides alychnus (Kirsch, 1873), the first known species with bioluminescent immatures in Euplinthini (Elateridae, Agrypninae)

Mature larva of Alampoides alychnus (Kirsch) is described and compared to known Pyrophorini immatures. Larvae were collected live in the soil of a region dominated by sugarcane plantation and gallery forest in Campo Novo dos Parecis, Mato Grosso, Brazil. They were maintained in laboratory and the pupal period lasted 14 days. This larva differs from other Pyrophorini larvae mainly by bioluminescent pattern: one pair of luminous spots on the mesonotum, and a longitudinal series of median spots on the metanotum and all abdominal segments. The morphology of larva and the bioluminescent pattern of larva and pupa are described for the first time to the genus and the tribe. The fact that adults show no trace of luminescence is emphasized.(AU)

Second record of bioluminescence in larvae of Xantholinus Dejean (Staphylinidae, Xantholinini) from Brazil / Segundo registro de bioluminescência em larvas de Xantholinus Dejean (Staphylinidae, Xantholinini) do Brasil

Second record of bioluminescence in larvae of Xantholinus Dejean, (Staphylinidae, Xantholinini) from Brazil. Bioluminescent Xantholinus larvae (Xantholinini, Staphylinidae) were collected in the Cerrado biome of Mato Grosso state, Brazil. These larvae are morphologically similar to the first bioluminescent larvae of this genus collected in the Atlantic Forest in São Paulo state; however they differ by their bioluminescent emission.

Larvas de Xantholinus sp. (Xantholinini, Staphylinidae) foram coletadas no Cerrado do estado do Mato Grosso. Essas larvas são similares às primeiras larvas bioluminescentes do mesmo gênero coletadas na Floresta Atlântica em São Paulo, mas diferem pela emissão da bioluminescência.

New species of Ignelater Costa (Coleoptera, Elateridae, Pyrophorini)

Ignelater inaguensis sp. nov. from Bahamas, Great Inagua Island is described, illustrated and compared to other Ignelater species. This species is characterized mainly by its elytra, slightly widened from humerus up to the middle or posterior third and the length ratio between elytra and pronotum 2.51-2.71.

Ignelater inaguensis sp. nov. de Bahamas, Ilha Great Inagua, é descrita, ilustrada e comparada às outras espécies de Ignelater. Essa espécie é caracterizada principalmente pelos élitros levemente alargados do úmero até aproximadamente a metade ou o terço posterior e pela proporção entre os comprimentos do élitro e do pronoto entre 2,51-2,71.

New species of Ignelater Costa (Coleoptera, Elateridae, Pyrophorini)

Ignelater inaguensis sp. nov. from Bahamas, Great Inagua Island is described, illustrated and compared to other Ignelater species. This species is characterized mainly by its elytra, slightly widened from humerus up to the middle or posterior third and the length ratio between elytra and pronotum 2.51-2.71.

Ignelater inaguensis sp. nov. de Bahamas, Ilha Great Inagua, é descrita, ilustrada e comparada às outras espécies de Ignelater. Essa espécie é caracterizada principalmente pelos élitros levemente alargados do úmero até aproximadamente a metade ou o terço posterior e pela proporção entre os comprimentos do élitro e do pronoto entre 2,51-2,71.

Description of Photuris fulvipes (Blanchard) immatures (Coleoptera, Lampyridae, Photurinae) and bionomic aspects under laboratory conditions

Larvae and pupae of the cryptic firefly Photuris fulvipes (Blanchard,1837) are described. They were reared to adult stage from eggs laid by a female collected in São Luiz do Paraitinga, São Paulo, Brazil. Additionally, adult diagnosis and some bionomic data observed in the laboratory are presented. The bionomical and morphological characteristics of P. fulvipes were compared to other unidentified species of the genus and to Bycellonycha sp. from literature. At moment, the data are insufficient to propose a diagnosis for the species, but some characteristics appear to define species group or, at least, they may have generic value.

Larva e pupa de Photuris fulvipes (Blanchard, 1837), criadas a partir de ovos de uma fêmea coletada em São Luiz do Paraitinga, São Paulo, são descritas. São apresentados uma diagnose do adulto e alguns dados bionômicos observados durante a criação em laboratório. Esses dados e a morfologia dos imaturos foram comparados aos de outras espécies não identificadas do gênero e a Bycellonycha sp., descritos na literatura. Nesse momento, os dados são insuficientes para propor uma diagnose para a espécie, mas algumas características parecem ser importantes para definir grupos de espécies ou, pelo menos, para diagnosticar o gênero.