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1.
Med Phys ; 2024 Sep 04.
Article in English | MEDLINE | ID: mdl-39231014

ABSTRACT

BACKGROUND: Low-dose computed tomography (LDCT) can mitigate potential health risks to the public. However, the severe noise and artifacts in LDCT images can impede subsequent clinical diagnosis and analysis. Convolutional neural networks (CNNs) and Transformers stand out as the two most popular backbones in LDCT denoising. Nonetheless, CNNs suffer from a lack of long-range modeling capabilities, while Transformers are hindered by high computational complexity. PURPOSE: In this study, our main goal is to develop a simple and efficient model that can both focus on local spatial context and model long-range dependencies with linear computational complexity for LDCT denoising. METHODS: In this study, we make the first attempt to apply the State Space Model to LDCT denoising and propose a novel LDCT denoising model named Visual Mamba Encoder-Decoder Network (ViMEDnet). To efficiently and effectively capture both the local and global features, we propose the Mixed State Space Module (MSSM), where the depth-wise convolution, max-pooling, and 2D Selective Scan Module (2DSSM) are coupled together through a partial channel splitting mechanism. 2DSSM is capable of capturing global information with linear computational complexity, while convolution and max-pooling can effectively learn local signals to facilitate detail restoration. Furthermore, the network uses a weighted gradient-sensitive hybrid loss function to facilitate the preservation of image details, improving the overall denoising performance. RESULTS: The performance of our proposed ViMEDnet is compared to five state-of-the-art LDCT denoising methods, including an iterative algorithm, two CNN-based methods, and two Transformer-based methods. The comparative experimental results demonstrate that the proposed ViMEDnet can achieve better visual quality and quantitative assessment outcomes. In visual evaluation, ViMEDnet effectively removes noise and artifacts, while exhibiting superior performance in restoring fine structures and low-contrast structural edges, resulting in minimal deviation of denoised images from NDCT. In quantitative assessment, ViMEDnet obtains the lowest RMSE and the highest PSNR, SSIM, and FSIM scores, further substantiating the superiority of ViMEDnet. CONCLUSIONS: The proposed ViMEDnet possesses excellent LDCT denoising performance and provides a new alternative to LDCT denoising models beyond the existing CNN and Transformer options.

2.
Mov Ecol ; 12(1): 59, 2024 Sep 02.
Article in English | MEDLINE | ID: mdl-39223688

ABSTRACT

BACKGROUND: Recent technological advances have resulted in low-cost GPS loggers that are small enough to be used on a range of seabirds, producing accurate location estimates (± 5 m) at sampling intervals as low as 1 s. However, tradeoffs between battery life and sampling frequency result in studies using GPS loggers on flying seabirds yielding locational data at a wide range of sampling intervals. Metrics derived from these data are known to be scale-sensitive, but quantification of these errors is rarely available. Very frequent sampling, coupled with limited movement, can result in measurement error, overestimating movement, but a much more pervasive problem results from sampling at long intervals, which grossly underestimates path lengths. METHODS: We use fine-scale (1 Hz) GPS data from a range of albatrosses and petrels to study the effect of sampling interval on metrics derived from the data. The GPS paths were sub-sampled at increasing intervals to show the effect on path length (i.e. ground speed), turning angles, total distance travelled, as well as inferred behavioural states. RESULTS: We show that distances (and per implication ground speeds) are overestimated (4% on average, but up to 20%) at the shortest sampling intervals (1-5 s) and underestimated at longer intervals. The latter bias is greater for more sinuous flights (underestimated by on average 40% when sampling > 1-min intervals) as opposed to straight flight (11%). Although sample sizes were modest, the effect of the bias seemingly varied with species, where species with more sinuous flight modes had larger bias. Sampling intervals also played a large role when inferring behavioural states from path length and turning angles. CONCLUSIONS: Location estimates from low-cost GPS loggers are appropriate to study the large-scale movements of seabirds when using coarse sampling intervals, but actual flight distances are underestimated. When inferring behavioural states from path lengths and turning angles, moderate sampling intervals (10-30 min) may provide more stable models, but the accuracy of the inferred behavioural states will depend on the time period associated with specific behaviours. Sampling rates have to be considered when comparing behaviours derived using varying sampling intervals and the use of bias-informed analyses are encouraged.

3.
Ecol Appl ; : e3021, 2024 Sep 01.
Article in English | MEDLINE | ID: mdl-39219158

ABSTRACT

Shrinking saline lakes provide irreplaceable habitat for waterbird species globally. Disentangling the effects of wetland habitat loss from other drivers of waterbird population dynamics is critical for protecting these species in the face of unprecedented changes to saline lake ecosystems, ideally through decision-making frameworks that identify effective management options and their potential outcomes. Here, we develop a framework to assess the effects of hypothesized population drivers and identify potential future outcomes of plausible management scenarios on a saline lake-reliant waterbird species. We use 36 years of monitoring data to quantify the effects of environmental conditions on the population size of a regionally important breeding colony of American white pelicans (Pelecanus erythrorhynchos) at Great Salt Lake, Utah, US, then forecast colony abundance under various management scenarios. We found that low lake levels, which allow terrestrial predators access to the colony, are probable drivers of recent colony declines. Without local management efforts, we predicted colony abundance could likely decline approximately 37.3% by 2040, although recent colony observations suggest population declines may be more extreme than predicted. Results from our population projection scenarios suggested that proactive approaches to preventing predator colony access and reversing saline lake declines are crucial for the persistence of the Great Salt Lake pelican colony. Increasing wetland habitat and preventing predator access to the colony together provided the most effective protection, increasing abundance 145.4% above projections where no management actions are taken, according to our population projection scenarios. Given the importance of water levels to the persistence of island-nesting colonial species, proactive approaches to reversing saline lake declines could likely benefit pelicans as well as other avian species reliant on these unique ecosystems.

4.
Sci Rep ; 14(1): 18103, 2024 Aug 05.
Article in English | MEDLINE | ID: mdl-39103478

ABSTRACT

This paper presents a novel approach to the phase space reconstruction technique, fractional-order phase space reconstruction (FOSS), which generalizes the traditional integer-order derivative-based method. By leveraging fractional derivatives, FOSS offers a novel perspective for understanding complex time series, revealing unique properties not captured by conventional methods. We further develop the multi-span transition entropy component method (MTECM-FOSS), an advanced complexity measurement technique that builds upon FOSS. MTECM-FOSS decomposes complexity into intra-sample and inter-sample components, providing a more comprehensive understanding of the dynamics in multivariate data. In simulated data, we observe that lower fractional orders can effectively filter out random noise. Time series with diverse long- and short-term memory patterns exhibit distinct extremities at different fractional orders. In practical applications, MTECM-FOSS exhibits competitive or superior classification performance compared to state-of-the-art algorithms when using fewer features, indicating its potential for engineering tasks.

5.
Materials (Basel) ; 17(15)2024 Jul 26.
Article in English | MEDLINE | ID: mdl-39124358

ABSTRACT

Hysteresis is a fundamental characteristic of magnetic materials. The Jiles-Atherton (J-A) hysteresis model, which is known for its few parameters and clear physical interpretations, has been widely employed in simulating hysteresis characteristics. To better analyze and compute hysteresis behavior, this study established a state space representation based on the primitive J-A model. First, based on the five fundamental equations of the J-A model, a state space representation was established through variable substitution and simplification. Furthermore, to address the singularity problem at zero crossings, local linearization was obtained through an approximation method based on the actual physical properties. Based on these, the state space model was implemented using the S-function. To validate the effectiveness of the state space model, the hysteresis loops were obtained through COMSOL finite element software and tested on a permalloy toroidal sample. The particle swarm optimization (PSO) method was used for parameter identification of the state space model, and the identification results show excellent agreement with the simulation and test results. Finally, a closed-loop control system was constructed based on the state space model, and trajectory tracking experiments were conducted. The results verify the feasibility of the state space representation of the J-A model, which holds significant practical implications in the development of magnetically shielded rooms, the suppression of magnetic interference in cold atom clocks, and various other applications.

6.
Eur J Investig Health Psychol Educ ; 14(8): 2230-2247, 2024 Aug 03.
Article in English | MEDLINE | ID: mdl-39194943

ABSTRACT

Aggressive student behavior is considered one of the main risk factors for teacher stress. The present study investigated teachers' physiological and behavioral reactions when facing aggressive student behavior and examined which resources favor adaptive teacher reactions. The sample included 42 teachers. We assessed (a) teacher self-reports (i.e., resources, risk factors, and vital exhaustion) (b) classroom observations, (c) ambulatory assessments of teachers' heart rate and heart rate variability, and (d) teachers' progesterone concentrations in the hair. The present study focused on a subsample of ten teachers (9 females, Mage = 34.70, SD = 11.32) managing classes which were potentially very stressful as they had a high density of aggressive behavior. High levels of work satisfaction, hair progesterone, and a low level of work overload fostered social integrative teacher responses. Moreover, in 75% of the cases, teachers succeeded in downregulating their physiological reaction. Our results support the notion that teachers evaluate stressors in light of their resources. When they perceive their resources as insufficient for coping with a challenging situation, stress arises, and subsequently, they react inefficiently to aggressive behavior. Thus, teacher education could benefit from strengthening teacher resources and strategies for coping with aggressive student behavior.

7.
Proc Natl Acad Sci U S A ; 121(35): e2402697121, 2024 Aug 27.
Article in English | MEDLINE | ID: mdl-39172785

ABSTRACT

Plants sense and respond to environmental cues during 24 h fluctuations in their environment. This requires the integration of internal cues such as circadian timing with environmental cues such as light and temperature to elicit cellular responses through signal transduction. However, the integration and transduction of circadian and environmental signals by plants growing in natural environments remains poorly understood. To gain insights into 24 h dynamics of environmental signaling in nature, we performed a field study of signal transduction from the nucleus to chloroplasts in a natural population of Arabidopsis halleri. Using several modeling approaches to interpret the data, we identified that the circadian clock and temperature are key regulators of this pathway under natural conditions. We identified potential time-delay steps between pathway components, and diel fluctuations in the response of the pathway to temperature cues that are reminiscent of the process of circadian gating. We found that our modeling framework can be extended to other signaling pathways that undergo diel oscillations and respond to environmental cues. This approach of combining studies of gene expression in the field with modeling allowed us to identify the dynamic integration and transduction of environmental cues, in plant cells, under naturally fluctuating diel cycles.


Subject(s)
Arabidopsis , Circadian Clocks , Circadian Rhythm , Signal Transduction , Arabidopsis/genetics , Arabidopsis/physiology , Arabidopsis/metabolism , Circadian Rhythm/physiology , Circadian Clocks/physiology , Gene Expression Regulation, Plant , Temperature , Chloroplasts/metabolism , Chloroplasts/genetics , Light , Environment , Models, Biological , Arabidopsis Proteins/metabolism , Arabidopsis Proteins/genetics , Cell Nucleus/metabolism
8.
Cell Rep Med ; 5(8): 101681, 2024 Aug 20.
Article in English | MEDLINE | ID: mdl-39127039

ABSTRACT

Clinical studies investigating the benefits of beta-lactam therapeutic drug monitoring (TDM) among critically ill patients are hindered by small patient groups, variability between studies, patient heterogeneity, and inadequate use of TDM. Accordingly, definitive conclusions regarding the efficacy of TDM remain elusive. To address these challenges, we propose an innovative approach that leverages data-driven methods to unveil the concealed connections between therapy effectiveness and patient data, collected through a randomized controlled trial (DRKS00011159; 10th October 2016). Our findings reveal that machine learning algorithms can successfully identify informative features that distinguish between healthy and sick states. These hold promise as potential markers for disease classification and severity stratification, as well as offering a continuous and data-driven "multidimensional" Sequential Organ Failure Assessment (SOFA) score. The positive impact of TDM on patient recovery rates is demonstrated by unraveling the intricate connections between therapy effectiveness and clinically relevant data via machine learning.


Subject(s)
Drug Monitoring , Machine Learning , Sepsis , Humans , Sepsis/drug therapy , Sepsis/diagnosis , Drug Monitoring/methods , Male , Female , Middle Aged , Aged , beta-Lactams/therapeutic use , Anti-Bacterial Agents/therapeutic use , Algorithms , Critical Illness , Organ Dysfunction Scores
9.
Res Sq ; 2024 Aug 06.
Article in English | MEDLINE | ID: mdl-39149454

ABSTRACT

On average, more than 5 million patients are admitted to intensive care units (ICUs) in the US, with mortality rates ranging from 10 to 29%. The acuity state of patients in the ICU can quickly change from stable to unstable, sometimes leading to life-threatening conditions. Early detection of deteriorating conditions can assist in more timely interventions and improved survival rates. While Artificial Intelligence (AI)-based models show potential for assessing acuity in a more granular and automated manner, they typically use mortality as a proxy of acuity in the ICU. Furthermore, these methods do not determine the acuity state of a patient (i.e., stable or unstable), the transition between acuity states, or the need for life-sustaining therapies. In this study, we propose APRICOT-M (Acuity Prediction in Intensive Care Unit-Mamba), a 1M-parameter state space-based neural network to predict acuity state, transitions, and the need for life-sustaining therapies in real-time among ICU patients. The model integrates ICU data in the preceding four hours (including vital signs, laboratory results, assessment scores, and medications) and patient characteristics (age, sex, race, and comorbidities) to predict the acuity outcomes in the next four hours. Our state space-based model can process sparse and irregularly sampled data without manual imputation, thus reducing the noise in input data and increasing inference speed. The model was trained on data from 107,473 patients (142,062 ICU admissions) from 55 hospitals between 2014-2017 and validated externally on data from 74,901 patients (101,356 ICU admissions) from 143 hospitals. Additionally, it was validated temporally on data from 12,927 patients (15,940 ICU admissions) from one hospital in 2018-2019 and prospectively on data from 215 patients (369 ICU admissions) from one hospital in 2021-2023. Three datasets were used for training and evaluation: the University of Florida Health (UFH) dataset, the electronic ICU Collaborative Research Database (eICU), and the Medical Information Mart for Intensive Care (MIMIC)-IV dataset. APRICOT-M significantly outperforms the baseline acuity assessment, Sequential Organ Failure Assessment (SOFA), for mortality prediction in both external (AUROC 0.95 CI: 0.94-0.95 compared to 0.78 CI: 0.78-0.79) and prospective (AUROC 0.99 CI: 0.97-1.00 compared to 0.80 CI: 0.65-0.92) cohorts, as well as for instability prediction (external AUROC 0.75 CI: 0.74-0.75 compared to 0.51 CI: 0.51-0.51, and prospective AUROC 0.69 CI: 0.64-0.74 compared to 0.53 CI: 0.50-0.57). This tool has the potential to help clinicians make timely interventions by predicting the transition between acuity states and decision-making on life-sustaining within the next four hours in the ICU.

10.
Elife ; 132024 Aug 15.
Article in English | MEDLINE | ID: mdl-39146208

ABSTRACT

Modern neurophysiological recordings are performed using multichannel sensor arrays that are able to record activity in an increasingly high number of channels numbering in the 100s to 1000s. Often, underlying lower-dimensional patterns of activity are responsible for the observed dynamics, but these representations are difficult to reliably identify using existing methods that attempt to summarize multivariate relationships in a post hoc manner from univariate analyses or using current blind source separation methods. While such methods can reveal appealing patterns of activity, determining the number of components to include, assessing their statistical significance, and interpreting them requires extensive manual intervention and subjective judgment in practice. These difficulties with component selection and interpretation occur in large part because these methods lack a generative model for the underlying spatio-temporal dynamics. Here, we describe a novel component analysis method anchored by a generative model where each source is described by a bio-physically inspired state-space representation. The parameters governing this representation readily capture the oscillatory temporal dynamics of the components, so we refer to it as oscillation component analysis. These parameters - the oscillatory properties, the component mixing weights at the sensors, and the number of oscillations - all are inferred in a data-driven fashion within a Bayesian framework employing an instance of the expectation maximization algorithm. We analyze high-dimensional electroencephalography and magnetoencephalography recordings from human studies to illustrate the potential utility of this method for neuroscience data.


Subject(s)
Electroencephalography , Models, Neurological , Humans , Electroencephalography/methods , Magnetoencephalography/methods , Brain/physiology , Bayes Theorem
11.
J Psychiatr Res ; 178: 210-218, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39153454

ABSTRACT

Social deficits in schizophrenia have been attributed to an impaired attunement to mutual interaction, or "interaffectivity". While impairments in emotion recognition and facial expressivity in schizophrenia have been consistently reported, findings on mimicry and social synchrony are inconsistent, and previous studies have often lacked ecological validity. To investigate interaffective behavior in dyadic interactions in a real-world-like setting, 20 individuals with schizophrenia and 20 without mental disorder played a cooperative board game with a previously unacquainted healthy control participant. Facial expression analysis was conducted using Affectiva Emotion AI in iMotions 9.3. The contingency and state space distribution of emotional facial expressions was assessed using Mangold INTERACT. Psychotic symptoms, subjective stress, affectivity and game experience were evaluated through questionnaires. Due to a considerable between-group age difference, age-adjusted ANCOVA was performed. Overall, despite an unchanged subjective experience of the social interaction, individuals with schizophrenia exhibited reduced responsiveness to positive affective stimuli. Subjective game experience did not differ between groups. Descriptively, facial expressions in schizophrenia were generally more negative, with increased sadness and decreased joy. Facial mimicry was impaired specifically regarding joyful expressions in schizophrenia, which correlated with blunted affect as measured by the SANS. Dyadic interactions involving persons with schizophrenia were less attracted toward mutual joyful affective states. Only unadjusted for age, in the absence of emotional stimuli from their interaction partner, individuals with schizophrenia showed more angry and sad expressions. These impairments in interaffective processes may contribute to social dysfunction in schizophrenia and provide new avenues for future research.


Subject(s)
Facial Expression , Schizophrenia , Social Interaction , Humans , Male , Adult , Female , Schizophrenia/physiopathology , Middle Aged , Facial Recognition/physiology , Schizophrenic Psychology , Emotions/physiology , Artificial Intelligence , Young Adult
12.
IEEE Open J Eng Med Biol ; 5: 627-636, 2024.
Article in English | MEDLINE | ID: mdl-39184959

ABSTRACT

Goal: Poor arousal management may lead to reduced cognitive performance. Specifying a model and decoder to infer the cognitive arousal and performance contributes to arousal regulation via non-invasive actuators such as music. Methods: We employ a Bayesian filtering approach within an expectation-maximization framework to track the hidden states during the [Formula: see text]-back task in the presence of calming and exciting music. We decode the arousal and performance states from the skin conductance and behavioral signals, respectively. We derive an arousal-performance model based on the Yerkes-Dodson law. We design a performance-based arousal decoder by considering the corresponding performance and skin conductance as the observation. Results: The quantified arousal and performance are presented. The existence of Yerkes-Dodson law can be interpreted from the arousal-performance relationship. Findings display higher matrices of performance within the exciting music. Conclusions: The performance-based arousal decoder has a better agreement with the Yerkes-Dodson law. Our study can be implemented in designing non-invasive closed-loop systems.

13.
J R Soc Interface ; 21(216): 20230682, 2024 Jul.
Article in English | MEDLINE | ID: mdl-39081111

ABSTRACT

Monitoring disease progression often involves tracking biomarker measurements over time. Joint models (JMs) for longitudinal and survival data provide a framework to explore the relationship between time-varying biomarkers and patients' event outcomes, offering the potential for personalized survival predictions. In this article, we introduce the linear state space dynamic survival model for handling longitudinal and survival data. This model enhances the traditional linear Gaussian state space model by including survival data. It differs from the conventional JMs by offering an alternative interpretation via differential or difference equations, eliminating the need for creating a design matrix. To showcase the model's effectiveness, we conduct a simulation case study, emphasizing its performance under conditions of limited observed measurements. We also apply the proposed model to a dataset of pulmonary arterial hypertension patients, demonstrating its potential for enhanced survival predictions when compared with conventional risk scores.


Subject(s)
Models, Statistical , Humans , Longitudinal Studies , Survival Analysis
14.
Ann Work Expo Health ; 2024 Jul 24.
Article in English | MEDLINE | ID: mdl-39046904

ABSTRACT

A series of experiments in stationary and moving passenger rail cars were conducted to measure removal rates of particles in the size ranges of SARS-CoV-2 viral aerosols and the air changes per hour provided by existing and modified air handling systems. Such methods for exposure assessments are customarily based on mechanistic models derived from physical laws of particle movement that are deterministic and do not account for measurement errors inherent in data collection. The resulting analysis compromises on reliably learning about mechanistic factors such as ventilation rates, aerosol generation rates, and filtration efficiencies from field measurements. This manuscript develops a Bayesian state-space modeling framework that synthesizes information from the mechanistic system as well as the field data. We derive a stochastic model from finite difference approximations of differential equations explaining particle concentrations. Our inferential framework trains the mechanistic system using the field measurements from the chamber experiments and delivers reliable estimates of the underlying physical process with fully model-based uncertainty quantification. Our application falls within the realm of the Bayesian "melding" of mechanistic and statistical models and is of significant relevance to environmental hygienists and public health researchers working on assessing the performance of aerosol removal rates for rail car fleets.

15.
Oecologia ; 205(3-4): 461-471, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38995364

ABSTRACT

Individual predator and prey species exhibit coupled population dynamics in simple laboratory systems and simple natural communities. It is unclear how often such pairwise coupling occurs in more complex communities, in which an individual predator species might feed on several prey species and an individual prey species might be attacked by several predators. To examine this problem, we applied multivariate autoregressive state-space (MARSS) models to 5-year time-series of monthly surveys of a predatory fish, the eastern mosquitofish (Gambusia holbrooki), and its littoral zone prey species, the least killifish (Heterandria formosa), in three locations in north Florida. The MARSS models were consistent with coupled predator-prey dynamics at two of the three locations. In one of these two locations, the estimated densities of the two species displayed classic predator-prey oscillations. In the third location, there was a positive effect of killifish density on mosquitofish density but no detectable effect of mosquitofish density on killifish density. In all three locations, increased submergent vegetation cover was associated with increased prey density but not increased predator density. Eigenvalues analyses for the joint predator-prey dynamics indicated that one of the cyclic locations had more stable dynamics than the other locations. The three different patterns demonstrate that the dynamics of a pairwise predator-prey interaction emerge not only from the characteristics of the prey and the predator, but also those of the habitat and trophic web in which the predator and prey are embedded.


Subject(s)
Food Chain , Population Dynamics , Predatory Behavior , Animals , Florida , Cyprinodontiformes/physiology , Population Density , Ecosystem
16.
Cell Rep ; 43(7): 114412, 2024 Jul 23.
Article in English | MEDLINE | ID: mdl-38968075

ABSTRACT

A stimulus held in working memory is perceived as contracted toward the average stimulus. This contraction bias has been extensively studied in psychophysics, but little is known about its origin from neural activity. By training recurrent networks of spiking neurons to discriminate temporal intervals, we explored the causes of this bias and how behavior relates to population firing activity. We found that the trained networks exhibited animal-like behavior. Various geometric features of neural trajectories in state space encoded warped representations of the durations of the first interval modulated by sensory history. Formulating a normative model, we showed that these representations conveyed a Bayesian estimate of the interval durations, thus relating activity and behavior. Importantly, our findings demonstrate that Bayesian computations already occur during the sensory phase of the first stimulus and persist throughout its maintenance in working memory, until the time of stimulus comparison.


Subject(s)
Bayes Theorem , Animals , Models, Neurological , Neurons/physiology , Action Potentials/physiology , Nerve Net/physiology , Memory, Short-Term/physiology , Neural Networks, Computer
17.
Brain ; 2024 Jul 25.
Article in English | MEDLINE | ID: mdl-39052924

ABSTRACT

Brain-responsive neurostimulation is firmly ensconced among treatment options for drug-resistant focal epilepsy, but over a quarter of patients treated with the RNS System do not experience meaningful seizure reduction. Initial titration of RNS therapy is typically similar for all patients, raising the possibility that treatment response might be enhanced by consideration of patient-specific variables. Indeed, small, single-center studies have yielded preliminary evidence that RNS System effectiveness depends on the brain state during which stimulation is applied. The generalizability of these findings remains unclear, however, and it is unknown whether state-dependent effects of responsive neurostimulation are also stratified by location of the seizure onset zone where stimulation is delivered. We aimed to determine whether state-dependent effects of the RNS System are evident in the large, diverse, multi-center cohort of RNS System clinical trial participants and to test whether these effects differ between mesiotemporal and neocortical epilepsies. Eighty-one of 256 patients who were treated with the RNS System across 31 centers during clinical trials met criteria for inclusion in this retrospective study. Risk states were defined in relation to phases of daily and multi-day cycles of interictal epileptiform activity that are thought to determine seizure likelihood. We found that the probabilities of risk state transitions depended on the stimulation parameter being changed, the starting seizure risk state, and the stimulated brain region. Changes in two commonly adjusted stimulation parameters, charge density and stimulation frequency, produced opposite effects on risk state transitions depending on seizure localization. Greater variance in acute risk state transitions was explained by state-dependent responsive neurostimulation for bipolar stimulation for neocortical epilepsies and for monopolar stimulation for mesiotemporal epilepsies. Variability in effectiveness of RNS System therapy across individuals may relate, at least partly, to the fact that current treatment paradigms do not account fully for fluctuations in brain states or locations of simulation sites. State-dependence of electrical brain stimulation may inform development of next-generation closed-loop devices that can detect changes in brain state and deliver adaptive, localization-specific patterns of stimulation to maximize therapeutic effects.

18.
Psychometrika ; 2024 Jun 11.
Article in English | MEDLINE | ID: mdl-38861220

ABSTRACT

Intensive longitudinal (IL) data are increasingly prevalent in psychological science, coinciding with technological advancements that make it simple to deploy study designs such as daily diary and ecological momentary assessments. IL data are characterized by a rapid rate of data collection (1+ collections per day), over a period of time, allowing for the capture of the dynamics that underlie psychological and behavioral processes. One powerful framework for analyzing IL data is state-space modeling, where observed variables are considered measurements for underlying states (i.e., latent variables) that change together over time. However, state-space modeling has typically relied on continuous measurements, whereas psychological data often come in the form of ordinal measurements such as Likert scale items. In this manuscript, we develop a general estimation approach for state-space models with ordinal measurements, specifically focusing on a graded response model for Likert scale items. We evaluate the performance of our model and estimator against that of the commonly used "linear approximation" model, which treats ordinal measurements as though they are continuous. We find that our model resulted in unbiased estimates of the state dynamics, while the linear approximation resulted in strongly biased estimates of the state dynamics. Finally, we develop an approximate standard error, termed slice standard errors and show that these approximate standard errors are more liberal than true standard errors (i.e., smaller) at a consistent bias.

19.
Open Mind (Camb) ; 8: 688-722, 2024.
Article in English | MEDLINE | ID: mdl-38828434

ABSTRACT

Human cognition is unique in its ability to perform a wide range of tasks and to learn new tasks quickly. Both abilities have long been associated with the acquisition of knowledge that can generalize across tasks and the flexible use of that knowledge to execute goal-directed behavior. We investigate how this emerges in a neural network by describing and testing the Episodic Generalization and Optimization (EGO) framework. The framework consists of an episodic memory module, which rapidly learns relationships between stimuli; a semantic pathway, which more slowly learns how stimuli map to responses; and a recurrent context module, which maintains a representation of task-relevant context information, integrates this over time, and uses it both to recall context-relevant memories (in episodic memory) and to bias processing in favor of context-relevant features and responses (in the semantic pathway). We use the framework to address empirical phenomena across reinforcement learning, event segmentation, and category learning, showing in simulations that the same set of underlying mechanisms accounts for human performance in all three domains. The results demonstrate how the components of the EGO framework can efficiently learn knowledge that can be flexibly generalized across tasks, furthering our understanding of how humans can quickly learn how to perform a wide range of tasks-a capability that is fundamental to human intelligence.

20.
Front Neurol ; 15: 1304496, 2024.
Article in English | MEDLINE | ID: mdl-38774058

ABSTRACT

Introduction: Spatial orientation refers to the perception of relative location and self-motion in space. The accurate formation of spatial orientation is essential for animals to survive and interact safely with their environment. The formation of spatial orientation involves the integration of sensory inputs from the vestibular, visual, and proprioceptive systems. Vestibular organs function as specialized head motion sensors, providing information regarding angular velocity and linear acceleration via the semicircular canals and otoliths, respectively. However, because forces arising from the linear acceleration (translation) and inclination relative to the gravitational axis (tilt) are equivalent, they are indistinguishable by accelerometers, including otoliths. This is commonly referred to as the tilt - translation ambiguity, which can occasionally lead to the misinterpretation of translation as a tilt. The major theoretical frameworks addressing this issue have proposed that the interpretation of tilt versus translation may be contingent on an animal's previous experiences of motion. However, empirical confirmation of this hypothesis is lacking. Methods: In this study, we conducted a behavioral experiment using goldfish to investigate how an animal's motion experience influences its interpretation of tilt vs. translation. We examined a reflexive eye movement called the vestibulo-ocular reflex (VOR), which compensatory-rotates the eyes in response to head motion and is known to reflect an animal's three-dimensional head motion estimate. Results: We demonstrated that the VORs of naïve goldfish do not differentiate between translation and tilt at 0.5 Hz. However, following prolonged visual-translation training, which provided appropriate visual stimulation in conjunction with translational head motion, the VORs were capable of distinguishing between the two types of head motion within 3 h. These results were replicated using the Kalman filter model of spatial orientation, which incorporated the variable variance of process noise corresponding to the accumulated motion experience. Discussion: Based on these experimental and computational findings, we discuss the neural mechanism underlying the resolution of tilt-translation ambiguity within a context analogous to, yet distinct from, previous cross-axis VOR adaptations.

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