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1.
Clin Transl Oncol ; 23(3): 591-600, 2021 Mar.
Article in English | MEDLINE | ID: mdl-32720055

ABSTRACT

PURPOSE: Melanoma is a malignant skin tumor, and its incidence is rising. To explore the specific differences in benign and malignant melanoma at the genetic level, we performed a series of bioinformatics analyses, including differential gene analysis, co-expression analysis, enrichment analysis, and regulatory prediction. METHODS: The microarray data of benign and malignant melanocytes were downloaded from GEO, and 1917 differential genes were obtained by differential analysis (p < 0.05). Weighted gene co-expression network analysis obtained three functional barrier modules. The essential genes of each module are SMARTA4, HECA, and C1R. RESULTS: The results of the enrichment analysis showed that the dysfunctional module gene was mainly associated with RNA splicing and Adherens junction. Through the pivotal analysis of ncRNA, it was found that miR-448, miR-152-3p, and miR-302b-3p essentially regulate three modules, which we consider to be critical regulators. In the pivot analysis of TF, more control modules include ARID3A, E2F1, E2F3, and E2F8. CONCLUSIONS: We believe that the regulator (miR-448, miR-152-3p, miR-302b-3p) regulates the expression of the core gene SMARCA4, which in turn affects the signal transduction of the Adherens junction. It eventually leads to the deterioration of benign skin spasms into melanoma.


Subject(s)
Adherens Junctions/genetics , Cell Transformation, Neoplastic/genetics , DNA Helicases/genetics , Gene Regulatory Networks/genetics , Melanocytes , Melanoma/genetics , Nuclear Proteins/genetics , Skin Neoplasms/genetics , Transcription Factors/genetics , Cell Transformation, Neoplastic/pathology , Computational Biology , DNA-Binding Proteins , Databases, Genetic , E2F1 Transcription Factor , E2F3 Transcription Factor , Gene Expression Profiling , Gene Expression Regulation, Neoplastic , Humans , Melanocytes/pathology , Melanoma/pathology , MicroRNAs , Neoplasm Proteins/genetics , RNA Splicing/genetics , RNA, Messenger/genetics , RNA, Untranslated , Repressor Proteins , Signal Transduction , Skin Neoplasms/pathology , Tissue Array Analysis/methods , Melanoma, Cutaneous Malignant
2.
Pathol Oncol Res ; 25(1): 11-20, 2019 Jan.
Article in English | MEDLINE | ID: mdl-28944406

ABSTRACT

miRNAs have been identified as key regulators of almost all cellular processes, therefore, their dysregulation is involved with several diseases, including cancer. miRNAs specifically related to the metastastic cascade are called metastamiRs and can be involved with different steps of this process, including loss of adhesion. Osteosarcoma (OS) is the most common primary malignant pediatric bone tumor that often presents metastatic disease at diagnosis; therefore, a deeper study of adhesion-associated miRNAs could shed light on its pathophysiology. Online databases were used to select four miRNAs (miR-139; miR-181b; miR-584; miR-708) predicted or validated to target proteins related to adherent junctions and focal adhesion pathways, and their expression levels and possible associations with clinical features evaluated in primary OS samples. Our results showed downregulation of miR-139-5p and miR-708-5p in OS samples compared to non-neoplastic controls. Moreover, lower expression of miR-708-5p was associated with poor overall survival and higher expression of miR-181b-5p related to worst chemotherapy response (low HUVOS level). Based on these results, we selected miR-139-5p and miR-708-5p for further functional testing. Inducing the expression of miR-139-5p diminished the clonogenic capacity of the HOS cell line, while upregulation of miR-708-5p was related to a lower cellular adhesion. In summary, this work identified new signatures of microRNA dysregulation that may serve as useful prognostic markers in this aggressive pediatric bone tumor.


Subject(s)
Adherens Junctions/genetics , Biomarkers, Tumor/genetics , Bone Neoplasms/secondary , Focal Adhesions/genetics , Gene Expression Regulation, Neoplastic , MicroRNAs/genetics , Osteosarcoma/pathology , Adolescent , Adult , Bone Neoplasms/genetics , Bone Neoplasms/surgery , Case-Control Studies , Child , Child, Preschool , Female , Follow-Up Studies , Humans , Male , Osteosarcoma/genetics , Osteosarcoma/surgery , Prognosis , Survival Rate , Young Adult
3.
PLoS One ; 5(11): e13954, 2010 Nov 11.
Article in English | MEDLINE | ID: mdl-21085651

ABSTRACT

The retinoblastoma protein (pRb) is a cell cycle regulator inactivated in most human cancers. Loss of pRb function results from mutations in the gene coding for pRb or for any of its upstream regulators. Although pRb is predominantly known as a cell cycle repressor, our data point to additional pRb functions in cell adhesion. Our data show that pRb regulates the expression of a wide repertoire of cell adhesion genes and regulates the assembly of the adherens junctions required for cell adhesion. We conducted our studies in osteoblasts, which depend on both pRb and on cell-to-cell contacts for their differentiation and function. We generated knockout mice in which the RB gene was excised specifically in osteoblasts using the cre-lox P system and found that osteoblasts from pRb knockout mice did not assemble adherens junction at their membranes. pRb depletion in wild type osteoblasts using RNAi also disrupted adherens junctions. Microarrays comparing pRb-expressing and pRb-deficient osteoblasts showed that pRb controls the expression of a number of cell adhesion genes, including cadherins. Furthermore, pRb knockout mice showed bone abnormalities consistent with osteoblast adhesion defects. We also found that pRb controls the function of merlin, a well-known regulator of adherens junction assembly, by repressing Rac1 and its effector Pak1. Using qRT-PCR, immunoblots, co-immunoprecipitation assays, and immunofluorescent labeling, we observed that pRb loss resulted in Rac1 and Pak1 overexpression concomitant with merlin inactivation by Pak1, merlin detachment from the membrane, and adherens junction loss. Our data support a pRb function in cell adhesion while elucidating the mechanism for this function. Our work suggests that in some tumor types pRb inactivation results in both a loss of cell cycle control that promotes initial tumor growth as well as in a loss of cell-to-cell contacts, which contributes to later stages of metastasis.


Subject(s)
Osteoblasts/metabolism , Retinoblastoma Protein/metabolism , 3T3 Cells , Adherens Junctions/genetics , Adherens Junctions/physiology , Animals , Cadherins/genetics , Cadherins/metabolism , Cell Adhesion/genetics , Cell Adhesion/physiology , Cell Communication/genetics , Cell Communication/physiology , Cell Proliferation , Cells, Cultured , Female , Gene Expression Profiling , Immunoblotting , Mice , Mice, Inbred BALB C , Mice, Knockout , Mice, SCID , Models, Biological , Neuropeptides/genetics , Neuropeptides/metabolism , Osteoblasts/cytology , Osteogenesis/genetics , Osteogenesis/physiology , Osteosarcoma/genetics , Osteosarcoma/metabolism , RNA Interference , Retinoblastoma Protein/genetics , Retinoblastoma Protein/physiology , Reverse Transcriptase Polymerase Chain Reaction , Skull/embryology , Skull/metabolism , p21-Activated Kinases/genetics , p21-Activated Kinases/metabolism , rac GTP-Binding Proteins/genetics , rac GTP-Binding Proteins/metabolism , rac1 GTP-Binding Protein
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