Association of porcine circovirus infection with mycotoxicosis: a case report / Infecção por circovírus suíno associado a micotoxicose: relato de caso

Circovirus is widespread in pig farming, and mainly affects piglets increasing morbidity and mortality rates, being vaccination the most effective strategy to control one. However, for an effective vaccine response, certain factors must be considered, such as the adoption of good practices during the conservation and handling of vaccines, environmental challenges, nutritional and health status of the animals, and presence of immunosuppressive agents, such as mycotoxins, in the feed. Here, we describe a circovirus outbreak associated with mycotoxin immunosuppression that occurred in the piglets during the nursery phase at a commercial farm, which initiated with a sudden increase in the mortality of vaccinated piglets. Blood samples were collected and analyzed using RT-PCR, while the feed was subjected to mycotoxicological analysis. RT-PCR analysis revealed the presence of porcine circovirus type 2 (PCV-2) in the blood serum samples, thereby confirming the circovirus outbreak. The feed analysis revealed elevated levels of mycotoxins (deoxynivalenol, aflatoxins, and fumonisins), which were above the levels tolerated by the piglets during the nursery phase. Therefore, the contaminated feed was discarded, and a new ration was made available. Concurrently, the vaccination program was amended to normalize the mortality rate. The presence of mycotoxins in the feed could be the predisposed factor for piglet infection caused by PCV-2 and other diseases. This is an important aspect because the immunosuppressive effect of mycotoxins can alter the vaccine response, thereby making the piglets more susceptible to the diseases even after being vaccinated, although they should be immunologically protected.(AU)

O circovírus é muito difundido na suinocultura e atinge principalmente leitões, aumentando as taxas de morbi-mortalidade, sendo a vacinação a estratégia mais eficaz de controle. No entanto, para uma resposta vacinal eficaz, alguns fato-res devem ser considerados, como a adoção de boas práticas durante a conservação e manuseio de vacinas, desafios ambientais, estado nutricional e de saúde dos animais e presença de agentes imunossupressores, como micotoxinas, na ração. Descreveu-se um surto de circovírus associado à imunossupressão por micotoxinas que ocorreu em leitões durante a fase de creche em uma granja comercial, que começou com um aumento repentino na mortalidade de leitões vacinados. Amostras de sangue foram coletadas e analisadas por RT-PCR, enquanto a ração foi submetida à análise micotoxicológica. A análise de RT-PCR revelou a presença de circovírus suíno tipo 2 (PCV-2), confirmando assim o surto de circovírus. A análise da ração revelou níveis de micotoxinas (desoxinivalenol, aflatoxinas e fumonisinas) acima dos tolerados pelos leitões nesta fase. Portanto, o alimento con-taminado foi descartado e uma nova ração foi disponibilizada. Simultaneamente, o programa de vacinação foi alterado para normalizar a taxa de mortalidade. A presença de micotoxinas na ração pode ser o fator predisponente para infecção de leitões causada por PCV-2 e outras doenças. Esse é um aspecto importante, pois o efeito imunossupressor das micotoxinas pode alte-rar a resposta vacinal, tornando os leitões mais suscetíveis às doenças mesmo após vacinação.(AU)

Novel Cyclovirus Species in Dogs with Hemorrhagic Gastroenteritis.

Nested PCRs with circovirus/cyclovirus pan-rep (replicase gene) primers detected eukaryotic circular Rep-encoding single-stranded DNA (CRESS DNA) viruses in three (samples CN9E, CN16E and CN34) of 18 canine parvovirus-2-positive fecal samples from household dogs with hemorrhagic gastroenteritis on the Caribbean island of Nevis. The complete genomes of CRESS DNA virus CN9E, CN16E and CN34 were determined by inverse nested PCRs. Based on (i) genome organization, (ii) location of the putative origin of replication, (iii) pairwise genome-wide sequence identities, (iv) the presence of conserved motifs in the putative replication-associated protein (Rep) and the arginine-rich region in the amino terminus of the putative capsid protein (Cp) and (v) a phylogenetic analysis, CN9E, CN16E and CN34 were classified as cycloviruses. Canine-associated cycloviruses CN16E and CN34 were closely related to each other and shared low genome-wide nucleotide (59.642-59.704%), deduced Rep (35.018-35.379%) and Cp (26.601%) amino acid sequence identities with CN9E. All the three canine-associated cycloviruses shared < 80% genome-wide pairwise nucleotide sequence identities with cycloviruses from other animals/environmental samples, constituting two novel species (CN9E and CN16E/34) within the genus Cyclovirus. Considering the feeding habits of dogs, we could not determine whether the cycloviruses were of dietary origin or infected the host. Interestingly, the CN9E putative Rep-encoding open reading frame was found to use the invertebrate mitochondrial genetic code with an alternative initiation codon (ATA) for translation, corroborating the hypothesis that cycloviruses are actually arthropod-infecting viruses. To our knowledge, this is the first report on the detection and complete genome analysis of cycloviruses from domestic dogs.

Cyclovirus detection in Chilean adults with and without community-acquired pneumonia.

Cycloviruses (CyV) (genus Cyclovirus, family Circoviridae) are nonenveloped DNA viruses. The first report in humans was in 2010 and research has focused only on disease-associated human sample detection. The only HuACyV (CyCV-ChileNPA1, HuACyV10) reported in the Chilean population was in children (3.3%) with an acute respiratory infection. Its detection in respiratory samples from adults, with/without respiratory disease remains unknown. The aim of this study was to detect HuACyV10 in adults with and without respiratory disease. HuACyV10 was studied in nasopharyngeal swabs from 105 hospitalized adults with community-acquired pneumonia (CAP) and 104 adults without respiratory symptoms. Total nucleic acids were extracted, and viral rep and cp gene fragments were amplified by real-time polymerase chain reaction. HuACyV10 was detected in 19.05% adults with CAP and in 0.96% asymptomatic adults, being significantly higher in adult CAP than asymptomatic (n = 1) ones (p = 0.0001). C t values were between 26.7 and 39.6, and the median was 34.1 for rep and 33.8 for the CAP in adults CAP (p = 0.68), and 35.7 and 36.0, respectively, in the asymptomatic case. HuACyV10 detection in CAP adults concentrated in the Autumn-Winter season of the Southern hemisphere. The only asymptomatic adult with HuACyV10 was detected in the Spring-Summer period. In this first report of HuACyV10 in respiratory samples from adults, detection was significantly higher in CAP than in asymptomatic adults. As the sensitivity of both rep and cp genes was similar, both can be applied for detecting HuACyV10. It would be advisable to investigate the pathogenic role of HuACyV10 in adult respiratory infections. ​.

A molecular survey reveals high occurrence of co-infections in intensive pork production farms with increased rates of mummified swine fetuses in Southern Brazil / [Pesquisa molecular revela alta ocorrência de coinfecções em granjas de produção intensiva de suínos com altas taxas de mumificação fetal no sul do Brasil]

Neste estudo, 308 amostras de fetos mumificados foram testadas para parvovírus suíno (PPV), circovírus suíno tipos 2 e 3 (PCV2 e PCV3) e leptospiras patogênicas. A idade gestacional no momento da perda gestacional e a frequência da mumificação fetal de acordo com a ordem de parto também foram investigadas. As amostras foram coletadas em granjas comerciais de criação de suínos da região sul do Brasil que apresentassem taxas de mumificação fetal igual ou maiores a 2,5%. Fragmentos de pulmão, rim, fígado e coração de fetos suínos mumificados foram coletados para análise molecular. Resultados da PCR foram classificados de acordo com a região de origem das amostras, tendo Santa Catarina, Paraná e Rio Grande do Sul contabilizado 87 (28,25%), 89 (28,90%) e 132 (42,86%) do total de amostras de fetos suínos mumificados, respectivamente. Coinfecções foram observadas na maioria dos casos e PCV3 foi o agente mais prevalente detectado, encontrado em 298 amostras (96,75%). A maioria das perdas gestacionais foi observada entre 50 e 70 dias de gestação (168; 54,5%) e a mumificação fetal não foi associada à ordem de parto das matrizes. Os achados sugerem que as altas taxas de fetos suínos mumificados na região Sul do Brasil podem ser explicadas pela infecção com esses agentes virais.(AU)

Liver virome of healthy pigs reveals diverse small ssDNA viral genomes.

Brazil is a major exporter of pork meat worldwide. Swine liver is a common ingredient in food consumed by humans, thus emphasizing the importance of evaluating the presence of associated pathogens in swine liver. To obtain knowledge, this study aimed to provide insights into the viral communities of livers collected from slaughtered pigs from southern Brazil. The 46 livers were processed and submitted for high-throughput sequencing (HTS). The sequences were most closely related to Anelloviridae, Circoviridae and Parvoviridae families. The present work also describes the first Brazilian PCV1 and the first PPV6 and PPV7 from South America. Virus frequencies revelead 63% of samples positive for TTSuV1, 71% for TTSuVk2, 10.8% for PCV, 13% for PPV and 6% for PBov. This report addresses the diversity of the liver virome of healthy pigs and expands the number of viruses detected, further characterizing their genomes to assist future studies.

Small circular single stranded DNA viral genomes in unexplained cases of human encephalitis, diarrhea, and in untreated sewage.

Viruses with small circular ssDNA genomes encoding a replication initiator protein can infect a wide range of eukaryotic organisms ranging from mammals to fungi. The genomes of two such viruses, a cyclovirus (CyCV-SL) and gemycircularvirus (GemyCV-SL) were detected by deep sequencing of the cerebrospinal fluids of Sri Lankan patients with unexplained encephalitis. One and three out of 201 CSF samples (1.5%) from unexplained encephalitis patients tested by PCR were CyCV-SL and GemyCV-SL DNA positive respectively. Nucleotide similarity searches of pre-existing metagenomics datasets revealed closely related genomes in feces from unexplained cases of diarrhea from Nicaragua and Brazil and in untreated sewage from Nepal. Whether the tropism of the cyclovirus and gemycircularvirus reported here include humans or other cellular sources in or on the human body remains to be determined.

Genomic characterization of novel circular ssDNA viruses from insectivorous bats in Southern Brazil.

Circoviruses are highly prevalent porcine and avian pathogens. In recent years, novel circular ssDNA genomes have recently been detected in a variety of fecal and environmental samples using deep sequencing approaches. In this study the identification of genomes of novel circoviruses and cycloviruses in feces of insectivorous bats is reported. Pan-reactive primers were used targeting the conserved rep region of circoviruses and cycloviruses to screen DNA bat fecal samples. Using this approach, partial rep sequences were detected which formed five phylogenetic groups distributed among the Circovirus and the recently proposed Cyclovirus genera of the Circoviridae. Further analysis using inverse PCR and Sanger sequencing led to the characterization of four new putative members of the family Circoviridae with genome size ranging from 1,608 to 1,790 nt, two inversely arranged ORFs, and canonical nonamer sequences atop a stem loop.

Two novel circo-like viruses detected in human feces: complete genome sequencing and electron microscopy analysis.

The application of viral metagenomic techniques and a series of PCRs in a human fecal sample enabled the detection of two novel circular unisense DNA viral genomes with 92% nucleotide similarity. The viruses were tentatively named circo-like virus-Brazil (CLV-BR) strains hs1 and hs2 and have genome lengths of 2526 and 2533 nucleotides, respectively. Four major open reading frames (ORFs) were identified in each of the genomes, and differences between the two genomes were primarily observed in ORF 2. Only ORF 3 showed significant amino acid similarities to a putative rolling circle replication initiator protein (Rep), although with low identity (36%). Our phylogenetic analysis, based on the Rep protein, demonstrated that the CLV-BRs do not cluster with members of the Circoviridae, Nanoviridae or Geminiviridae families and are more closely related to circo-like genomes previously identified in reclaimed water and feces of a wild rodent and of a bat. The CLV-BRs are members of a putative new family of circular Rep-encoding ssDNA viruses. Electron microscopy revealed icosahedral (~23 nm) structures, likely reflecting the novel viruses, and rod-shaped viral particles (~65-460 × 21 × 10 nm in length, diameter, and axial canal, respectively). Circo-like viruses have been detected in stool samples from humans and other mammals (bats, rodents, chimpanzees and bovines), cerebrospinal fluid and sera from humans, as well as samples from many other sources, e.g., insects, meat and the environment. Further studies are needed to classify all novel circular DNA viruses and elucidate their hosts, pathogenicity and evolutionary history.

Virus SEN: epidemiologia e sua relação com doenças hepáticas / SEN virus: epidemiology and its relation to liver disease

Um vírus recentemente identificado e denominado como vírus SEN (SENV) tem sido considerado como um possível agente causador das hepatites não A-E. Trata-se de um DNA vírus de cadeia única, não-envelopado, pertencente à superfamília Circoviridae, com prevalência bastante variável em indivíduos saudáveis. Embora sua principal via de transmissão parece ser a parenteral, outras formas de transmissão não podem ser excluídas. Apesar da prevalência da infecção pelo SENV ser mais freqüente em pacientes com doenças hepáticas do que na população geral, não existem evidências comprovando que a infecção isolada por este vírus cause hepatite aguda ou que a co-infecção com os vírus das hepatites A, B ou C piore o curso da doença hepática. Em indivíduos com doença hepática preexistente não foram observadas diferenças estatisticamente significantes nos níveis de alanina aminotransferase (ALT) e nos achados histológicos hepáticos quando comparados os pacientes com e sem a infecção associada pelo vírus SEN. Diferente das infecções crônicas causadas pelos vírus B e C, a infecção pelo SENV não tem sido considerada como um fator de risco para o desenvolvimento de carcinoma hepatocelular. Finalmente, apesar da maior prevalência da infecção pelo vírus SEN em pacientes transfundidos, não existe evidência clara da relação causal entre este agente infeccioso e a hepatite pós-transfusional não A-E. Novos estudos são necessários para se definir a patogênese e a importãncia clínica da infecção pelo vírus SEN.

SENV, a new, recently-identified human virus, has been considered a possible causative agent of non-A to E hepatitis. It is a single stranded, non-enveloped DNA virus classified within the Circoviridae family. Prevalence in different populations shows great variability with differences between countries and ethnic groups. Although parenteral route is an efficient way for virus transmission, other routes of transmission cannot be excluded. The effect of SENV on acute and chronic liver diseases has been studied. In spite of the fact that the prevalence of SENV is higher among patients with hepatic disorders, there is no evidence that SENV infection is able to cause acute hepatitis or to change the clinical course of hepatitis A, B or C. There is also no evidence that alanine aminotransferase (ALT) is higher or that the histological parameters are worse in patients with hepatic disorders co-infected with SENV as compared to patients without co-infections. Unlike chronic hepatitis B Virus or Hepatitis C Virus infection, SENV infection has not been considered a risk factor for developing hepatocellular carcinoma. Finally, although it is clear that the prevalence of SENV is higher in blood transfusion recipients, there is no clear evidence that this virus is the causative agent of post-transfusion hepatitis. Further studies are needed to define the clinical importance of SENV infection.