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1.
Proc Natl Acad Sci U S A ; 99(16): 10742-7, 2002 Aug 06.
Article in English | MEDLINE | ID: mdl-12136122

ABSTRACT

Photorhabdus luminescens, a bacterium with alternate pathogenic and symbiotic phases of its lifestyle, represents a source of novel genes associated with both virulence and symbiosis. This entomopathogen lives in a "symbiosis of pathogens" with nematodes that invade insects. Thus the bacteria are symbiotic with entomopathogenic nematodes but become pathogenic on release from the nematode into the insect blood system. Within the insect, the bacteria need to both avoid the peptide- and cellular- (hemocyte) mediated immune response and also to kill the host, which then acts as a reservoir for bacterial and nematode reproduction. However, the mechanisms whereby Photorhabdus evades the insect immune system and kills the host are unclear. Here we show that a single large Photorhabdus gene, makes caterpillars floppy (mcf), is sufficient to allow Esherichia coli both to persist within and kill an insect. The predicted high molecular weight Mcf toxin has little similarity to other known protein sequences but carries a BH3 domain and triggers apoptosis in both insect hemocytes and the midgut epithelium.


Subject(s)
Bacterial Proteins/metabolism , Bacterial Toxins/metabolism , Cosmids/physiology , Genes, Bacterial/physiology , Pest Control, Biological , Photorhabdus , Amino Acid Sequence , Animals , Apoptosis , Bacterial Proteins/genetics , Bacterial Toxins/genetics , Base Sequence , Consensus Sequence , DNA, Complementary , Digestive System/cytology , Escherichia coli/pathogenicity , Hemocytes/cytology , Manduca/microbiology , Molecular Sequence Data , Open Reading Frames , Photorhabdus/genetics
2.
Curr Protoc Mol Biol ; Chapter 1: Unit1.10, 2001 May.
Article in English | MEDLINE | ID: mdl-18265038

ABSTRACT

Advantages of lambda as a cloning vector are discussed along with considerations for the insert DNA (i.e., size, spi and hfl state). Maps of lambda-derived cloning vectors are provided in addition to a discussion and map of a cosmid (a lambda-derived plasmid vector).


Subject(s)
Bacteriophage lambda/genetics , Bacteriophage lambda/physiology , Cloning, Molecular/methods , Genetic Vectors , Molecular Biology/methods , Cosmids/genetics , Cosmids/physiology
3.
Yeast ; 16(16): 1519-26, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11113974

ABSTRACT

We report the complete sequence of two cosmids, SPCC895 (38457 bp insert, EMBL Accession No. AL035247) and SPCC1322 (42068 bp insert, EMBL Accession No. AL035259), localized on chromosome III of the Schizosaccharomyces pombe genome. Fourteen Coding DNA sequences (CDSs) were identified in SPCC895 and 17 in SPCC1322. Two known genes were found in each cosmid: map2 and gms1 on SPCC895, encoding the mating type P-factor precursor and an UDP-galactose transporter, respectively, and bub1 and ade6 in SPCC1322, encoding a protein kinase and a phosphoribosylaminoimidazole carboxylase, respectively. The fission yeast K RNA gene has been localized to SPCC895. Three ribosomal proteins have been predicted among these two cosmids. Nine CDSs similar to known proteins were found on SPCC895, and seven on SPCC1322. They include putative genes for an uridylate kinase, a proteasome catalytic component, an ion transporter, a checkpoint protein, a translation initiation protein, a SNARE complex protein, a protein involved in cytoskeletal organization, a spindle pole body-associating protein, pre-mRNA splicing factor RNA helicase, a 3'-5' exonuclease for RNA 3' ss-tail, an UTP-glucose-1-phosphate uridylyltransferase, a leukotriene A(4) hydrolase, a member of the RanBP7-importin beta-Cse1p superfamily, a Ca(++)-calmodulin-dependent serine/threonine protein kinase and a prohibitin antiproliferative protein. One CDS is predicted to be an integral membrane protein. One CDS from SPCC895 is similar to a CDS of unknown function from Saccharomyces cerevisiae and three from SPCC1322 are similar to CDSs of unknown function from Candida albicans, S. cerevisiae and Sz. pombe, respectively. Finally, one CDS of SPCC895 and three of SPCC1322 correspond to orphan genes.


Subject(s)
Chromosomes, Fungal , Cosmids , Schizosaccharomyces/genetics , Amino Acid Sequence , Cosmids/physiology , Fungal Proteins/genetics , Fungal Proteins/physiology , Molecular Sequence Data , Open Reading Frames , Sequence Analysis, DNA
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